Wall clock time and date at job start Mon Mar 30 2020 04:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47041 * 2 1 4 4 H 1.09000 * 109.46716 * 302.93817 * 3 2 1 5 5 C 1.50698 * 109.46773 * 182.94251 * 3 2 1 6 6 H 1.08000 * 119.99752 * 245.20744 * 5 3 2 7 7 C 1.37878 * 120.00153 * 65.20882 * 5 3 2 8 8 N 1.31515 * 120.00161 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99914 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47006 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47107 * 120.00107 * 9 7 5 12 12 H 1.48500 * 109.46802 * 240.00106 * 9 7 5 13 13 N 1.46899 * 109.47208 * 62.94247 * 3 2 1 14 14 C 1.46962 * 110.99945 * 165.43948 * 13 3 2 15 15 C 1.53033 * 109.42821 * 176.81871 * 14 13 3 16 16 N 1.46980 * 109.41233 * 58.24396 * 15 14 13 17 17 C 1.46908 * 110.82112 * 300.85632 * 16 15 14 18 18 H 1.08995 * 109.42438 * 299.81463 * 17 16 15 19 19 C 1.52896 * 109.65743 * 179.79288 * 17 16 15 20 20 C 1.52993 * 109.57600 * 299.58162 * 19 17 16 21 21 C 1.53020 * 109.40017 * 300.05707 * 20 19 17 22 22 C 1.52973 * 109.43560 * 60.15616 * 21 20 19 23 23 C 1.47049 * 110.99974 * 41.77365 * 13 3 2 24 24 H 1.09000 * 109.56177 * 303.36279 * 23 13 3 25 25 H 1.08994 * 109.47083 * 66.83037 * 1 2 3 26 26 H 1.09001 * 109.47034 * 186.82981 * 1 2 3 27 27 H 1.09006 * 109.46939 * 306.83240 * 1 2 3 28 28 H 1.08998 * 109.47302 * 239.99830 * 2 1 3 29 29 H 1.09002 * 109.47101 * 119.99623 * 2 1 3 30 30 H 0.97000 * 120.00097 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.47309 * 296.80356 * 14 13 3 32 32 H 1.08997 * 109.47877 * 56.82785 * 14 13 3 33 33 H 1.08998 * 109.48666 * 178.23329 * 15 14 13 34 34 H 1.09005 * 109.47813 * 298.27055 * 15 14 13 35 35 H 1.00901 * 110.99106 * 64.67866 * 16 15 14 36 36 H 1.08996 * 109.45780 * 59.61740 * 19 17 16 37 37 H 1.09004 * 109.45272 * 179.57504 * 19 17 16 38 38 H 1.09004 * 109.47764 * 60.02737 * 20 19 17 39 39 H 1.08993 * 109.48828 * 180.02562 * 20 19 17 40 40 H 1.09007 * 109.47309 * 180.13976 * 21 20 19 41 41 H 1.08999 * 109.47559 * 300.15400 * 21 20 19 42 42 H 1.09000 * 109.46148 * 59.87174 * 22 21 20 43 43 H 1.08997 * 109.46417 * 179.84878 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6343 1.9713 -0.8625 5 6 3.5452 1.4431 -0.0729 6 1 4.1258 1.8209 0.7556 7 6 4.1812 0.9613 -1.1974 8 7 3.4742 0.5008 -2.2062 9 14 6.0470 0.9627 -1.2881 10 1 6.6032 1.5280 -0.0325 11 1 6.5352 -0.4289 -1.4626 12 1 6.4859 1.7895 -2.4409 13 7 1.6093 2.1142 1.2334 14 6 2.3516 3.3659 1.4383 15 6 1.8209 4.0740 2.6868 16 7 1.9593 3.1846 3.8488 17 6 1.2167 1.9343 3.6408 18 1 0.1599 2.1598 3.4980 19 6 1.3828 1.0283 4.8612 20 6 2.8641 0.7005 5.0584 21 6 3.3963 -0.0150 3.8148 22 6 3.2353 0.8952 2.5959 23 6 1.7545 1.2254 2.3958 24 1 1.1909 0.3079 2.2263 25 1 -0.3633 0.4043 -0.9447 26 1 -0.3633 -1.0204 0.1222 27 1 -0.3633 0.6161 0.8226 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.9215 0.1622 -2.9975 31 1 3.4106 3.1431 1.5692 32 1 2.2207 4.0123 0.5705 33 1 2.3917 4.9867 2.8575 34 1 0.7696 4.3239 2.5437 35 1 2.9309 2.9993 4.0484 36 1 1.0029 1.5383 5.7464 37 1 0.8245 0.1050 4.7065 38 1 3.4230 1.6233 5.2139 39 1 2.9808 0.0543 5.9283 40 1 4.4511 -0.2514 3.9551 41 1 2.8352 -0.9361 3.6575 42 1 3.7946 1.8171 2.7547 43 1 3.6167 0.3870 1.7103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393778095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:04 Heat of formation + Delta-G solvation = 4.464801 kcal Electronic energy + Delta-G solvation = -21139.476430 eV Core-core repulsion = 18412.055734 eV Total energy + Delta-G solvation = -2727.420696 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.19466 -36.03273 -34.49343 -32.23465 -31.23207 -29.60198 -29.04859 -26.91601 -25.07001 -22.91017 -22.27793 -21.93941 -20.60359 -19.11783 -17.91613 -16.73041 -15.62851 -15.19439 -14.79605 -14.58854 -14.11187 -13.62452 -13.21481 -13.10726 -12.73374 -12.55740 -12.28373 -11.97996 -11.70590 -11.66447 -11.23971 -11.18466 -10.95259 -10.92667 -10.67115 -10.62051 -10.50197 -10.23134 -10.14666 -9.89091 -9.59999 -9.42887 -9.38190 -8.90223 -8.37383 -7.81104 -7.06848 -6.02920 -4.12421 3.21594 3.31150 3.33044 4.35525 4.69963 4.91206 5.17710 5.19591 5.29242 5.41935 5.69128 5.75319 5.85854 5.89130 5.95346 5.98103 6.02410 6.11807 6.16061 6.25669 6.29305 6.37957 6.44153 6.46253 6.52965 6.54891 6.57569 6.74973 6.81192 6.96680 6.99199 7.14370 7.23484 7.27857 7.52649 7.64950 7.68798 7.81643 7.95698 8.10726 8.35395 8.42619 8.95709 9.51860 10.97399 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021268 B = 0.009093 C = 0.008466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.207517 B = 3078.554342 C = 3306.514542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.213 3.787 4 H 0.042 0.958 5 C -0.542 4.542 6 H 0.069 0.931 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.527 5.527 14 C 0.024 3.976 15 C 0.057 3.943 16 N -0.683 5.683 17 C 0.092 3.908 18 H 0.077 0.923 19 C -0.108 4.108 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.162 4.162 23 C 0.059 3.941 24 H 0.084 0.916 25 H 0.040 0.960 26 H 0.026 0.974 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.260 0.740 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.334 0.666 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.555 0.954 10.341 10.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C 0.107 3.893 4 H 0.059 0.941 5 C -0.581 4.581 6 H 0.087 0.913 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.710 3.290 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.250 5.250 14 C -0.106 4.106 15 C -0.073 4.073 16 N -0.314 5.314 17 C -0.018 4.018 18 H 0.095 0.905 19 C -0.147 4.147 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.200 4.200 23 C -0.051 4.051 24 H 0.102 0.898 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.153 0.847 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.572 1.324 10.444 11.117 hybrid contribution 2.614 -0.730 -0.899 2.859 sum -0.958 0.594 9.544 9.611 Atomic orbital electron populations 1.21793 0.98769 0.98673 1.00873 1.21728 0.92366 0.99585 1.01715 1.19284 0.92877 0.90457 0.86724 0.94053 1.21993 0.92757 1.41434 1.01926 0.91343 1.24939 0.97644 0.95292 0.95668 1.69924 1.34860 1.41428 1.05932 0.86704 0.86603 0.77685 0.78020 1.19922 1.21083 1.21067 1.62840 1.54675 1.04244 1.03214 1.22613 0.97250 0.92966 0.97730 1.22118 1.01481 0.95004 0.88735 1.60968 1.16775 1.15224 1.38424 1.21559 0.98239 0.88805 0.93239 0.90512 1.21494 0.96471 0.98856 0.97830 1.21545 0.96380 1.00046 0.97720 1.21589 0.99900 0.99001 0.95314 1.22735 0.98492 0.99464 0.99356 1.22282 0.94872 0.96876 0.91112 0.89817 0.94043 0.95495 0.93033 0.89987 0.94195 0.93003 0.93552 0.91571 0.91664 0.91144 0.84730 0.91883 0.91935 0.92233 0.92834 0.93009 0.92529 0.93203 0.87070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.43 37.16 0.35 -2.48 16 2 C -0.12 -2.61 4.64 -26.73 -0.12 -2.73 16 3 C 0.21 5.01 1.98 -68.86 -0.14 4.87 16 4 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 5 C -0.54 -13.59 5.29 -34.44 -0.18 -13.77 16 6 H 0.07 1.71 4.09 -52.49 -0.21 1.49 16 7 C 0.07 1.77 5.31 -17.82 -0.09 1.67 16 8 N -0.88 -24.30 11.70 55.43 0.65 -23.66 16 9 Si 0.88 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.53 -10.62 4.21 -219.87 -0.93 -11.55 16 14 C 0.02 0.47 4.65 -3.77 -0.02 0.45 16 15 C 0.06 0.90 6.72 -3.76 -0.03 0.88 16 16 N -0.68 -10.55 6.47 -106.68 -0.69 -11.24 16 17 C 0.09 1.45 2.87 -67.75 -0.19 1.25 16 18 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 19 C -0.11 -1.46 5.63 -26.79 -0.15 -1.61 16 20 C -0.12 -1.58 5.67 -26.72 -0.15 -1.73 16 21 C -0.12 -1.83 5.92 -26.73 -0.16 -1.99 16 22 C -0.16 -2.96 2.97 -26.73 -0.08 -3.04 16 23 C 0.06 1.06 1.43 -67.60 -0.10 0.97 16 24 H 0.08 1.59 5.13 -51.93 -0.27 1.32 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.98 6.77 -51.93 -0.35 0.63 16 28 H 0.08 2.10 6.43 -51.93 -0.33 1.76 16 29 H 0.04 0.88 5.27 -51.93 -0.27 0.60 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.05 0.96 4.50 -51.93 -0.23 0.73 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.33 5.16 5.33 -39.29 -0.21 4.95 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.80 6.60 -51.93 -0.34 0.45 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.05 0.94 4.76 -51.93 -0.25 0.69 16 43 H 0.11 2.43 4.56 -51.93 -0.24 2.20 16 LS Contribution 295.19 15.07 4.45 4.45 Total: -1.00 -25.45 295.19 -9.52 -34.97 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.92 Total: 8.69 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -1.06 Total: -17.26 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.97 Total: -46.45 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -25.45 -9.52 -34.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393778095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.431 kcal (2) G-P(sol) polarization free energy of solvation -25.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds