Wall clock time and date at job start Mon Mar 30 2020 04:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46904 * 2 1 4 4 H 1.09005 * 109.47152 * 304.48934 * 3 2 1 5 5 C 1.50707 * 109.46916 * 184.49304 * 3 2 1 6 6 H 1.08003 * 119.99563 * 240.00155 * 5 3 2 7 7 C 1.37873 * 120.00286 * 59.99801 * 5 3 2 8 8 N 1.31519 * 119.99908 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99980 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47579 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47113 * 120.00416 * 9 7 5 12 12 H 1.48507 * 109.47223 * 239.99914 * 9 7 5 13 13 N 1.46897 * 109.47325 * 64.49285 * 3 2 1 14 14 C 1.46903 * 111.00062 * 208.97583 * 13 3 2 15 15 H 1.08999 * 109.76692 * 32.51373 * 14 13 3 16 16 C 1.53321 * 109.73531 * 271.83593 * 14 13 3 17 17 C 1.52590 * 108.41471 * 176.24746 * 16 14 13 18 18 C 1.53003 * 111.04761 * 62.34197 * 17 16 14 19 19 H 1.09003 * 112.06202 * 73.89470 * 18 17 16 20 20 C 1.55338 * 106.43843 * 197.06283 * 18 17 16 21 21 N 1.47594 * 106.92638 * 91.56033 * 20 18 17 22 22 C 1.48237 * 108.56687 * 1.01161 * 21 20 18 23 23 C 1.53915 * 104.02828 * 23.33027 * 22 21 20 24 24 H 1.08997 * 109.19800 * 77.26421 * 23 22 21 25 25 C 1.50746 * 112.99972 * 198.47051 * 23 22 21 26 26 H 1.08995 * 109.47167 * 294.94903 * 1 2 3 27 27 H 1.08996 * 109.47069 * 54.95594 * 1 2 3 28 28 H 1.09003 * 109.46610 * 174.95000 * 1 2 3 29 29 H 1.09005 * 109.47183 * 239.99785 * 2 1 3 30 30 H 1.09005 * 109.47085 * 119.99879 * 2 1 3 31 31 H 0.97000 * 119.99732 * 180.02562 * 8 7 5 32 32 H 1.00902 * 111.00312 * 85.02294 * 13 3 2 33 33 H 1.08997 * 109.67848 * 56.51796 * 16 14 13 34 34 H 1.09001 * 109.67609 * 295.97922 * 16 14 13 35 35 H 1.08998 * 109.16703 * 182.74478 * 17 16 14 36 36 H 1.08997 * 109.16578 * 301.98841 * 17 16 14 37 37 H 1.08996 * 109.97105 * 210.92345 * 20 18 17 38 38 H 1.08999 * 109.96520 * 332.19811 * 20 18 17 39 39 H 1.00893 * 111.00377 * 123.28098 * 21 20 18 40 40 H 1.08995 * 110.52257 * 141.96728 * 22 21 20 41 41 H 1.09009 * 110.51930 * 264.69908 * 22 21 20 42 42 H 1.08997 * 109.03059 * 185.69313 * 25 23 22 43 43 H 1.08998 * 109.02571 * 304.53240 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6124 1.9790 -0.8471 5 6 3.5429 1.4440 -0.1113 6 1 4.1416 1.8908 0.6686 7 6 4.1535 0.8748 -1.2086 8 7 3.4243 0.3310 -2.1585 9 14 6.0163 0.8773 -1.3469 10 1 6.6002 1.5458 -0.1564 11 1 6.5091 -0.5217 -1.4198 12 1 6.4207 1.6091 -2.5742 13 7 1.6409 2.1030 1.2499 14 6 1.4719 3.5486 1.0508 15 1 1.1125 3.7420 0.0401 16 6 2.8117 4.2614 1.2693 17 6 2.6239 5.7446 0.9641 18 6 1.6101 6.3781 1.9191 19 1 2.0214 6.5180 2.9189 20 6 1.1713 7.7186 1.2684 21 7 -0.0214 7.4282 0.4488 22 6 -0.3479 5.9886 0.5841 23 6 0.2896 5.5858 1.9258 24 1 -0.3384 5.9422 2.7423 25 6 0.4713 4.0962 2.0680 26 1 -0.3633 0.4335 0.9317 27 1 -0.3633 0.5901 -0.8413 28 1 -0.3633 -1.0237 -0.0905 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8539 -0.0697 -2.9304 32 1 2.3044 1.9146 1.9864 33 1 3.5639 3.8417 0.6014 34 1 3.1291 4.1370 2.3046 35 1 3.5812 6.2554 1.0683 36 1 2.2682 5.8571 -0.0600 37 1 0.9231 8.4445 2.0426 38 1 1.9714 8.1054 0.6373 39 1 -0.8014 8.0037 0.7287 40 1 -1.4277 5.8430 0.6152 41 1 0.0920 5.4185 -0.2343 42 1 0.8302 3.8762 3.0734 43 1 -0.4905 3.6051 1.9201 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400992610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:05 Heat of formation + Delta-G solvation = -37.961462 kcal Electronic energy + Delta-G solvation = -19982.345278 eV Core-core repulsion = 17253.084842 eV Total energy + Delta-G solvation = -2729.260437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.11505 -38.18912 -35.74212 -33.80050 -32.70184 -32.05828 -29.59868 -28.48057 -26.96997 -24.59360 -23.42084 -22.93711 -21.66088 -21.43005 -19.58512 -18.49493 -17.69009 -16.84443 -16.53299 -15.60729 -15.26001 -15.14841 -14.75039 -14.66408 -14.31647 -14.18105 -13.79618 -13.46559 -13.39670 -13.16623 -13.07514 -12.77108 -12.61319 -12.56131 -12.38254 -12.15212 -11.99365 -11.83850 -11.52494 -11.39897 -11.35362 -11.16684 -10.88375 -10.64779 -10.41875 -9.34068 -8.93438 -8.02818 -6.23199 1.35602 1.38826 1.47880 2.40339 3.16530 3.31429 3.55507 3.75798 3.77873 4.01484 4.21472 4.26337 4.40706 4.51748 4.58970 4.59772 4.63664 4.70757 4.77291 4.78952 4.88200 4.94792 4.99734 5.05891 5.09205 5.19705 5.22258 5.28079 5.30418 5.41245 5.44431 5.51704 5.58080 5.66410 5.68592 5.81211 5.91255 6.14986 6.24819 6.47057 6.58781 6.89057 7.08738 7.47422 8.93867 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022523 B = 0.006667 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.898813 B = 4198.922421 C = 4937.662035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 C 0.226 3.774 4 H -0.008 1.008 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.945 3.055 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.285 1.285 13 N -0.677 5.677 14 C 0.103 3.897 15 H 0.041 0.959 16 C -0.142 4.142 17 C -0.100 4.100 18 C -0.096 4.096 19 H 0.098 0.902 20 C 0.051 3.949 21 N -0.697 5.697 22 C 0.052 3.948 23 C -0.102 4.102 24 H 0.085 0.915 25 C -0.083 4.083 26 H 0.058 0.942 27 H 0.027 0.973 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.260 0.740 32 H 0.329 0.671 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.347 0.653 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.993 11.905 9.360 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.143 4.143 3 C 0.117 3.883 4 H 0.010 0.990 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.212 1.212 13 N -0.305 5.305 14 C -0.008 4.008 15 H 0.060 0.940 16 C -0.181 4.181 17 C -0.138 4.138 18 C -0.115 4.115 19 H 0.117 0.883 20 C -0.078 4.078 21 N -0.326 5.326 22 C -0.077 4.077 23 C -0.122 4.122 24 H 0.103 0.897 25 C -0.122 4.122 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.146 0.854 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.164 0.836 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.326 11.626 8.465 15.711 hybrid contribution 1.825 -0.141 0.054 1.832 sum -4.501 11.485 8.519 14.991 Atomic orbital electron populations 1.21536 0.96520 0.99401 1.00541 1.21381 0.94331 0.98668 0.99898 1.18924 0.91640 0.91240 0.86493 0.98958 1.22219 0.93875 1.36845 1.05426 0.92672 1.25648 1.01707 0.95116 0.95738 1.70024 1.36172 1.39167 1.09989 0.85714 0.81679 0.77666 0.77814 1.19319 1.20674 1.21156 1.60840 1.52196 1.08744 1.08707 1.21399 0.94296 0.87449 0.97612 0.94046 1.22216 0.98738 0.96235 1.00927 1.21406 0.98814 0.94773 0.98850 1.22351 0.95073 0.94903 0.99158 0.88330 1.22955 0.93323 0.96402 0.95167 1.61700 1.08217 1.05057 1.57629 1.22744 0.99897 0.88751 0.96268 1.21769 0.96749 0.95209 0.98519 0.89687 1.20762 0.98908 0.93729 0.98803 0.92283 0.95365 0.93853 0.92337 0.95288 0.93107 0.85419 0.93624 0.91956 0.92099 0.93767 0.91101 0.91573 0.83591 0.90349 0.93047 0.91716 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 9.73 71.98 0.70 -4.32 16 2 C -0.10 -5.05 5.45 30.59 0.17 -4.89 16 3 C 0.23 11.25 2.00 44.17 0.09 11.34 16 4 H -0.01 -0.43 7.34 -2.38 -0.02 -0.45 16 5 C -0.54 -29.18 7.26 25.60 0.19 -28.99 16 6 H 0.06 2.91 6.78 -2.91 -0.02 2.89 16 7 C 0.02 0.95 5.29 84.65 0.45 1.40 16 8 N -0.91 -52.94 11.30 21.45 0.24 -52.69 16 9 Si 0.94 43.83 29.54 68.60 2.03 45.86 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 13 N -0.68 -27.71 5.60 -473.04 -2.65 -30.36 16 14 C 0.10 3.70 2.31 44.96 0.10 3.81 16 15 H 0.04 1.73 6.01 -2.39 -0.01 1.72 16 16 C -0.14 -4.92 4.99 30.57 0.15 -4.77 16 17 C -0.10 -2.92 4.63 30.46 0.14 -2.78 16 18 C -0.10 -2.16 3.60 -9.65 -0.03 -2.20 16 19 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 20 C 0.05 1.03 6.88 86.97 0.60 1.63 16 21 N -0.70 -15.37 7.41 -503.04 -3.73 -19.10 16 22 C 0.05 1.29 6.52 86.35 0.56 1.85 16 23 C -0.10 -2.35 2.81 -10.88 -0.03 -2.38 16 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 25 C -0.08 -2.32 4.99 29.80 0.15 -2.17 16 26 H 0.06 2.25 7.88 -2.39 -0.02 2.23 16 27 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 3.22 5.96 -2.38 -0.01 3.20 16 30 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.33 13.34 8.03 -89.69 -0.72 12.62 16 33 H 0.04 1.93 6.04 -2.39 -0.01 1.91 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.04 1.47 7.15 -2.39 -0.02 1.45 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.46 7.74 -2.39 -0.02 1.45 16 39 H 0.35 5.92 8.91 -89.70 -0.80 5.12 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.05 1.61 6.14 -2.38 -0.01 1.59 16 42 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -58.67 317.48 -1.41 -60.08 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -0.53 Total: 28.68 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 3.23 Total: -32.46 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -6.13 Total: -102.15 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -58.67 -1.41 -60.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400992610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.114 kcal (2) G-P(sol) polarization free energy of solvation -58.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds