Wall clock time and date at job start Mon Mar 30 2020 04:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47452 * 2 1 4 4 H 1.09000 * 109.46971 * 304.99809 * 3 2 1 5 5 C 1.50695 * 109.47363 * 184.99538 * 3 2 1 6 6 H 1.08004 * 119.99993 * 239.99729 * 5 3 2 7 7 C 1.37881 * 120.00040 * 60.00310 * 5 3 2 8 8 N 1.31519 * 119.99526 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00222 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47328 * 59.99575 * 9 7 5 11 11 H 1.48493 * 109.47101 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46909 * 299.99454 * 9 7 5 13 13 N 1.46904 * 109.46932 * 64.99530 * 3 2 1 14 14 C 1.46955 * 111.00107 * 56.20502 * 13 3 2 15 15 C 1.53051 * 109.36464 * 183.18775 * 14 13 3 16 16 N 1.46958 * 109.36210 * 301.59472 * 15 14 13 17 17 C 1.46904 * 110.99685 * 183.18866 * 16 15 14 18 18 C 1.53001 * 117.51936 * 347.48773 * 17 16 15 19 19 C 1.52999 * 60.00190 * 107.47915 * 18 17 16 20 20 C 1.46955 * 110.87824 * 59.32328 * 16 15 14 21 21 C 1.46955 * 110.99947 * 180.02562 * 13 3 2 22 22 H 1.09008 * 109.48860 * 296.77983 * 21 13 3 23 23 C 1.53003 * 109.48866 * 56.84488 * 21 13 3 24 24 H 1.09000 * 109.47719 * 300.00596 * 1 2 3 25 25 H 1.09004 * 109.47148 * 60.00340 * 1 2 3 26 26 H 1.09000 * 109.47436 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47719 * 239.99404 * 2 1 3 28 28 H 1.09004 * 109.47148 * 119.99659 * 2 1 3 29 29 H 0.97004 * 119.99428 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.48952 * 303.15692 * 14 13 3 31 31 H 1.09004 * 109.48898 * 63.19387 * 14 13 3 32 32 H 1.08999 * 109.48572 * 181.63306 * 15 14 13 33 33 H 1.08999 * 109.48868 * 61.56430 * 15 14 13 34 34 H 1.09002 * 115.55029 * 201.78509 * 17 16 15 35 35 H 1.09001 * 117.49733 * 214.97346 * 18 17 16 36 36 H 1.08995 * 117.49577 * 359.97438 * 18 17 16 37 37 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 38 38 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 39 39 H 1.08999 * 109.48951 * 60.64838 * 20 16 15 40 40 H 1.09000 * 109.48952 * 180.70604 * 20 16 15 41 41 H 1.09003 * 109.46847 * 179.89298 * 23 21 13 42 42 H 1.09004 * 109.47015 * 299.88906 * 23 21 13 43 43 H 1.08995 * 109.47150 * 59.89761 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1237 6 1 4.1471 1.8888 0.6525 7 6 4.1433 0.8783 -1.2278 8 7 3.4062 0.3366 -2.1728 9 14 6.0050 0.8799 -1.3809 10 1 6.5966 0.1451 -0.2340 11 1 6.3979 0.2166 -2.6501 12 1 6.5005 2.2798 -1.3806 13 7 1.6513 2.0992 1.2552 14 6 2.1449 1.3478 2.4177 15 6 1.6528 2.0190 3.7021 16 7 2.1270 3.4096 3.7376 17 6 1.7382 4.0664 4.9928 18 6 0.7077 3.3560 5.8727 19 6 2.1756 3.4048 6.3013 20 6 1.6334 4.1610 2.5752 21 6 2.1249 3.4899 1.2905 22 1 3.2146 3.5037 1.2674 23 6 1.5786 4.2462 0.0778 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8294 -0.0619 -2.9494 30 1 1.7703 0.3250 2.3753 31 1 3.2348 1.3365 2.4073 32 1 2.0417 1.4801 4.5660 33 1 0.5631 2.0056 3.7250 34 1 1.7103 5.1557 4.9644 35 1 0.0018 3.9780 6.4231 36 1 0.3176 2.4013 5.5201 37 1 2.7515 2.4820 6.2306 38 1 2.4355 4.0589 7.1336 39 1 0.5435 4.1720 2.5853 40 1 2.0080 5.1838 2.6175 41 1 1.9285 5.2781 0.1054 42 1 1.9292 3.7679 -0.8368 43 1 0.4890 4.2313 0.1010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402306276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:47 Heat of formation + Delta-G solvation = 39.287146 kcal Electronic energy + Delta-G solvation = -20266.326948 eV Core-core repulsion = 17540.416262 eV Total energy + Delta-G solvation = -2725.910686 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.45432 -37.27310 -34.26248 -32.07694 -31.90894 -30.57328 -27.47437 -26.19002 -24.59584 -22.75812 -22.62668 -22.14772 -19.98067 -19.49927 -18.56996 -16.52631 -16.05919 -15.30092 -14.93725 -14.48471 -14.06199 -13.82740 -13.63351 -13.25126 -12.74170 -12.62350 -11.99386 -11.84455 -11.62817 -11.36429 -11.30103 -11.21204 -11.12588 -10.89169 -10.79784 -10.59628 -10.53577 -10.29606 -10.21021 -9.95646 -9.66920 -9.60592 -9.28748 -8.99601 -8.29812 -7.84267 -7.06158 -5.94859 -4.07840 3.30740 3.35588 3.39234 3.81104 4.22596 4.43140 4.91542 4.98912 5.00357 5.12172 5.28779 5.44720 5.63036 5.66694 5.68349 5.84896 5.94531 5.95709 6.06745 6.10982 6.16710 6.24548 6.29468 6.34684 6.43945 6.49981 6.60480 6.70040 6.84240 6.95748 7.02693 7.09051 7.21195 7.32575 7.38335 7.45762 7.68122 7.79093 8.03953 8.20520 8.38807 8.50629 9.02548 9.59464 11.03705 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023354 B = 0.006906 C = 0.006388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.640318 B = 4053.675524 C = 4382.253168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C 0.213 3.787 4 H 0.046 0.954 5 C -0.539 4.539 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.887 5.887 9 Si 0.885 3.115 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.531 5.531 14 C 0.060 3.940 15 C 0.055 3.945 16 N -0.506 5.506 17 C 0.027 3.973 18 C -0.223 4.223 19 C -0.175 4.175 20 C 0.066 3.934 21 C 0.091 3.909 22 H 0.054 0.946 23 C -0.138 4.138 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.024 0.976 27 H 0.093 0.907 28 H 0.033 0.967 29 H 0.261 0.739 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.039 0.961 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.036 0.964 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 5.236 10.673 12.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C 0.107 3.893 4 H 0.063 0.937 5 C -0.578 4.578 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.526 5.526 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.256 5.256 14 C -0.069 4.069 15 C -0.072 4.072 16 N -0.228 5.228 17 C -0.083 4.083 18 C -0.263 4.263 19 C -0.213 4.213 20 C -0.061 4.061 21 C -0.019 4.019 22 H 0.072 0.928 23 C -0.196 4.196 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.111 0.889 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.132 0.868 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.054 0.946 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.763 5.139 10.447 12.579 hybrid contribution 1.145 -0.080 -0.039 1.148 sum -3.619 5.058 10.408 12.125 Atomic orbital electron populations 1.21709 0.98916 0.98343 1.00539 1.21682 0.92187 0.99504 1.02040 1.19316 0.93006 0.90816 0.86208 0.93671 1.21712 0.92926 1.37816 1.05364 0.92591 1.24888 0.97624 0.95100 0.95744 1.69865 1.34774 1.38436 1.09477 0.86769 0.86467 0.78213 0.77222 1.20422 1.21351 1.20386 1.62664 1.58205 1.00864 1.03841 1.22005 0.98866 0.97103 0.88885 1.22355 0.97715 0.88388 0.98771 1.62012 1.57948 1.02450 1.00376 1.22652 1.00946 0.97084 0.87621 1.23525 0.92773 1.03957 1.06011 1.23024 0.97033 1.03357 0.97871 1.22260 0.97539 0.96467 0.89869 1.21387 0.98511 0.89835 0.92149 0.92772 1.21759 1.00331 0.98356 0.99182 0.93560 0.94177 0.95664 0.88920 0.94841 0.92932 0.90653 0.93722 0.91521 0.94310 0.86849 0.89308 0.88245 0.88663 0.88911 0.94613 0.91470 0.93800 0.90787 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.80 37.15 0.36 -2.41 16 2 C -0.12 -2.69 4.93 -26.74 -0.13 -2.83 16 3 C 0.21 5.08 1.35 -68.87 -0.09 4.98 16 4 H 0.05 1.19 6.25 -51.93 -0.32 0.87 16 5 C -0.54 -14.16 7.12 -34.44 -0.25 -14.41 16 6 H 0.06 1.52 5.80 -52.48 -0.30 1.21 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -24.61 11.29 55.43 0.63 -23.99 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.53 -10.96 4.01 -219.95 -0.88 -11.84 16 14 C 0.06 1.18 4.92 -3.77 -0.02 1.16 16 15 C 0.06 0.91 4.29 -3.77 -0.02 0.89 16 16 N -0.51 -8.13 4.93 -226.49 -1.12 -9.25 16 17 C 0.03 0.35 6.11 -67.71 -0.41 -0.06 16 18 C -0.22 -2.61 9.57 -26.73 -0.26 -2.87 16 19 C -0.17 -2.04 9.95 -26.73 -0.27 -2.30 16 20 C 0.07 1.09 4.87 -3.77 -0.02 1.07 16 21 C 0.09 1.75 2.19 -67.66 -0.15 1.60 16 22 H 0.05 1.20 6.58 -51.92 -0.34 0.86 16 23 C -0.14 -2.52 8.86 37.16 0.33 -2.19 16 24 H 0.05 0.90 7.75 -51.93 -0.40 0.49 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 28 H 0.03 0.76 6.00 -51.93 -0.31 0.45 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.08 1.48 5.95 -51.93 -0.31 1.17 16 31 H 0.04 0.98 6.81 -51.93 -0.35 0.63 16 32 H 0.07 1.01 6.62 -51.93 -0.34 0.66 16 33 H 0.04 0.63 6.96 -51.93 -0.36 0.27 16 34 H 0.11 1.36 8.07 -51.93 -0.42 0.94 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 1.24 5.94 -51.93 -0.31 0.93 16 37 H 0.09 1.18 7.26 -51.93 -0.38 0.80 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.55 6.36 -51.93 -0.33 1.22 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 316.10 15.07 4.76 4.76 Total: -1.00 -26.68 316.10 -9.95 -36.63 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.31 Total: 3.12 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -1.01 Total: -15.61 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -1.37 Total: -45.07 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -26.68 -9.95 -36.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402306276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.916 kcal (2) G-P(sol) polarization free energy of solvation -26.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds