Wall clock time and date at job start Mon Mar 30 2020 04:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47121 * 2 1 4 4 H 1.09002 * 109.46880 * 306.11960 * 3 2 1 5 5 C 1.50703 * 109.46977 * 186.12523 * 3 2 1 6 6 H 1.07996 * 119.99993 * 245.60769 * 5 3 2 7 7 C 1.37878 * 119.99864 * 65.60756 * 5 3 2 8 8 N 1.31508 * 120.00286 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99783 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47343 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47172 * 120.00122 * 9 7 5 12 12 H 1.48504 * 109.47212 * 240.00283 * 9 7 5 13 13 N 1.46902 * 109.47289 * 66.12774 * 3 2 1 14 14 C 1.46997 * 110.99897 * 41.40935 * 13 3 2 15 15 C 1.53031 * 109.47464 * 177.05065 * 14 13 3 16 16 N 1.47003 * 109.47991 * 58.15038 * 15 14 13 17 17 C 1.46891 * 110.74777 * 300.82635 * 16 15 14 18 18 H 1.09002 * 109.46408 * 299.67763 * 17 16 15 19 19 C 1.52947 * 109.81080 * 179.48489 * 17 16 15 20 20 C 1.53036 * 109.34756 * 179.84399 * 19 17 16 21 21 C 1.52968 * 109.57326 * 59.88389 * 20 19 17 22 22 C 1.53049 * 109.57698 * 300.23571 * 21 20 19 23 23 C 1.46887 * 110.99588 * 277.82224 * 13 3 2 24 24 H 1.08993 * 109.48032 * 63.45701 * 23 13 3 25 25 H 1.08992 * 109.47021 * 160.31888 * 1 2 3 26 26 H 1.08999 * 109.47274 * 280.32402 * 1 2 3 27 27 H 1.09002 * 109.46602 * 40.32233 * 1 2 3 28 28 H 1.09001 * 109.47469 * 239.99696 * 2 1 3 29 29 H 1.09001 * 109.47075 * 119.99647 * 2 1 3 30 30 H 0.97006 * 120.00472 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47367 * 57.05586 * 14 13 3 32 32 H 1.08998 * 109.47732 * 297.05241 * 14 13 3 33 33 H 1.09000 * 109.46678 * 298.15000 * 15 14 13 34 34 H 1.09000 * 109.47114 * 178.15224 * 15 14 13 35 35 H 1.00899 * 110.99996 * 177.05630 * 16 15 14 36 36 H 1.08993 * 109.49384 * 59.87561 * 19 17 16 37 37 H 1.09002 * 109.50637 * 299.81620 * 19 17 16 38 38 H 1.08999 * 109.45253 * 179.90953 * 20 19 17 39 39 H 1.09007 * 109.45270 * 299.85693 * 20 19 17 40 40 H 1.09006 * 109.45155 * 60.28781 * 21 20 19 41 41 H 1.08998 * 109.45859 * 180.22655 * 21 20 19 42 42 H 1.09002 * 109.50569 * 299.95896 * 22 21 20 43 43 H 1.08999 * 109.51783 * 179.88086 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5900 1.9870 -0.8302 5 6 3.5394 1.4452 -0.1516 6 1 4.1630 1.8018 0.6547 7 6 4.1150 0.9923 -1.3198 8 7 3.3556 0.5584 -2.3019 9 14 5.9735 0.9962 -1.5080 10 1 6.5953 1.5295 -0.2693 11 1 6.4501 -0.3903 -1.7432 12 1 6.3525 1.8523 -2.6607 13 7 1.6748 2.0911 1.2665 14 6 1.8721 1.1783 2.4018 15 6 1.5523 1.9108 3.7068 16 7 0.1690 2.4064 3.6645 17 6 -0.0220 3.3201 2.5303 18 1 0.6493 4.1726 2.6336 19 6 -1.4697 3.8122 2.4992 20 6 -1.6558 4.7657 1.3166 21 6 -1.3353 4.0332 0.0125 22 6 0.1115 3.5351 0.0463 23 6 0.2903 2.5800 1.2273 24 1 -0.3903 1.7359 1.1171 25 1 -0.3633 -0.9676 -0.3461 26 1 -0.3634 0.1842 1.0110 27 1 -0.3632 0.7835 -0.6650 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7605 0.2394 -3.1236 31 1 2.9079 0.8394 2.4199 32 1 1.2104 0.3186 2.2961 33 1 2.2358 2.7511 3.8286 34 1 1.6669 1.2247 4.5460 35 1 -0.0821 2.8522 4.5341 36 1 -1.6958 4.3361 3.4278 37 1 -2.1413 2.9608 2.3891 38 1 -2.6876 5.1163 1.2919 39 1 -0.9855 5.6179 1.4285 40 1 -2.0093 3.1842 -0.1021 41 1 -1.4645 4.7150 -0.8281 42 1 0.7861 4.3838 0.1595 43 1 0.3381 3.0116 -0.8825 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393778093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:01 Heat of formation + Delta-G solvation = 2.333858 kcal Electronic energy + Delta-G solvation = -20732.576572 eV Core-core repulsion = 18005.063471 eV Total energy + Delta-G solvation = -2727.513100 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.74025 -36.24689 -34.96928 -32.41811 -30.72759 -29.74422 -29.31460 -27.29870 -24.72692 -22.99227 -22.68483 -21.57033 -19.94593 -19.33183 -18.61573 -16.33446 -15.96845 -14.97109 -14.74290 -14.53584 -14.24343 -14.04153 -13.78399 -13.12406 -12.94047 -12.65917 -12.42403 -11.85038 -11.62739 -11.48374 -11.40823 -11.16726 -10.87658 -10.82348 -10.77080 -10.67532 -10.50420 -10.19597 -10.09921 -10.08624 -9.74831 -9.56239 -9.13691 -8.80669 -8.26396 -8.11837 -6.93799 -5.96522 -3.97974 3.32335 3.40456 3.45148 4.44018 4.45271 4.87396 5.02980 5.23736 5.29501 5.36890 5.58106 5.61745 5.70056 5.80526 5.88048 5.89311 5.90895 5.96905 6.05309 6.14695 6.20995 6.22827 6.36868 6.40224 6.43394 6.48495 6.54714 6.65106 6.70186 6.80253 6.85243 7.01137 7.06456 7.31129 7.35121 7.57389 7.66980 7.74046 7.91725 8.27554 8.46747 8.68642 9.09194 9.66181 11.11258 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025140 B = 0.007470 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.508254 B = 3747.634122 C = 4060.050531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.148 4.148 3 C 0.211 3.789 4 H 0.051 0.949 5 C -0.492 4.492 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.526 5.526 14 C 0.061 3.939 15 C 0.059 3.941 16 N -0.688 5.688 17 C 0.094 3.906 18 H 0.039 0.961 19 C -0.109 4.109 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.115 4.115 23 C 0.077 3.923 24 H 0.061 0.939 25 H 0.031 0.969 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.258 0.742 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.032 0.968 34 H 0.067 0.933 35 H 0.330 0.670 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.648 4.707 8.079 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 C 0.105 3.895 4 H 0.069 0.931 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.721 3.279 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.250 5.250 14 C -0.067 4.067 15 C -0.071 4.071 16 N -0.318 5.318 17 C -0.016 4.016 18 H 0.057 0.943 19 C -0.148 4.148 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.032 4.032 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.147 0.853 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.529 4.485 7.623 12.287 hybrid contribution 1.020 0.012 0.032 1.020 sum -7.509 4.497 7.654 11.627 Atomic orbital electron populations 1.22137 0.99388 0.99633 0.99722 1.22209 0.91861 1.02464 1.02199 1.19492 0.95575 0.88571 0.85858 0.93132 1.21167 0.91159 1.40513 1.00282 0.92230 1.24921 0.97855 0.95695 0.95892 1.69927 1.34477 1.43629 1.05400 0.86534 0.86031 0.77411 0.77968 1.19859 1.21281 1.21198 1.62507 1.19263 1.38337 1.04916 1.22052 1.01036 0.94190 0.89461 1.22063 0.88041 0.98411 0.98545 1.60570 1.24323 1.41266 1.05658 1.21550 0.95117 0.93408 0.91513 0.94345 1.21524 0.96572 0.99020 0.97655 1.21499 1.00634 0.98188 0.95004 1.21546 0.97556 0.99673 0.96793 1.21674 0.95069 0.99482 0.99077 1.21885 0.91961 0.96836 0.92492 0.92191 0.94988 0.93628 0.93509 0.89635 0.94146 0.93186 0.90422 0.94377 0.95006 0.91490 0.85302 0.92696 0.91490 0.92404 0.92225 0.92315 0.92282 0.91785 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.15 37.16 0.30 -2.76 16 2 C -0.15 -3.46 4.77 -26.73 -0.13 -3.59 16 3 C 0.21 5.15 1.63 -68.86 -0.11 5.03 16 4 H 0.05 1.35 5.21 -51.93 -0.27 1.08 16 5 C -0.49 -13.39 8.18 -34.44 -0.28 -13.67 16 6 H 0.06 1.66 7.75 -52.49 -0.41 1.25 16 7 C 0.06 1.57 5.29 -17.82 -0.09 1.47 16 8 N -0.89 -25.33 11.73 55.43 0.65 -24.68 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.53 -11.17 4.40 -220.01 -0.97 -12.13 16 14 C 0.06 1.20 4.33 -3.76 -0.02 1.18 16 15 C 0.06 0.95 6.71 -3.75 -0.03 0.92 16 16 N -0.69 -10.35 6.57 -106.63 -0.70 -11.05 16 17 C 0.09 1.48 2.43 -67.71 -0.16 1.32 16 18 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 19 C -0.11 -1.42 5.50 -26.74 -0.15 -1.57 16 20 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 21 C -0.12 -1.65 5.92 -26.72 -0.16 -1.81 16 22 C -0.11 -2.03 4.92 -26.74 -0.13 -2.16 16 23 C 0.08 1.41 1.20 -67.72 -0.08 1.33 16 24 H 0.06 1.16 4.11 -51.93 -0.21 0.95 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.88 5.20 -51.93 -0.27 0.61 16 27 H 0.05 0.94 7.19 -51.93 -0.37 0.57 16 28 H 0.09 2.26 6.42 -51.93 -0.33 1.93 16 29 H 0.04 0.93 6.02 -51.93 -0.31 0.62 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.08 1.62 7.64 -51.93 -0.40 1.22 16 32 H 0.04 0.77 5.23 -51.93 -0.27 0.50 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.33 4.16 8.83 -39.29 -0.35 3.81 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.08 1.53 5.75 -51.93 -0.30 1.24 16 LS Contribution 305.74 15.07 4.61 4.61 Total: -1.00 -27.70 305.74 -9.91 -37.61 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -7.28 Total: 5.10 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -1.20 Total: -15.88 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -1.02 Total: -47.86 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.70 -9.91 -37.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393778093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.941 kcal (2) G-P(sol) polarization free energy of solvation -27.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds