Wall clock time and date at job start Mon Mar 30 2020 04:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46904 * 2 1 4 4 H 1.09005 * 109.47152 * 304.48934 * 3 2 1 5 5 C 1.50707 * 109.46916 * 184.49304 * 3 2 1 6 6 H 1.08003 * 119.99563 * 240.00155 * 5 3 2 7 7 C 1.37873 * 120.00286 * 59.99801 * 5 3 2 8 8 N 1.31519 * 119.99908 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99980 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47579 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47113 * 120.00416 * 9 7 5 12 12 H 1.48507 * 109.47223 * 239.99914 * 9 7 5 13 13 N 1.46897 * 109.47325 * 64.49285 * 3 2 1 14 14 C 1.46903 * 111.00062 * 208.97583 * 13 3 2 15 15 H 1.08999 * 109.76692 * 32.51373 * 14 13 3 16 16 C 1.53321 * 109.73531 * 271.83593 * 14 13 3 17 17 C 1.52590 * 108.41471 * 176.24746 * 16 14 13 18 18 C 1.53003 * 111.04761 * 62.34197 * 17 16 14 19 19 H 1.09003 * 112.06202 * 73.89470 * 18 17 16 20 20 C 1.55338 * 106.43843 * 197.06283 * 18 17 16 21 21 N 1.47594 * 106.92638 * 91.56033 * 20 18 17 22 22 C 1.48237 * 108.56687 * 1.01161 * 21 20 18 23 23 C 1.53915 * 104.02828 * 23.33027 * 22 21 20 24 24 H 1.08997 * 109.19800 * 77.26421 * 23 22 21 25 25 C 1.50746 * 112.99972 * 198.47051 * 23 22 21 26 26 H 1.08995 * 109.47167 * 294.94903 * 1 2 3 27 27 H 1.08996 * 109.47069 * 54.95594 * 1 2 3 28 28 H 1.09003 * 109.46610 * 174.95000 * 1 2 3 29 29 H 1.09005 * 109.47183 * 239.99785 * 2 1 3 30 30 H 1.09005 * 109.47085 * 119.99879 * 2 1 3 31 31 H 0.97000 * 119.99732 * 180.02562 * 8 7 5 32 32 H 1.00902 * 111.00312 * 85.02294 * 13 3 2 33 33 H 1.08997 * 109.67848 * 56.51796 * 16 14 13 34 34 H 1.09001 * 109.67609 * 295.97922 * 16 14 13 35 35 H 1.08998 * 109.16703 * 182.74478 * 17 16 14 36 36 H 1.08997 * 109.16578 * 301.98841 * 17 16 14 37 37 H 1.08996 * 109.97105 * 210.92345 * 20 18 17 38 38 H 1.08999 * 109.96520 * 332.19811 * 20 18 17 39 39 H 1.00893 * 111.00377 * 123.28098 * 21 20 18 40 40 H 1.08995 * 110.52257 * 141.96728 * 22 21 20 41 41 H 1.09009 * 110.51930 * 264.69908 * 22 21 20 42 42 H 1.08997 * 109.03059 * 185.69313 * 25 23 22 43 43 H 1.08998 * 109.02571 * 304.53240 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6124 1.9790 -0.8471 5 6 3.5429 1.4440 -0.1113 6 1 4.1416 1.8908 0.6686 7 6 4.1535 0.8748 -1.2086 8 7 3.4243 0.3310 -2.1585 9 14 6.0163 0.8773 -1.3469 10 1 6.6002 1.5458 -0.1564 11 1 6.5091 -0.5217 -1.4198 12 1 6.4207 1.6091 -2.5742 13 7 1.6409 2.1030 1.2499 14 6 1.4719 3.5486 1.0508 15 1 1.1125 3.7420 0.0401 16 6 2.8117 4.2614 1.2693 17 6 2.6239 5.7446 0.9641 18 6 1.6101 6.3781 1.9191 19 1 2.0214 6.5180 2.9189 20 6 1.1713 7.7186 1.2684 21 7 -0.0214 7.4282 0.4488 22 6 -0.3479 5.9886 0.5841 23 6 0.2896 5.5858 1.9258 24 1 -0.3384 5.9422 2.7423 25 6 0.4713 4.0962 2.0680 26 1 -0.3633 0.4335 0.9317 27 1 -0.3633 0.5901 -0.8413 28 1 -0.3633 -1.0237 -0.0905 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8539 -0.0697 -2.9304 32 1 2.3044 1.9146 1.9864 33 1 3.5639 3.8417 0.6014 34 1 3.1291 4.1370 2.3046 35 1 3.5812 6.2554 1.0683 36 1 2.2682 5.8571 -0.0600 37 1 0.9231 8.4445 2.0426 38 1 1.9714 8.1054 0.6373 39 1 -0.8014 8.0037 0.7287 40 1 -1.4277 5.8430 0.6152 41 1 0.0920 5.4185 -0.2343 42 1 0.8302 3.8762 3.0734 43 1 -0.4905 3.6051 1.9201 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400992610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:05 Heat of formation + Delta-G solvation = -20.629297 kcal Electronic energy + Delta-G solvation = -19981.593699 eV Core-core repulsion = 17253.084842 eV Total energy + Delta-G solvation = -2728.508858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.97243 -36.58868 -34.18273 -31.97743 -31.34507 -30.62314 -28.26520 -26.96333 -25.39541 -22.83177 -22.08278 -21.71493 -20.47804 -19.56661 -18.31917 -16.85056 -16.29917 -15.31157 -14.84486 -14.03464 -13.92957 -13.88888 -13.26871 -13.20098 -12.97625 -12.69375 -12.42027 -12.27480 -11.94542 -11.44533 -11.33598 -11.26337 -11.04998 -10.98856 -10.72842 -10.66864 -10.65097 -10.31289 -10.04803 -9.85566 -9.82108 -9.50640 -9.25745 -8.89886 -8.40519 -8.35080 -7.18059 -5.97671 -4.09557 3.26411 3.35353 3.37748 4.26704 4.40589 4.66776 4.79882 4.95042 5.24103 5.27626 5.39262 5.46536 5.51596 5.64164 5.70586 5.80700 5.90098 5.95335 6.07508 6.09668 6.21739 6.33888 6.39908 6.43142 6.52003 6.52780 6.56519 6.66610 6.74763 6.83112 6.92130 7.05808 7.19236 7.20271 7.39054 7.50015 7.63259 7.80844 8.13701 8.19444 8.39279 8.71979 9.04231 9.57530 11.02566 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022523 B = 0.006667 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.898813 B = 4198.922421 C = 4937.662035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.216 3.784 4 H 0.030 0.970 5 C -0.539 4.539 6 H 0.056 0.944 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.686 5.686 14 C 0.102 3.898 15 H 0.069 0.931 16 C -0.149 4.149 17 C -0.106 4.106 18 C -0.100 4.100 19 H 0.080 0.920 20 C 0.047 3.953 21 N -0.687 5.687 22 C 0.051 3.949 23 C -0.107 4.107 24 H 0.059 0.941 25 C -0.095 4.095 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.023 0.977 29 H 0.089 0.911 30 H 0.029 0.971 31 H 0.260 0.740 32 H 0.328 0.672 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.332 0.668 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.055 0.945 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.567 10.497 7.312 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.109 3.891 4 H 0.048 0.952 5 C -0.578 4.578 6 H 0.074 0.926 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.314 5.314 14 C -0.009 4.009 15 H 0.088 0.912 16 C -0.188 4.188 17 C -0.144 4.144 18 C -0.119 4.119 19 H 0.098 0.902 20 C -0.082 4.082 21 N -0.314 5.314 22 C -0.078 4.078 23 C -0.127 4.127 24 H 0.077 0.923 25 C -0.133 4.133 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.107 0.893 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.144 0.856 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.147 0.853 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.892 10.197 6.402 13.405 hybrid contribution 1.702 0.274 0.719 1.868 sum -4.190 10.471 7.121 13.339 Atomic orbital electron populations 1.21682 0.99108 0.98179 1.00298 1.21510 0.92011 0.99467 1.01552 1.19191 0.92785 0.91058 0.86109 0.95191 1.21933 0.92690 1.37609 1.05609 0.92554 1.24934 0.97725 0.95107 0.95809 1.69891 1.34668 1.38261 1.09516 0.86656 0.86391 0.77715 0.77919 1.19947 1.21031 1.21103 1.60873 1.52790 1.07160 1.10537 1.21385 0.92911 0.88764 0.97796 0.91241 1.22370 1.00386 0.94681 1.01386 1.21479 0.97420 0.96329 0.99208 1.22348 0.96025 0.94589 0.98961 0.90208 1.22991 0.93765 0.96628 0.94794 1.61817 1.07301 1.05447 1.56865 1.22869 0.99240 0.88435 0.97250 1.21803 0.96185 0.96848 0.97879 0.92264 1.20892 1.00326 0.92276 0.99848 0.93518 0.94526 0.95792 0.89292 0.95176 0.93004 0.85593 0.89692 0.93138 0.92981 0.91589 0.93792 0.90765 0.85280 0.91827 0.89716 0.92643 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.73 37.16 0.36 -2.43 16 2 C -0.11 -2.54 5.45 -26.73 -0.15 -2.69 16 3 C 0.22 5.22 2.00 -68.86 -0.14 5.08 16 4 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 5 C -0.54 -14.07 7.26 -34.44 -0.25 -14.32 16 6 H 0.06 1.46 6.78 -52.48 -0.36 1.10 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.84 11.30 55.43 0.63 -24.21 16 9 Si 0.88 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 13 N -0.69 -13.90 5.60 -100.87 -0.56 -14.46 16 14 C 0.10 1.82 2.31 -67.64 -0.16 1.67 16 15 H 0.07 1.38 6.01 -51.93 -0.31 1.07 16 16 C -0.15 -2.57 4.99 -26.78 -0.13 -2.71 16 17 C -0.11 -1.58 4.63 -26.94 -0.12 -1.70 16 18 C -0.10 -1.26 3.60 -88.86 -0.32 -1.58 16 19 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 20 C 0.05 0.55 6.88 -2.20 -0.02 0.54 16 21 N -0.69 -8.30 7.41 -110.35 -0.82 -9.12 16 22 C 0.05 0.66 6.52 -2.61 -0.02 0.64 16 23 C -0.11 -1.37 2.81 -90.75 -0.25 -1.62 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 C -0.09 -1.40 4.99 -27.95 -0.14 -1.54 16 26 H 0.05 0.92 7.88 -51.93 -0.41 0.51 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 2.37 5.96 -51.93 -0.31 2.06 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.33 6.67 8.03 -39.29 -0.32 6.36 16 33 H 0.08 1.74 6.04 -51.93 -0.31 1.43 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.07 7.15 -51.93 -0.37 0.70 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.90 7.74 -51.93 -0.40 0.49 16 39 H 0.33 3.32 8.91 -39.30 -0.35 2.97 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.29 6.14 -51.92 -0.32 0.97 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 317.48 15.07 4.78 4.78 Total: -1.00 -26.58 317.48 -10.04 -36.63 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -7.62 Total: 9.38 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -1.43 Total: -18.97 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.76 Total: -47.79 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.58 -10.04 -36.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400992610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.998 kcal (2) G-P(sol) polarization free energy of solvation -26.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds