Wall clock time and date at job start Mon Mar 30 2020 04:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47237 * 2 1 4 4 C 1.53782 * 113.61277 * 185.00184 * 3 2 1 5 5 C 1.53785 * 87.07859 * 220.01632 * 4 3 2 6 6 N 1.46893 * 113.61466 * 139.98040 * 5 4 3 7 7 C 1.46902 * 110.99965 * 156.52839 * 6 5 4 8 8 C 1.53039 * 109.46023 * 204.99827 * 7 6 5 9 9 C 1.53194 * 109.31339 * 178.62784 * 8 7 6 10 10 N 1.46929 * 108.77338 * 54.63818 * 9 8 7 11 11 C 1.36938 * 120.63009 * 126.37152 * 10 9 8 12 12 H 1.08000 * 119.99931 * 332.58030 * 11 10 9 13 13 C 1.38817 * 119.99746 * 152.58291 * 11 10 9 14 14 N 1.31612 * 120.00092 * 342.50375 * 13 11 10 15 15 Si 1.86798 * 119.99583 * 162.77719 * 13 11 10 16 16 H 1.48500 * 109.47109 * 60.00223 * 15 13 11 17 17 H 1.48508 * 109.46991 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47656 * 299.99742 * 15 13 11 19 19 C 1.46929 * 118.73866 * 306.64350 * 10 9 8 20 20 C 1.52760 * 109.00960 * 53.30862 * 19 10 9 21 21 C 1.53779 * 87.17257 * 25.38955 * 5 4 3 22 22 H 1.09001 * 109.46917 * 59.99872 * 1 2 3 23 23 H 1.08994 * 109.47240 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47130 * 300.00270 * 1 2 3 25 25 H 1.08998 * 109.47130 * 239.99730 * 2 1 3 26 26 H 1.08994 * 109.47008 * 119.99716 * 2 1 3 27 27 H 1.09003 * 112.84626 * 316.19462 * 3 2 1 28 28 H 1.08994 * 113.61665 * 105.47122 * 4 3 2 29 29 H 1.09000 * 113.61331 * 334.55979 * 4 3 2 30 30 H 1.09003 * 113.61529 * 270.79972 * 5 4 3 31 31 H 1.00900 * 111.00072 * 32.57752 * 6 5 4 32 32 H 1.08994 * 109.46550 * 324.97538 * 7 6 5 33 33 H 1.09000 * 109.49989 * 58.67900 * 8 7 6 34 34 H 1.09000 * 109.52347 * 298.59454 * 8 7 6 35 35 H 1.08997 * 109.58900 * 294.85354 * 9 8 7 36 36 H 1.08997 * 109.70721 * 174.49177 * 9 8 7 37 37 H 0.97003 * 120.00017 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.58872 * 173.15048 * 19 10 9 39 39 H 1.09003 * 109.58399 * 293.56745 * 19 10 9 40 40 H 1.08994 * 109.56594 * 185.55179 * 20 19 10 41 41 H 1.09001 * 109.38476 * 65.51623 * 20 19 10 42 42 H 1.09002 * 113.61878 * 89.16037 * 21 5 4 43 43 H 1.09007 * 113.61476 * 220.06325 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5688 1.5553 -0.1229 5 6 3.4888 2.6935 0.9083 6 7 4.5754 2.6695 1.8965 7 6 4.7899 4.0025 2.4754 8 6 6.2301 4.1131 2.9810 9 6 6.4602 5.5156 3.5528 10 7 5.4395 5.7826 4.5754 11 6 5.8012 6.1773 5.8358 12 1 6.7607 5.8873 6.2380 13 6 4.9346 6.9502 6.5965 14 7 3.9408 7.5888 6.0163 15 14 5.1838 7.0900 8.4425 16 1 6.5212 7.6733 8.7187 17 1 4.1331 7.9672 9.0188 18 1 5.0953 5.7413 9.0576 19 6 4.0236 5.6121 4.2218 20 6 3.8207 4.2139 3.6409 21 6 2.1867 2.0462 1.4086 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.4976 2.0832 -0.6953 28 1 3.9049 1.8809 -1.1072 29 1 4.1019 0.6758 0.2382 30 1 3.3440 3.6774 0.4622 31 1 5.4262 2.3108 1.4899 32 1 4.6131 4.7620 1.7139 33 1 6.9200 3.9393 2.1552 34 1 6.4007 3.3701 3.7601 35 1 6.3794 6.2534 2.7546 36 1 7.4514 5.5710 4.0027 37 1 3.3354 8.1292 6.5478 38 1 3.4077 5.7289 5.1135 39 1 3.7401 6.3580 3.4792 40 1 2.7956 4.1119 3.2847 41 1 4.0131 3.4697 4.4137 42 1 2.3412 1.3011 2.1891 43 1 1.4086 2.7675 1.6587 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393755267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:29 Heat of formation + Delta-G solvation = 6.229022 kcal Electronic energy + Delta-G solvation = -19165.651200 eV Core-core repulsion = 16438.307007 eV Total energy + Delta-G solvation = -2727.344193 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50050 -39.06981 -36.03031 -34.01979 -32.73496 -31.66307 -30.38269 -26.77891 -26.61059 -25.26543 -23.82876 -23.16965 -21.62668 -20.93495 -20.10202 -18.68483 -16.99320 -16.63641 -16.29108 -16.06466 -15.69748 -15.33553 -15.23099 -14.76490 -14.39669 -14.27726 -13.71503 -13.52939 -13.25423 -13.08169 -13.03446 -12.93981 -12.57933 -12.55439 -12.18945 -12.09282 -12.04025 -11.80043 -11.68341 -11.59852 -11.41179 -11.20370 -10.99446 -10.72248 -10.54589 -9.31334 -8.70717 -7.88074 -5.33084 1.46129 1.49302 1.56043 2.51316 3.19574 3.31552 3.66026 3.68870 3.77989 3.92319 3.99824 4.11158 4.16192 4.36032 4.44765 4.45344 4.55049 4.61213 4.72269 4.76585 4.85165 4.88260 4.95944 4.97957 5.01614 5.06616 5.10797 5.14475 5.19895 5.23749 5.28336 5.38768 5.43000 5.49384 5.51595 5.62939 5.65192 5.75611 6.26691 6.38172 6.61307 7.13837 7.85476 8.37440 9.18637 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034700 B = 0.004329 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.720498 B = 6466.912236 C = 6953.721733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C -0.103 4.103 4 C -0.125 4.125 5 C 0.052 3.948 6 N -0.673 5.673 7 C 0.107 3.893 8 C -0.120 4.120 9 C 0.142 3.858 10 N -0.611 5.611 11 C -0.267 4.267 12 H 0.067 0.933 13 C -0.051 4.051 14 N -0.936 5.936 15 Si 0.969 3.031 16 H -0.274 1.274 17 H -0.293 1.293 18 H -0.279 1.279 19 C 0.179 3.821 20 C -0.106 4.106 21 C -0.124 4.124 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.347 0.653 32 H 0.028 0.972 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.012 0.988 36 H 0.057 0.943 37 H 0.250 0.750 38 H 0.051 0.949 39 H -0.009 1.009 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.078 0.922 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 -14.282 -13.739 19.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.122 4.122 4 C -0.163 4.163 5 C -0.058 4.058 6 N -0.305 5.305 7 C -0.003 4.003 8 C -0.160 4.160 9 C 0.016 3.984 10 N -0.335 5.335 11 C -0.397 4.397 12 H 0.085 0.915 13 C -0.247 4.247 14 N -0.582 5.582 15 Si 0.796 3.204 16 H -0.199 1.199 17 H -0.219 1.219 18 H -0.205 1.205 19 C 0.053 3.947 20 C -0.146 4.146 21 C -0.162 4.162 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.167 0.833 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.030 0.970 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.009 0.991 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.840 -14.381 -13.161 19.700 hybrid contribution 0.241 1.185 0.474 1.299 sum -2.599 -13.196 -12.687 18.490 Atomic orbital electron populations 1.21756 0.95717 1.01780 1.01632 1.21441 0.96017 0.95088 1.02063 1.22428 0.95741 0.97251 0.96752 1.23181 0.96703 0.98073 0.98315 1.23113 0.92930 0.97416 0.92334 1.60625 1.10456 1.23629 1.35789 1.21279 0.95122 0.89063 0.94830 1.22044 0.95504 0.97864 1.00539 1.21031 0.92442 0.94133 0.90751 1.44316 1.01617 1.78562 1.08997 1.19518 1.03428 1.25401 0.91330 0.91506 1.25810 0.99246 0.96732 1.02880 1.70194 1.19958 1.32560 1.35474 0.85328 0.77261 0.77436 0.80357 1.19922 1.21916 1.20465 1.20477 0.85517 0.91797 0.96931 1.21828 0.98114 0.97374 0.97252 1.23153 0.96283 0.99580 0.97192 0.92447 0.92217 0.93536 0.91068 0.92326 0.89156 0.90675 0.89028 0.92333 0.83332 0.95406 0.89878 0.92253 0.97010 0.92436 0.94121 0.93010 0.99132 0.92865 0.93593 0.90371 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.90 71.98 0.71 -1.55 16 2 C -0.11 -1.70 5.77 30.60 0.18 -1.52 16 3 C -0.10 -1.85 3.65 -10.21 -0.04 -1.89 16 4 C -0.12 -2.23 7.23 31.12 0.23 -2.01 16 5 C 0.05 1.25 3.92 45.44 0.18 1.43 16 6 N -0.67 -18.36 6.36 -466.64 -2.97 -21.33 16 7 C 0.11 3.63 2.45 44.94 0.11 3.74 16 8 C -0.12 -4.07 5.36 30.67 0.16 -3.90 16 9 C 0.14 6.05 6.52 86.36 0.56 6.62 16 10 N -0.61 -32.06 3.00 -699.91 -2.10 -34.16 16 11 C -0.27 -15.19 9.59 84.03 0.81 -14.39 16 12 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 13 C -0.05 -2.96 4.91 84.86 0.42 -2.54 16 14 N -0.94 -57.03 11.20 21.65 0.24 -56.78 16 15 Si 0.97 45.92 29.59 68.60 2.03 47.95 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 C 0.18 9.16 5.28 86.22 0.46 9.61 16 20 C -0.11 -4.35 5.57 30.53 0.17 -4.18 16 21 C -0.12 -2.93 7.25 31.18 0.23 -2.70 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 0.99 7.85 -2.39 -0.02 0.97 16 27 H 0.09 1.56 8.13 -2.39 -0.02 1.54 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.09 1.58 8.10 -2.39 -0.02 1.56 16 30 H 0.06 1.54 7.49 -2.39 -0.02 1.52 16 31 H 0.35 8.05 8.16 -89.69 -0.73 7.32 16 32 H 0.03 1.00 7.47 -2.39 -0.02 0.98 16 33 H 0.08 2.23 8.10 -2.39 -0.02 2.21 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 37 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 38 H 0.05 2.99 6.04 -2.39 -0.01 2.98 16 39 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.05 2.07 7.85 -2.39 -0.02 2.05 16 41 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.08 2.00 7.90 -2.39 -0.02 1.99 16 43 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -63.56 331.52 1.59 -61.97 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.22 Total: 15.64 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 4.17 Total: -13.28 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -4.83 Total: -112.27 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -63.56 1.59 -61.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393755267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.198 kcal (2) G-P(sol) polarization free energy of solvation -63.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds