Wall clock time and date at job start Mon Mar 30 2020 04:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47121 * 2 1 4 4 H 1.09002 * 109.46880 * 306.11960 * 3 2 1 5 5 C 1.50703 * 109.46977 * 186.12523 * 3 2 1 6 6 H 1.07996 * 119.99993 * 245.60769 * 5 3 2 7 7 C 1.37878 * 119.99864 * 65.60756 * 5 3 2 8 8 N 1.31508 * 120.00286 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99783 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47343 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47172 * 120.00122 * 9 7 5 12 12 H 1.48504 * 109.47212 * 240.00283 * 9 7 5 13 13 N 1.46902 * 109.47289 * 66.12774 * 3 2 1 14 14 C 1.46997 * 110.99897 * 41.40935 * 13 3 2 15 15 C 1.53031 * 109.47464 * 177.05065 * 14 13 3 16 16 N 1.47003 * 109.47991 * 58.15038 * 15 14 13 17 17 C 1.46891 * 110.74777 * 300.82635 * 16 15 14 18 18 H 1.09002 * 109.46408 * 299.67763 * 17 16 15 19 19 C 1.52947 * 109.81080 * 179.48489 * 17 16 15 20 20 C 1.53036 * 109.34756 * 179.84399 * 19 17 16 21 21 C 1.52968 * 109.57326 * 59.88389 * 20 19 17 22 22 C 1.53049 * 109.57698 * 300.23571 * 21 20 19 23 23 C 1.46887 * 110.99588 * 277.82224 * 13 3 2 24 24 H 1.08993 * 109.48032 * 63.45701 * 23 13 3 25 25 H 1.08992 * 109.47021 * 160.31888 * 1 2 3 26 26 H 1.08999 * 109.47274 * 280.32402 * 1 2 3 27 27 H 1.09002 * 109.46602 * 40.32233 * 1 2 3 28 28 H 1.09001 * 109.47469 * 239.99696 * 2 1 3 29 29 H 1.09001 * 109.47075 * 119.99647 * 2 1 3 30 30 H 0.97006 * 120.00472 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47367 * 57.05586 * 14 13 3 32 32 H 1.08998 * 109.47732 * 297.05241 * 14 13 3 33 33 H 1.09000 * 109.46678 * 298.15000 * 15 14 13 34 34 H 1.09000 * 109.47114 * 178.15224 * 15 14 13 35 35 H 1.00899 * 110.99996 * 177.05630 * 16 15 14 36 36 H 1.08993 * 109.49384 * 59.87561 * 19 17 16 37 37 H 1.09002 * 109.50637 * 299.81620 * 19 17 16 38 38 H 1.08999 * 109.45253 * 179.90953 * 20 19 17 39 39 H 1.09007 * 109.45270 * 299.85693 * 20 19 17 40 40 H 1.09006 * 109.45155 * 60.28781 * 21 20 19 41 41 H 1.08998 * 109.45859 * 180.22655 * 21 20 19 42 42 H 1.09002 * 109.50569 * 299.95896 * 22 21 20 43 43 H 1.08999 * 109.51783 * 179.88086 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5900 1.9870 -0.8302 5 6 3.5394 1.4452 -0.1516 6 1 4.1630 1.8018 0.6547 7 6 4.1150 0.9923 -1.3198 8 7 3.3556 0.5584 -2.3019 9 14 5.9735 0.9962 -1.5080 10 1 6.5953 1.5295 -0.2693 11 1 6.4501 -0.3903 -1.7432 12 1 6.3525 1.8523 -2.6607 13 7 1.6748 2.0911 1.2665 14 6 1.8721 1.1783 2.4018 15 6 1.5523 1.9108 3.7068 16 7 0.1690 2.4064 3.6645 17 6 -0.0220 3.3201 2.5303 18 1 0.6493 4.1726 2.6336 19 6 -1.4697 3.8122 2.4992 20 6 -1.6558 4.7657 1.3166 21 6 -1.3353 4.0332 0.0125 22 6 0.1115 3.5351 0.0463 23 6 0.2903 2.5800 1.2273 24 1 -0.3903 1.7359 1.1171 25 1 -0.3633 -0.9676 -0.3461 26 1 -0.3634 0.1842 1.0110 27 1 -0.3632 0.7835 -0.6650 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7605 0.2394 -3.1236 31 1 2.9079 0.8394 2.4199 32 1 1.2104 0.3186 2.2961 33 1 2.2358 2.7511 3.8286 34 1 1.6669 1.2247 4.5460 35 1 -0.0821 2.8522 4.5341 36 1 -1.6958 4.3361 3.4278 37 1 -2.1413 2.9608 2.3891 38 1 -2.6876 5.1163 1.2919 39 1 -0.9855 5.6179 1.4285 40 1 -2.0093 3.1842 -0.1021 41 1 -1.4645 4.7150 -0.8281 42 1 0.7861 4.3838 0.1595 43 1 0.3381 3.0116 -0.8825 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393778093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:01 Heat of formation + Delta-G solvation = -16.161911 kcal Electronic energy + Delta-G solvation = -20733.378609 eV Core-core repulsion = 18005.063471 eV Total energy + Delta-G solvation = -2728.315137 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.19875 -37.74863 -36.32909 -34.39069 -32.42718 -31.05619 -30.65528 -29.13921 -26.36807 -24.73391 -24.03559 -22.99103 -21.42382 -20.66987 -20.25743 -18.33115 -17.41828 -16.61465 -16.35753 -15.99025 -15.77217 -15.37124 -15.24803 -14.74734 -14.43174 -13.96241 -13.92530 -13.45653 -13.21211 -13.09763 -12.86815 -12.76213 -12.69451 -12.55045 -12.20884 -12.18154 -12.07148 -11.82299 -11.76855 -11.54269 -11.25213 -11.06295 -10.76922 -10.71408 -10.30059 -9.38512 -8.64296 -8.08088 -6.16550 1.38756 1.40965 1.52258 2.43489 3.19499 3.24366 3.38593 3.83393 4.05989 4.08848 4.33588 4.34045 4.39735 4.40216 4.48059 4.54014 4.57354 4.62636 4.64404 4.66130 4.71574 4.94246 5.04320 5.06476 5.07236 5.09290 5.20408 5.25710 5.29228 5.31648 5.35648 5.41432 5.49219 5.59623 5.64524 5.77798 5.81519 6.08300 6.32454 6.54809 6.68923 6.86117 6.98197 7.51647 8.98173 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025140 B = 0.007470 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.508254 B = 3747.634122 C = 4060.050531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.139 4.139 3 C 0.218 3.782 4 H 0.024 0.976 5 C -0.509 4.509 6 H 0.046 0.954 7 C 0.012 3.988 8 N -0.919 5.919 9 Si 0.952 3.048 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.539 5.539 14 C 0.062 3.938 15 C 0.068 3.932 16 N -0.685 5.685 17 C 0.098 3.902 18 H 0.026 0.974 19 C -0.102 4.102 20 C -0.111 4.111 21 C -0.112 4.112 22 C -0.111 4.111 23 C 0.077 3.923 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.259 0.741 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.026 0.974 34 H 0.093 0.907 35 H 0.351 0.649 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.049 0.951 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.011 5.490 9.762 15.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.179 4.179 3 C 0.111 3.889 4 H 0.041 0.959 5 C -0.547 4.547 6 H 0.065 0.935 7 C -0.187 4.187 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.263 5.263 14 C -0.067 4.067 15 C -0.062 4.062 16 N -0.317 5.317 17 C -0.012 4.012 18 H 0.044 0.956 19 C -0.141 4.141 20 C -0.148 4.148 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.032 4.032 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.111 0.889 35 H 0.170 0.830 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.906 5.279 9.332 14.597 hybrid contribution 1.458 -0.230 -0.495 1.556 sum -8.448 5.049 8.837 13.227 Atomic orbital electron populations 1.21956 0.96712 1.00277 1.00378 1.22017 0.94186 1.01367 1.00294 1.19196 0.93953 0.88919 0.86788 0.95868 1.21436 0.92815 1.40440 1.00055 0.93531 1.25623 1.01923 0.95453 0.95665 1.70044 1.36024 1.44207 1.05705 0.85592 0.81169 0.77510 0.77839 1.19608 1.20711 1.20813 1.62431 1.21596 1.38293 1.03959 1.22029 0.99636 0.94293 0.90708 1.21948 0.88698 0.98427 0.97132 1.60517 1.23283 1.41362 1.06523 1.21502 0.97004 0.92483 0.90193 0.95644 1.21498 0.94020 0.99322 0.99211 1.21492 1.02352 0.97697 0.93305 1.21516 0.94563 1.00208 0.98737 1.21604 0.97606 0.98449 0.97309 1.21963 0.89867 0.96854 0.94511 0.92879 0.93544 0.92426 0.94023 0.93002 0.94363 0.93175 0.92619 0.95027 0.95582 0.88855 0.82996 0.90091 0.91510 0.89553 0.92133 0.92033 0.91167 0.93254 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.50 8.15 71.98 0.59 -4.92 16 2 C -0.14 -6.72 4.77 30.60 0.15 -6.57 16 3 C 0.22 11.09 1.63 44.17 0.07 11.17 16 4 H 0.02 1.32 5.21 -2.39 -0.01 1.31 16 5 C -0.51 -28.70 8.18 25.60 0.21 -28.49 16 6 H 0.05 2.68 7.75 -2.91 -0.02 2.66 16 7 C 0.01 0.65 5.29 84.66 0.45 1.10 16 8 N -0.92 -53.72 11.73 21.45 0.25 -53.47 16 9 Si 0.95 44.92 29.54 68.60 2.03 46.95 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 N -0.54 -23.37 4.40 -849.97 -3.74 -27.11 16 14 C 0.06 2.43 4.33 86.29 0.37 2.80 16 15 C 0.07 2.07 6.71 86.29 0.58 2.65 16 16 N -0.68 -18.75 6.57 -491.27 -3.23 -21.97 16 17 C 0.10 2.91 2.43 44.92 0.11 3.02 16 18 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 19 C -0.10 -2.30 5.50 30.59 0.17 -2.13 16 20 C -0.11 -2.37 5.92 30.60 0.18 -2.19 16 21 C -0.11 -2.98 5.92 30.60 0.18 -2.80 16 22 C -0.11 -4.00 4.92 30.59 0.15 -3.85 16 23 C 0.08 2.79 1.20 44.92 0.05 2.84 16 24 H 0.05 2.02 4.11 -2.39 -0.01 2.01 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.06 2.18 5.20 -2.39 -0.01 2.17 16 27 H 0.04 1.70 7.19 -2.39 -0.02 1.68 16 28 H 0.05 2.85 6.42 -2.39 -0.02 2.83 16 29 H 0.04 1.82 6.02 -2.39 -0.01 1.80 16 30 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 31 H 0.06 2.39 7.64 -2.39 -0.02 2.37 16 32 H 0.03 1.27 5.23 -2.39 -0.01 1.26 16 33 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.35 7.50 8.83 -89.70 -0.79 6.71 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 39 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.04 1.79 5.75 -2.39 -0.01 1.78 16 Total: -1.00 -61.54 305.74 -1.23 -62.77 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.20 Total: 20.21 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 3.26 Total: -27.38 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -6.71 Total: -102.55 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -61.54 -1.23 -62.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393778093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.608 kcal (2) G-P(sol) polarization free energy of solvation -61.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds