Wall clock time and date at job start Mon Mar 30 2020 04:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47393 * 2 1 4 4 H 1.08999 * 109.47177 * 56.51623 * 3 2 1 5 5 C 1.50697 * 109.47142 * 176.51614 * 3 2 1 6 6 H 1.08001 * 120.00071 * 114.58704 * 5 3 2 7 7 C 1.37876 * 120.00070 * 294.58486 * 5 3 2 8 8 N 1.31513 * 119.99948 * 347.33702 * 7 5 3 9 9 Si 1.86801 * 119.99867 * 167.32748 * 7 5 3 10 10 H 1.48495 * 109.47301 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47328 * 240.00088 * 9 7 5 12 12 H 1.48501 * 109.46957 * 120.00613 * 9 7 5 13 13 N 1.46898 * 109.47171 * 296.51764 * 3 2 1 14 14 C 1.46963 * 110.99620 * 300.50828 * 13 3 2 15 15 C 1.53055 * 109.35961 * 176.81002 * 14 13 3 16 16 N 1.46950 * 109.36468 * 58.40414 * 15 14 13 17 17 C 1.46904 * 111.00053 * 176.80684 * 16 15 14 18 18 C 1.53001 * 117.49945 * 124.66553 * 17 16 15 19 19 C 1.53003 * 117.49722 * 56.04328 * 17 16 15 20 20 C 1.46954 * 110.88218 * 300.67277 * 16 15 14 21 21 C 1.46958 * 111.00240 * 176.70877 * 13 3 2 22 22 H 1.09003 * 109.48362 * 63.21966 * 21 13 3 23 23 C 1.52992 * 109.48798 * 303.15318 * 21 13 3 24 24 H 1.09002 * 109.46462 * 65.05574 * 1 2 3 25 25 H 1.08996 * 109.47494 * 185.05670 * 1 2 3 26 26 H 1.09002 * 109.46957 * 305.05862 * 1 2 3 27 27 H 1.08999 * 109.47311 * 239.99649 * 2 1 3 28 28 H 1.09002 * 109.46505 * 120.00075 * 2 1 3 29 29 H 0.96997 * 120.00144 * 1.14162 * 8 7 5 30 30 H 1.08994 * 109.49043 * 296.77538 * 14 13 3 31 31 H 1.09000 * 109.49194 * 56.82267 * 14 13 3 32 32 H 1.09004 * 109.48609 * 178.37017 * 15 14 13 33 33 H 1.09004 * 109.49189 * 298.41056 * 15 14 13 34 34 H 1.08997 * 115.55213 * 270.37510 * 17 16 15 35 35 H 1.08998 * 117.49514 * 359.97438 * 18 17 16 36 36 H 1.08996 * 117.49703 * 145.02390 * 18 17 16 37 37 H 1.09000 * 117.49893 * 214.97848 * 19 17 16 38 38 H 1.09000 * 117.49887 * 0.02562 * 19 17 16 39 39 H 1.08993 * 109.48910 * 179.28806 * 20 16 15 40 40 H 1.08994 * 109.49017 * 299.35905 * 20 16 15 41 41 H 1.09004 * 109.47005 * 66.12052 * 23 21 13 42 42 H 1.09003 * 109.46965 * 186.12329 * 23 21 13 43 43 H 1.08996 * 109.47559 * 306.12143 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6267 1.9740 0.8571 5 6 3.5446 1.4433 0.0863 6 1 4.1327 1.8154 -0.7395 7 6 4.1703 0.9690 1.2197 8 7 3.4731 0.7505 2.3131 9 14 6.0084 0.6365 1.2019 10 1 6.5573 0.9612 -0.1392 11 1 6.2553 -0.7962 1.5046 12 1 6.6741 1.4806 2.2264 13 7 1.6204 2.1102 -1.2393 14 6 2.1505 1.4124 -2.4190 15 6 1.6268 2.0904 -3.6874 16 7 2.0325 3.5027 -3.6880 17 6 1.6128 4.1705 -4.9273 18 6 0.7547 5.4304 -4.7953 19 6 0.1262 4.1246 -5.2860 20 6 1.5025 4.2005 -2.5083 21 6 2.0261 3.5227 -1.2399 22 1 3.1139 3.5885 -1.2149 23 6 1.4436 4.2216 -0.0099 24 1 -0.3632 0.4334 -0.9319 25 1 -0.3634 -1.0236 0.0906 26 1 -0.3633 0.5903 0.8412 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.5159 0.9072 2.3174 30 1 3.2396 1.4544 -2.4075 31 1 1.8264 0.3718 -2.4022 32 1 2.0418 1.5924 -4.5637 33 1 0.5390 2.0241 -3.7125 34 1 2.3298 4.1332 -5.7475 35 1 0.5013 5.7634 -3.7889 36 1 0.9072 6.2222 -5.5286 37 1 -0.1349 4.0574 -6.3422 38 1 -0.5405 3.5992 -4.6022 39 1 1.8269 5.2409 -2.5250 40 1 0.4134 4.1586 -2.5199 41 1 1.8978 3.8096 0.8912 42 1 1.6523 5.2900 -0.0663 43 1 0.3656 4.0633 0.0215 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402306272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:44 Heat of formation + Delta-G solvation = 17.409131 kcal Electronic energy + Delta-G solvation = -20370.181165 eV Core-core repulsion = 17643.321777 eV Total energy + Delta-G solvation = -2726.859387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00791 -38.83808 -35.92945 -33.80362 -33.76867 -32.14846 -28.85065 -27.83465 -26.42457 -24.80816 -23.83882 -22.75660 -22.05942 -21.12717 -20.38908 -18.47118 -17.58847 -16.87087 -16.20190 -15.90256 -15.77164 -15.65171 -15.45324 -14.90778 -14.33630 -14.06270 -14.03276 -13.44401 -13.10738 -13.06204 -12.94672 -12.73474 -12.59066 -12.39679 -12.34253 -12.20771 -12.01899 -11.83392 -11.72267 -11.57322 -11.34184 -11.14624 -10.97587 -10.90781 -10.36616 -9.23103 -8.87859 -8.48271 -6.24891 1.48980 1.55605 1.72363 2.54775 2.77031 2.98528 3.20552 3.27362 3.78647 3.97670 3.99461 4.12637 4.17801 4.27015 4.43807 4.44339 4.47729 4.50661 4.59177 4.66892 4.69773 4.74682 4.75579 4.84888 4.92487 4.99859 5.10386 5.15526 5.20124 5.20630 5.23538 5.24440 5.33101 5.38993 5.54038 5.61588 5.98046 6.05495 6.13326 6.22478 6.56551 6.61404 6.67482 7.52315 8.80820 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025140 B = 0.006885 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.514329 B = 4065.819903 C = 4366.526339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.109 4.109 3 C 0.205 3.795 4 H 0.012 0.988 5 C -0.620 4.620 6 H 0.035 0.965 7 C -0.017 4.017 8 N -0.929 5.929 9 Si 1.103 2.897 10 H -0.282 1.282 11 H -0.279 1.279 12 H -0.284 1.284 13 N -0.518 5.518 14 C 0.063 3.937 15 C 0.073 3.927 16 N -0.524 5.524 17 C 0.008 3.992 18 C -0.180 4.180 19 C -0.203 4.203 20 C 0.077 3.923 21 C 0.089 3.911 22 H 0.016 0.984 23 C -0.128 4.128 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.045 0.955 28 H 0.031 0.969 29 H 0.261 0.739 30 H 0.015 0.985 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.040 0.960 41 H 0.031 0.969 42 H 0.072 0.928 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.507 6.250 -13.454 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.147 4.147 3 C 0.097 3.903 4 H 0.030 0.970 5 C -0.659 4.659 6 H 0.053 0.947 7 C -0.218 4.218 8 N -0.567 5.567 9 Si 0.928 3.072 10 H -0.208 1.208 11 H -0.205 1.205 12 H -0.210 1.210 13 N -0.242 5.242 14 C -0.066 4.066 15 C -0.055 4.055 16 N -0.247 5.247 17 C -0.101 4.101 18 C -0.217 4.217 19 C -0.242 4.242 20 C -0.051 4.051 21 C -0.020 4.020 22 H 0.034 0.966 23 C -0.186 4.186 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.149 0.851 35 H 0.113 0.887 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.091 0.909 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.246 5.732 -12.514 14.730 hybrid contribution -0.959 0.281 -0.380 1.069 sum -6.205 6.013 -12.894 15.521 Atomic orbital electron populations 1.21557 0.95263 1.00170 1.01248 1.21550 0.95496 0.98283 0.99398 1.19208 0.92101 0.90804 0.88169 0.97005 1.22688 0.94013 1.45467 1.03741 0.94682 1.26761 1.09482 0.93661 0.91869 1.70851 1.09246 1.48338 1.28218 0.83095 0.71380 0.77135 0.75633 1.20778 1.20507 1.20981 1.62626 1.57507 1.01509 1.02567 1.22006 0.96834 0.97715 0.90050 1.22076 0.98192 0.88017 0.97166 1.62100 1.58836 1.02408 1.01392 1.22974 0.92635 1.00516 0.93939 1.23384 1.02952 0.91878 1.03533 1.23353 0.96714 1.01397 1.02767 1.22181 0.97031 0.97453 0.88451 1.21441 0.96620 0.89182 0.94766 0.96555 1.21647 1.00615 0.99771 0.96603 0.92135 0.93069 0.94491 0.93663 0.95019 0.92889 0.96692 0.90999 0.89625 0.94040 0.85087 0.88716 0.86473 0.86842 0.90132 0.89679 0.94210 0.94992 0.90915 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 9.72 71.98 0.70 -4.03 16 2 C -0.11 -5.00 4.89 30.59 0.15 -4.85 16 3 C 0.20 10.01 1.04 44.17 0.05 10.06 16 4 H 0.01 0.66 5.42 -2.39 -0.01 0.65 16 5 C -0.62 -34.15 7.02 25.60 0.18 -33.97 16 6 H 0.03 2.02 5.85 -2.91 -0.02 2.01 16 7 C -0.02 -0.99 5.12 84.65 0.43 -0.55 16 8 N -0.93 -55.60 13.01 21.45 0.28 -55.32 16 9 Si 1.10 51.52 29.92 68.60 2.05 53.58 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 N -0.52 -21.56 4.01 -849.77 -3.41 -24.97 16 14 C 0.06 2.45 4.95 86.31 0.43 2.88 16 15 C 0.07 2.27 5.34 86.31 0.46 2.73 16 16 N -0.52 -15.91 4.94 -870.47 -4.30 -20.21 16 17 C 0.01 0.18 6.35 44.92 0.29 0.47 16 18 C -0.18 -3.44 9.40 30.60 0.29 -3.16 16 19 C -0.20 -3.98 9.46 30.60 0.29 -3.69 16 20 C 0.08 2.40 3.52 86.31 0.30 2.71 16 21 C 0.09 3.52 2.24 44.92 0.10 3.62 16 22 H 0.02 0.77 6.89 -2.39 -0.02 0.76 16 23 C -0.13 -4.77 8.66 71.98 0.62 -4.14 16 24 H 0.06 2.17 7.85 -2.39 -0.02 2.15 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.04 2.04 6.14 -2.39 -0.01 2.02 16 28 H 0.03 1.63 6.64 -2.39 -0.02 1.61 16 29 H 0.26 15.74 6.33 -92.71 -0.59 15.15 16 30 H 0.01 0.68 6.51 -2.39 -0.02 0.66 16 31 H 0.07 2.78 6.05 -2.39 -0.01 2.77 16 32 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.04 1.25 7.03 -2.38 -0.02 1.23 16 34 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.09 1.95 5.84 -2.39 -0.01 1.94 16 36 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.08 1.81 7.17 -2.39 -0.02 1.79 16 39 H 0.08 2.41 7.10 -2.39 -0.02 2.40 16 40 H 0.04 1.21 7.29 -2.39 -0.02 1.19 16 41 H 0.03 1.40 6.65 -2.39 -0.02 1.38 16 42 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -61.44 314.83 0.06 -61.37 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 1.15 Total: 17.48 kcal Atomic # 6 Polarization: -36.22 SS G_CDS: 4.29 Total: -31.93 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -7.43 Total: -100.50 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 2.05 Total: 53.58 kcal Total: -61.44 0.06 -61.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402306272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.783 kcal (2) G-P(sol) polarization free energy of solvation -61.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds