Wall clock time and date at job start Mon Mar 30 2020 04:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47116 * 2 1 4 4 H 1.09004 * 109.47018 * 177.53066 * 3 2 1 5 5 C 1.50690 * 109.47409 * 57.52625 * 3 2 1 6 6 H 1.07998 * 120.00221 * 240.00227 * 5 3 2 7 7 C 1.37875 * 120.00233 * 59.99697 * 5 3 2 8 8 N 1.31521 * 119.99626 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00440 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47443 * 90.00162 * 9 7 5 11 11 H 1.48503 * 109.47043 * 210.00235 * 9 7 5 12 12 H 1.48504 * 109.46828 * 330.00040 * 9 7 5 13 13 N 1.46903 * 109.47193 * 297.52365 * 3 2 1 14 14 C 1.46903 * 111.00039 * 274.41263 * 13 3 2 15 15 H 1.08994 * 109.03712 * 33.09871 * 14 13 3 16 16 C 1.52528 * 109.04703 * 274.12310 * 14 13 3 17 17 C 1.53805 * 111.69696 * 293.54521 * 16 14 13 18 18 C 1.51624 * 107.04418 * 302.43696 * 17 16 14 19 19 H 1.09003 * 110.50523 * 304.74710 * 18 17 16 20 20 C 1.53078 * 116.61450 * 176.27395 * 18 17 16 21 21 N 1.49063 * 103.42017 * 204.05600 * 20 18 17 22 22 C 1.48649 * 108.29920 * 24.34570 * 21 20 18 23 23 C 1.52325 * 105.83477 * 3.21146 * 22 21 20 24 24 H 1.09008 * 110.20077 * 87.79716 * 23 22 21 25 25 C 1.51453 * 117.41301 * 214.56158 * 23 22 21 26 26 H 1.09000 * 109.47034 * 294.55235 * 1 2 3 27 27 H 1.09003 * 109.46983 * 54.55170 * 1 2 3 28 28 H 1.09000 * 109.46982 * 174.54974 * 1 2 3 29 29 H 1.08997 * 109.46969 * 119.99884 * 2 1 3 30 30 H 1.09005 * 109.47238 * 239.99821 * 2 1 3 31 31 H 0.97010 * 119.99566 * 179.97438 * 8 7 5 32 32 H 1.00898 * 111.00055 * 150.45680 * 13 3 2 33 33 H 1.09003 * 109.03271 * 54.11172 * 16 14 13 34 34 H 1.08997 * 109.03400 * 172.96776 * 16 14 13 35 35 H 1.09000 * 109.94073 * 61.82448 * 17 16 14 36 36 H 1.09003 * 109.93992 * 183.05117 * 17 16 14 37 37 H 1.09004 * 110.62998 * 322.53561 * 20 18 17 38 38 H 1.09005 * 110.63058 * 85.56861 * 20 18 17 39 39 H 1.00895 * 111.00246 * 146.44453 * 21 20 18 40 40 H 1.09002 * 110.18199 * 244.11471 * 22 21 20 41 41 H 1.09009 * 110.23851 * 122.33413 * 22 21 20 42 42 H 1.08999 * 109.93348 * 59.47954 * 25 23 22 43 43 H 1.08990 * 109.93534 * 298.24653 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4428 0.0443 5 6 1.4883 2.1704 1.1986 6 1 0.8722 3.0468 1.0617 7 6 1.7699 1.7176 2.4700 8 7 2.5206 0.6505 2.6367 9 14 1.0855 2.6194 3.9558 10 1 -0.2380 2.0495 4.3144 11 1 2.0178 2.4650 5.1013 12 1 0.9326 4.0608 3.6327 13 7 1.5998 2.1175 -1.2282 14 6 2.5368 1.8669 -2.3315 15 1 2.9580 0.8678 -2.2202 16 6 3.6643 2.8922 -2.2697 17 6 3.1550 4.3153 -2.5542 18 6 2.4999 4.2878 -3.9213 19 1 3.1944 3.9064 -4.6699 20 6 1.8335 5.5843 -4.3887 21 7 0.8234 5.1163 -5.3799 22 6 0.4804 3.7044 -5.0657 23 6 1.2569 3.3596 -3.8014 24 1 0.6770 3.6286 -2.9184 25 6 1.7738 1.9425 -3.6652 26 1 -0.3633 0.4270 0.9348 27 1 -0.3633 0.5960 -0.8372 28 1 -0.3633 -1.0230 -0.0976 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 2.7190 0.3321 3.5313 32 1 1.4797 3.1073 -1.0737 33 1 4.1134 2.8673 -1.2768 34 1 4.4226 2.6317 -3.0080 35 1 2.4258 4.6072 -1.7984 36 1 3.9902 5.0157 -2.5562 37 1 1.3471 6.0887 -3.5537 38 1 2.5623 6.2411 -4.8637 39 1 0.0012 5.7008 -5.3619 40 1 0.7856 3.0522 -5.8840 41 1 -0.5906 3.6072 -4.8875 42 1 2.4459 1.7111 -4.4915 43 1 0.9391 1.2417 -3.6563 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400992608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:02 Heat of formation + Delta-G solvation = -13.566164 kcal Electronic energy + Delta-G solvation = -20050.138337 eV Core-core repulsion = 17321.935760 eV Total energy + Delta-G solvation = -2728.202577 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.01329 -36.74224 -34.43067 -31.93538 -31.18756 -30.19308 -28.19695 -27.07708 -25.46906 -23.23747 -22.82369 -20.78204 -20.58990 -19.76861 -18.22458 -16.50468 -16.05588 -15.10983 -14.94503 -14.59331 -14.03200 -13.94484 -13.48596 -13.18819 -12.88753 -12.83050 -12.36003 -12.07418 -11.84980 -11.72399 -11.53575 -11.38837 -11.09425 -10.93506 -10.75203 -10.64039 -10.42773 -10.25053 -10.03664 -9.94511 -9.59962 -9.53307 -9.32928 -8.75595 -8.47588 -8.44969 -7.16263 -6.01728 -4.06611 3.28200 3.35255 3.37414 4.23205 4.39757 4.59018 4.83081 5.02657 5.22572 5.30297 5.34548 5.46548 5.49436 5.60291 5.70999 5.75294 5.81234 5.87007 5.96035 6.05698 6.10806 6.23083 6.27987 6.46157 6.51802 6.55413 6.59408 6.67296 6.72914 6.73834 6.84892 6.90206 7.25696 7.32989 7.37377 7.53069 7.75402 7.81065 7.87552 8.28673 8.43807 8.71467 9.03817 9.58162 11.04249 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.027062 B = 0.006015 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.422419 B = 4654.279712 C = 4931.233212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.216 3.784 4 H 0.000 1.000 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.679 5.679 14 C 0.088 3.912 15 H 0.068 0.932 16 C -0.144 4.144 17 C -0.103 4.103 18 C -0.100 4.100 19 H 0.078 0.922 20 C 0.051 3.949 21 N -0.687 5.687 22 C 0.052 3.948 23 C -0.111 4.111 24 H 0.083 0.917 25 C -0.087 4.087 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.011 0.989 29 H 0.083 0.917 30 H 0.009 0.991 31 H 0.260 0.740 32 H 0.329 0.671 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.334 0.666 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.744 5.622 -12.046 13.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.018 0.982 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.311 5.311 14 C -0.024 4.024 15 H 0.087 0.913 16 C -0.183 4.183 17 C -0.141 4.141 18 C -0.119 4.119 19 H 0.096 0.904 20 C -0.078 4.078 21 N -0.315 5.315 22 C -0.077 4.077 23 C -0.131 4.131 24 H 0.101 0.899 25 C -0.125 4.125 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.030 0.970 29 H 0.101 0.899 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.148 0.852 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.633 4.843 -12.591 13.505 hybrid contribution -0.110 1.059 2.031 2.294 sum -0.743 5.903 -10.559 12.120 Atomic orbital electron populations 1.21429 0.97597 0.97012 1.01487 1.21426 0.95028 0.98385 0.99134 1.19108 0.93289 0.91492 0.85255 0.98227 1.21169 1.31446 1.11841 0.90468 0.92582 1.24869 0.95119 0.95022 0.98768 1.69895 1.37550 1.23231 1.22060 0.86623 0.78861 0.80086 0.82575 1.20682 1.21353 1.20071 1.60808 1.47250 1.15766 1.07262 1.21531 0.90945 0.97627 0.92252 0.91336 1.22187 0.99181 0.95131 1.01823 1.21294 1.00017 0.97137 0.95653 1.22035 0.97284 0.95126 0.97493 0.90375 1.22596 0.94810 0.96892 0.93505 1.62625 1.15145 1.03266 1.50496 1.22340 0.98389 0.89814 0.97112 1.22063 0.95976 0.96954 0.98087 0.89861 1.21274 0.99462 0.95276 0.96508 0.93053 0.93478 0.97004 0.89859 0.97231 0.93031 0.85258 0.91534 0.92879 0.91486 0.92338 0.93687 0.90766 0.85189 0.91027 0.92885 0.92765 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.45 37.16 0.35 -2.29 16 2 C -0.10 -2.43 5.55 -26.73 -0.15 -2.57 16 3 C 0.22 5.20 2.06 -68.87 -0.14 5.06 16 4 H 0.00 0.00 7.12 -51.93 -0.37 -0.37 16 5 C -0.51 -13.42 7.31 -34.45 -0.25 -13.67 16 6 H 0.06 1.47 7.61 -52.49 -0.40 1.08 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.90 11.35 55.43 0.63 -24.27 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.68 -13.49 4.76 -100.75 -0.48 -13.97 16 14 C 0.09 1.49 2.57 -67.51 -0.17 1.31 16 15 H 0.07 1.28 7.11 -51.93 -0.37 0.91 16 16 C -0.14 -2.26 5.33 -26.55 -0.14 -2.40 16 17 C -0.10 -1.43 5.45 -27.01 -0.15 -1.57 16 18 C -0.10 -1.28 2.49 -89.89 -0.22 -1.50 16 19 H 0.08 1.03 8.02 -51.93 -0.42 0.61 16 20 C 0.05 0.59 7.22 -2.58 -0.02 0.57 16 21 N -0.69 -7.98 7.48 -111.09 -0.83 -8.81 16 22 C 0.05 0.63 7.30 -3.20 -0.02 0.61 16 23 C -0.11 -1.50 2.22 -90.36 -0.20 -1.70 16 24 H 0.08 1.27 6.61 -51.92 -0.34 0.93 16 25 C -0.09 -1.25 5.40 -27.07 -0.15 -1.40 16 26 H 0.05 1.24 7.36 -51.93 -0.38 0.86 16 27 H 0.05 1.01 7.52 -51.93 -0.39 0.62 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 2.23 6.14 -51.93 -0.32 1.91 16 30 H 0.01 0.21 7.46 -51.93 -0.39 -0.18 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.33 6.55 5.39 -39.29 -0.21 6.34 16 33 H 0.07 1.20 7.37 -51.93 -0.38 0.82 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.01 6.59 -51.93 -0.34 0.67 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.33 3.34 8.93 -39.29 -0.35 2.99 16 40 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 41 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 42 H 0.05 0.72 8.03 -51.93 -0.42 0.31 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 316.73 15.07 4.77 4.77 Total: -1.00 -26.64 316.73 -9.88 -36.53 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.59 Total: 7.69 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -1.36 Total: -17.93 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.68 Total: -47.06 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.64 -9.88 -36.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400992608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.959 kcal (2) G-P(sol) polarization free energy of solvation -26.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds