Wall clock time and date at job start Mon Mar 30 2020 04:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47452 * 2 1 4 4 H 1.09000 * 109.46971 * 304.99809 * 3 2 1 5 5 C 1.50695 * 109.47363 * 184.99538 * 3 2 1 6 6 H 1.08004 * 119.99993 * 239.99729 * 5 3 2 7 7 C 1.37881 * 120.00040 * 60.00310 * 5 3 2 8 8 N 1.31519 * 119.99526 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00222 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47328 * 59.99575 * 9 7 5 11 11 H 1.48493 * 109.47101 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46909 * 299.99454 * 9 7 5 13 13 N 1.46904 * 109.46932 * 64.99530 * 3 2 1 14 14 C 1.46955 * 111.00107 * 56.20502 * 13 3 2 15 15 C 1.53051 * 109.36464 * 183.18775 * 14 13 3 16 16 N 1.46958 * 109.36210 * 301.59472 * 15 14 13 17 17 C 1.46904 * 110.99685 * 183.18866 * 16 15 14 18 18 C 1.53001 * 117.51936 * 347.48773 * 17 16 15 19 19 C 1.52999 * 60.00190 * 107.47915 * 18 17 16 20 20 C 1.46955 * 110.87824 * 59.32328 * 16 15 14 21 21 C 1.46955 * 110.99947 * 180.02562 * 13 3 2 22 22 H 1.09008 * 109.48860 * 296.77983 * 21 13 3 23 23 C 1.53003 * 109.48866 * 56.84488 * 21 13 3 24 24 H 1.09000 * 109.47719 * 300.00596 * 1 2 3 25 25 H 1.09004 * 109.47148 * 60.00340 * 1 2 3 26 26 H 1.09000 * 109.47436 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47719 * 239.99404 * 2 1 3 28 28 H 1.09004 * 109.47148 * 119.99659 * 2 1 3 29 29 H 0.97004 * 119.99428 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.48952 * 303.15692 * 14 13 3 31 31 H 1.09004 * 109.48898 * 63.19387 * 14 13 3 32 32 H 1.08999 * 109.48572 * 181.63306 * 15 14 13 33 33 H 1.08999 * 109.48868 * 61.56430 * 15 14 13 34 34 H 1.09002 * 115.55029 * 201.78509 * 17 16 15 35 35 H 1.09001 * 117.49733 * 214.97346 * 18 17 16 36 36 H 1.08995 * 117.49577 * 359.97438 * 18 17 16 37 37 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 38 38 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 39 39 H 1.08999 * 109.48951 * 60.64838 * 20 16 15 40 40 H 1.09000 * 109.48952 * 180.70604 * 20 16 15 41 41 H 1.09003 * 109.46847 * 179.89298 * 23 21 13 42 42 H 1.09004 * 109.47015 * 299.88906 * 23 21 13 43 43 H 1.08995 * 109.47150 * 59.89761 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1237 6 1 4.1471 1.8888 0.6525 7 6 4.1433 0.8783 -1.2278 8 7 3.4062 0.3366 -2.1728 9 14 6.0050 0.8799 -1.3809 10 1 6.5966 0.1451 -0.2340 11 1 6.3979 0.2166 -2.6501 12 1 6.5005 2.2798 -1.3806 13 7 1.6513 2.0992 1.2552 14 6 2.1449 1.3478 2.4177 15 6 1.6528 2.0190 3.7021 16 7 2.1270 3.4096 3.7376 17 6 1.7382 4.0664 4.9928 18 6 0.7077 3.3560 5.8727 19 6 2.1756 3.4048 6.3013 20 6 1.6334 4.1610 2.5752 21 6 2.1249 3.4899 1.2905 22 1 3.2146 3.5037 1.2674 23 6 1.5786 4.2462 0.0778 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8294 -0.0619 -2.9494 30 1 1.7703 0.3250 2.3753 31 1 3.2348 1.3365 2.4073 32 1 2.0417 1.4801 4.5660 33 1 0.5631 2.0056 3.7250 34 1 1.7103 5.1557 4.9644 35 1 0.0018 3.9780 6.4231 36 1 0.3176 2.4013 5.5201 37 1 2.7515 2.4820 6.2306 38 1 2.4355 4.0589 7.1336 39 1 0.5435 4.1720 2.5853 40 1 2.0080 5.1838 2.6175 41 1 1.9285 5.2781 0.1054 42 1 1.9292 3.7679 -0.8368 43 1 0.4890 4.2313 0.1010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402306276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:47 Heat of formation + Delta-G solvation = 23.095945 kcal Electronic energy + Delta-G solvation = -20267.029051 eV Core-core repulsion = 17540.416262 eV Total energy + Delta-G solvation = -2726.612789 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.82666 -38.66231 -35.83709 -33.86823 -33.44173 -32.19610 -29.15141 -27.84906 -26.19651 -24.52028 -23.89876 -23.16228 -21.52417 -20.89731 -20.26844 -18.03779 -17.76842 -16.78771 -16.39517 -16.16172 -15.57764 -15.31711 -15.08532 -14.85359 -14.41454 -14.00363 -13.59694 -13.39661 -13.09140 -13.01486 -12.80745 -12.75051 -12.67930 -12.50246 -12.35178 -12.15427 -12.01058 -11.69971 -11.61330 -11.54233 -11.43268 -11.13555 -11.06074 -10.79585 -10.34777 -9.04035 -8.86196 -7.99765 -6.21170 1.36569 1.37848 1.44781 2.41145 2.75617 3.17158 3.17937 3.40945 3.87705 4.06476 4.08636 4.17634 4.24039 4.37129 4.47947 4.54621 4.61371 4.64212 4.75227 4.79888 4.83469 4.87287 4.89504 4.91982 4.96768 5.11722 5.15054 5.22235 5.28496 5.29684 5.38267 5.42029 5.47629 5.53993 5.66659 5.83986 6.07653 6.12901 6.22691 6.29545 6.46111 6.72486 7.00231 7.48718 8.93970 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023354 B = 0.006906 C = 0.006388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.640318 B = 4053.675524 C = 4382.253168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.112 4.112 3 C 0.221 3.779 4 H 0.018 0.982 5 C -0.543 4.543 6 H 0.042 0.958 7 C 0.025 3.975 8 N -0.909 5.909 9 Si 0.939 3.061 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.524 5.524 14 C 0.063 3.937 15 C 0.069 3.931 16 N -0.523 5.523 17 C 0.009 3.991 18 C -0.213 4.213 19 C -0.169 4.169 20 C 0.077 3.923 21 C 0.088 3.912 22 H 0.019 0.981 23 C -0.130 4.130 24 H 0.055 0.945 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.031 0.969 29 H 0.260 0.740 30 H 0.072 0.928 31 H 0.012 0.988 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.041 0.959 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.530 6.233 12.633 15.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.150 4.150 3 C 0.113 3.887 4 H 0.036 0.964 5 C -0.582 4.582 6 H 0.060 0.940 7 C -0.175 4.175 8 N -0.549 5.549 9 Si 0.765 3.235 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.249 5.249 14 C -0.065 4.065 15 C -0.059 4.059 16 N -0.246 5.246 17 C -0.100 4.100 18 C -0.252 4.252 19 C -0.206 4.206 20 C -0.050 4.050 21 C -0.021 4.021 22 H 0.037 0.963 23 C -0.188 4.188 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.031 0.969 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.132 0.868 39 H 0.059 0.941 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.513 6.144 12.427 14.918 hybrid contribution 1.389 -0.370 -0.614 1.563 sum -4.124 5.774 11.813 13.780 Atomic orbital electron populations 1.21555 0.96240 0.99733 1.00640 1.21534 0.94530 0.98570 1.00378 1.19065 0.91434 0.91159 0.87000 0.96423 1.21892 0.94337 1.37184 1.04834 0.94026 1.25508 1.01169 0.95137 0.95694 1.69981 1.35996 1.39112 1.09789 0.85921 0.82284 0.78066 0.77190 1.20371 1.20764 1.20279 1.62644 1.57777 1.01562 1.02889 1.21984 0.96867 0.97462 0.90216 1.22179 0.97836 0.88876 0.97030 1.61971 1.58651 1.02282 1.01650 1.22779 1.02786 0.97834 0.86575 1.23539 0.93038 1.03502 1.05076 1.23093 0.96958 1.03059 0.97519 1.22111 0.97659 0.96917 0.88352 1.21453 0.96541 0.89455 0.94675 0.96274 1.21666 1.00862 0.99283 0.96981 0.92604 0.94776 0.93636 0.91967 0.94994 0.93027 0.91012 0.96918 0.90167 0.93719 0.85335 0.87371 0.89038 0.89682 0.86801 0.94072 0.89538 0.91190 0.94336 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.80 71.98 0.71 -4.23 16 2 C -0.11 -5.30 4.93 30.59 0.15 -5.15 16 3 C 0.22 10.86 1.35 44.17 0.06 10.92 16 4 H 0.02 0.98 6.25 -2.39 -0.01 0.97 16 5 C -0.54 -29.57 7.12 25.60 0.18 -29.39 16 6 H 0.04 2.35 5.80 -2.91 -0.02 2.33 16 7 C 0.02 1.36 5.29 84.65 0.45 1.81 16 8 N -0.91 -51.87 11.29 21.45 0.24 -51.63 16 9 Si 0.94 44.37 29.54 68.60 2.03 46.39 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 N -0.52 -21.86 4.01 -849.78 -3.40 -25.26 16 14 C 0.06 2.50 4.92 86.31 0.43 2.92 16 15 C 0.07 2.15 4.29 86.31 0.37 2.52 16 16 N -0.52 -15.87 4.93 -870.47 -4.29 -20.16 16 17 C 0.01 0.22 6.11 44.92 0.27 0.49 16 18 C -0.21 -4.23 9.57 30.59 0.29 -3.94 16 19 C -0.17 -3.40 9.95 30.60 0.30 -3.09 16 20 C 0.08 2.39 4.87 86.31 0.42 2.81 16 21 C 0.09 3.41 2.19 44.92 0.10 3.51 16 22 H 0.02 0.88 6.58 -2.38 -0.02 0.86 16 23 C -0.13 -4.71 8.86 71.98 0.64 -4.07 16 24 H 0.05 2.09 7.75 -2.39 -0.02 2.07 16 25 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.06 3.35 5.95 -2.39 -0.01 3.34 16 28 H 0.03 1.48 6.00 -2.38 -0.01 1.47 16 29 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 30 H 0.07 2.83 5.95 -2.39 -0.01 2.81 16 31 H 0.01 0.57 6.81 -2.39 -0.02 0.56 16 32 H 0.08 2.29 6.62 -2.39 -0.02 2.27 16 33 H 0.04 1.36 6.96 -2.39 -0.02 1.34 16 34 H 0.13 2.60 8.07 -2.39 -0.02 2.58 16 35 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 1.99 5.94 -2.39 -0.01 1.98 16 37 H 0.08 1.90 7.26 -2.39 -0.02 1.89 16 38 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 2.34 8.13 -2.39 -0.02 2.32 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.04 1.65 6.36 -2.39 -0.02 1.64 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -58.62 316.10 -0.09 -58.71 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.97 Total: 16.84 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 4.37 Total: -24.89 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -7.45 Total: -97.05 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -58.62 -0.09 -58.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402306276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.806 kcal (2) G-P(sol) polarization free energy of solvation -58.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds