Wall clock time and date at job start Mon Mar 30 2020 04:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47237 * 2 1 4 4 C 1.53782 * 113.61277 * 185.00184 * 3 2 1 5 5 C 1.53785 * 87.07859 * 220.01632 * 4 3 2 6 6 N 1.46893 * 113.61466 * 139.98040 * 5 4 3 7 7 C 1.46902 * 110.99965 * 156.52839 * 6 5 4 8 8 C 1.53039 * 109.46023 * 204.99827 * 7 6 5 9 9 C 1.53194 * 109.31339 * 178.62784 * 8 7 6 10 10 N 1.46929 * 108.77338 * 54.63818 * 9 8 7 11 11 C 1.36938 * 120.63009 * 126.37152 * 10 9 8 12 12 H 1.08000 * 119.99931 * 332.58030 * 11 10 9 13 13 C 1.38817 * 119.99746 * 152.58291 * 11 10 9 14 14 N 1.31612 * 120.00092 * 342.50375 * 13 11 10 15 15 Si 1.86798 * 119.99583 * 162.77719 * 13 11 10 16 16 H 1.48500 * 109.47109 * 60.00223 * 15 13 11 17 17 H 1.48508 * 109.46991 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47656 * 299.99742 * 15 13 11 19 19 C 1.46929 * 118.73866 * 306.64350 * 10 9 8 20 20 C 1.52760 * 109.00960 * 53.30862 * 19 10 9 21 21 C 1.53779 * 87.17257 * 25.38955 * 5 4 3 22 22 H 1.09001 * 109.46917 * 59.99872 * 1 2 3 23 23 H 1.08994 * 109.47240 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47130 * 300.00270 * 1 2 3 25 25 H 1.08998 * 109.47130 * 239.99730 * 2 1 3 26 26 H 1.08994 * 109.47008 * 119.99716 * 2 1 3 27 27 H 1.09003 * 112.84626 * 316.19462 * 3 2 1 28 28 H 1.08994 * 113.61665 * 105.47122 * 4 3 2 29 29 H 1.09000 * 113.61331 * 334.55979 * 4 3 2 30 30 H 1.09003 * 113.61529 * 270.79972 * 5 4 3 31 31 H 1.00900 * 111.00072 * 32.57752 * 6 5 4 32 32 H 1.08994 * 109.46550 * 324.97538 * 7 6 5 33 33 H 1.09000 * 109.49989 * 58.67900 * 8 7 6 34 34 H 1.09000 * 109.52347 * 298.59454 * 8 7 6 35 35 H 1.08997 * 109.58900 * 294.85354 * 9 8 7 36 36 H 1.08997 * 109.70721 * 174.49177 * 9 8 7 37 37 H 0.97003 * 120.00017 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.58872 * 173.15048 * 19 10 9 39 39 H 1.09003 * 109.58399 * 293.56745 * 19 10 9 40 40 H 1.08994 * 109.56594 * 185.55179 * 20 19 10 41 41 H 1.09001 * 109.38476 * 65.51623 * 20 19 10 42 42 H 1.09002 * 113.61878 * 89.16037 * 21 5 4 43 43 H 1.09007 * 113.61476 * 220.06325 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5688 1.5553 -0.1229 5 6 3.4888 2.6935 0.9083 6 7 4.5754 2.6695 1.8965 7 6 4.7899 4.0025 2.4754 8 6 6.2301 4.1131 2.9810 9 6 6.4602 5.5156 3.5528 10 7 5.4395 5.7826 4.5754 11 6 5.8012 6.1773 5.8358 12 1 6.7607 5.8873 6.2380 13 6 4.9346 6.9502 6.5965 14 7 3.9408 7.5888 6.0163 15 14 5.1838 7.0900 8.4425 16 1 6.5212 7.6733 8.7187 17 1 4.1331 7.9672 9.0188 18 1 5.0953 5.7413 9.0576 19 6 4.0236 5.6121 4.2218 20 6 3.8207 4.2139 3.6409 21 6 2.1867 2.0462 1.4086 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.4976 2.0832 -0.6953 28 1 3.9049 1.8809 -1.1072 29 1 4.1019 0.6758 0.2382 30 1 3.3440 3.6774 0.4622 31 1 5.4262 2.3108 1.4899 32 1 4.6131 4.7620 1.7139 33 1 6.9200 3.9393 2.1552 34 1 6.4007 3.3701 3.7601 35 1 6.3794 6.2534 2.7546 36 1 7.4514 5.5710 4.0027 37 1 3.3354 8.1292 6.5478 38 1 3.4077 5.7289 5.1135 39 1 3.7401 6.3580 3.4792 40 1 2.7956 4.1119 3.2847 41 1 4.0131 3.4697 4.4137 42 1 2.3412 1.3011 2.1891 43 1 1.4086 2.7675 1.6587 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393755267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:29 Heat of formation + Delta-G solvation = 22.900237 kcal Electronic energy + Delta-G solvation = -19164.928282 eV Core-core repulsion = 16438.307007 eV Total energy + Delta-G solvation = -2726.621275 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.45201 -37.49906 -34.49430 -32.65171 -31.26535 -29.90119 -28.77217 -25.69675 -25.12242 -24.05706 -22.13585 -21.58530 -20.58536 -19.60776 -18.77502 -16.68747 -15.70123 -15.28329 -15.00505 -14.65577 -14.46862 -13.86742 -13.42155 -13.36220 -13.00021 -12.94953 -12.34652 -12.29880 -12.16186 -12.03301 -11.46360 -11.36482 -11.16308 -11.00116 -10.76124 -10.66997 -10.61830 -10.38973 -10.16175 -10.09540 -10.00438 -9.85236 -9.47988 -9.34995 -8.42889 -8.07664 -6.62354 -5.73620 -3.15118 3.42091 3.47552 3.49409 4.40293 4.52748 4.54568 4.65612 4.86083 4.93231 5.19036 5.20104 5.34513 5.41346 5.49163 5.56964 5.62498 5.67553 5.75680 5.76926 5.85208 5.86374 5.97692 6.01683 6.06134 6.18222 6.19704 6.35252 6.38828 6.45183 6.53668 6.71050 6.76118 6.83130 6.86914 7.04647 7.47127 7.51880 7.70268 7.75812 7.85036 8.50587 9.26892 9.90793 10.47605 11.35024 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034700 B = 0.004329 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.720498 B = 6466.912236 C = 6953.721733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.113 4.113 4 C -0.139 4.139 5 C 0.062 3.938 6 N -0.676 5.676 7 C 0.096 3.904 8 C -0.134 4.134 9 C 0.148 3.852 10 N -0.592 5.592 11 C -0.252 4.252 12 H 0.064 0.936 13 C 0.002 3.998 14 N -0.903 5.903 15 Si 0.902 3.098 16 H -0.283 1.283 17 H -0.291 1.291 18 H -0.284 1.284 19 C 0.170 3.830 20 C -0.122 4.122 21 C -0.118 4.118 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.333 0.667 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.014 0.986 36 H 0.054 0.946 37 H 0.253 0.747 38 H 0.087 0.913 39 H 0.013 0.987 40 H 0.045 0.955 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 -12.538 -12.575 18.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.132 4.132 4 C -0.177 4.177 5 C -0.049 4.049 6 N -0.306 5.306 7 C -0.013 4.013 8 C -0.174 4.174 9 C 0.021 3.979 10 N -0.315 5.315 11 C -0.382 4.382 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.548 5.548 15 Si 0.732 3.268 16 H -0.209 1.209 17 H -0.217 1.217 18 H -0.210 1.210 19 C 0.044 3.956 20 C -0.162 4.162 21 C -0.156 4.156 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.152 0.848 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.031 0.969 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.615 -12.609 -11.971 17.758 hybrid contribution 0.473 0.629 0.150 0.801 sum -3.142 -11.979 -11.821 17.120 Atomic orbital electron populations 1.21755 0.96049 1.01216 1.01839 1.21460 0.95717 0.95972 1.01705 1.22474 0.95599 0.96546 0.98557 1.23257 0.96589 0.99278 0.98614 1.22998 0.93373 0.96722 0.91768 1.60768 1.09311 1.25853 1.34705 1.21553 0.96208 0.87472 0.96079 1.22219 0.94558 1.00872 0.99703 1.20846 0.93376 0.91952 0.91702 1.44042 1.00595 1.78314 1.08517 1.19155 1.03257 1.25767 0.89991 0.91786 1.25012 0.99268 0.96733 0.98646 1.70035 1.19008 1.31631 1.34115 0.86378 0.77234 0.77512 0.85702 1.20943 1.21652 1.21019 1.20712 0.86092 0.89814 0.98976 1.22090 0.96628 1.00887 0.96556 1.23150 0.96744 0.99873 0.95881 0.93008 0.93118 0.92540 0.92364 0.91805 0.89709 0.92097 0.89596 0.91528 0.84818 0.94828 0.93631 0.91573 0.96780 0.92751 0.93657 0.89468 0.96912 0.93631 0.92324 0.89416 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.90 37.16 0.37 -0.90 16 2 C -0.11 -1.00 5.77 -26.73 -0.15 -1.15 16 3 C -0.11 -1.14 3.65 -89.72 -0.33 -1.47 16 4 C -0.14 -1.45 7.23 -25.92 -0.19 -1.64 16 5 C 0.06 0.80 3.92 -66.90 -0.26 0.54 16 6 N -0.68 -9.92 6.36 -98.85 -0.63 -10.55 16 7 C 0.10 1.69 2.45 -67.67 -0.17 1.52 16 8 C -0.13 -2.40 5.36 -26.61 -0.14 -2.54 16 9 C 0.15 3.20 6.52 -3.71 -0.02 3.17 16 10 N -0.59 -15.29 3.00 -172.58 -0.52 -15.80 16 11 C -0.25 -7.09 9.59 -15.06 -0.14 -7.24 16 12 H 0.06 1.76 7.88 -52.49 -0.41 1.35 16 13 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 14 N -0.90 -26.72 11.20 55.49 0.62 -26.10 16 15 Si 0.90 22.05 29.59 -169.99 -5.03 17.02 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 19 C 0.17 4.21 5.28 -3.93 -0.02 4.19 16 20 C -0.12 -2.48 5.57 -26.83 -0.15 -2.63 16 21 C -0.12 -1.46 7.25 -25.83 -0.19 -1.65 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.60 7.85 -51.93 -0.41 0.20 16 27 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 30 H 0.07 0.92 7.49 -51.93 -0.39 0.54 16 31 H 0.33 4.41 8.16 -39.29 -0.32 4.09 16 32 H 0.03 0.62 7.47 -51.93 -0.39 0.23 16 33 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 37 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.05 0.87 7.85 -51.93 -0.41 0.46 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.09 1.16 7.90 -51.93 -0.41 0.75 16 43 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 LS Contribution 331.52 15.07 5.00 5.00 Total: -1.00 -29.16 331.52 -10.13 -39.29 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -8.09 Total: 0.96 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -1.48 Total: -9.82 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.53 Total: -52.45 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.16 -10.13 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393755267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.190 kcal (2) G-P(sol) polarization free energy of solvation -29.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds