Wall clock time and date at job start Mon Mar 30 2020 04:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47137 * 2 1 4 4 H 1.09001 * 109.47174 * 183.19509 * 3 2 1 5 5 C 1.50699 * 109.47043 * 303.18622 * 3 2 1 6 6 H 1.08007 * 119.99470 * 115.29155 * 5 3 2 7 7 C 1.37872 * 120.00354 * 295.29374 * 5 3 2 8 8 N 1.31514 * 120.00220 * 353.63460 * 7 5 3 9 9 Si 1.86806 * 119.99959 * 173.63280 * 7 5 3 10 10 H 1.48501 * 109.46793 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.46953 * 60.00501 * 9 7 5 12 12 H 1.48496 * 109.47067 * 300.00105 * 9 7 5 13 13 N 1.46898 * 109.47254 * 63.18895 * 3 2 1 14 14 C 1.48531 * 110.99701 * 64.81569 * 13 3 2 15 15 C 1.54326 * 104.66829 * 159.19591 * 14 13 3 16 16 H 1.08997 * 111.82178 * 213.65066 * 15 14 13 17 17 C 1.54159 * 108.86615 * 89.63303 * 15 14 13 18 18 C 1.54851 * 104.32478 * 271.10596 * 17 15 14 19 19 C 1.54846 * 102.73556 * 321.82225 * 18 17 15 20 20 C 1.54166 * 104.32085 * 38.18367 * 19 18 17 21 21 C 1.53005 * 111.79509 * 213.84340 * 20 19 18 22 22 N 1.46900 * 109.46913 * 299.22714 * 21 20 19 23 23 C 1.48524 * 111.00017 * 180.22329 * 13 3 2 24 24 H 1.09000 * 109.47295 * 185.57574 * 1 2 3 25 25 H 1.09006 * 109.46880 * 305.57110 * 1 2 3 26 26 H 1.08999 * 109.47537 * 65.57346 * 1 2 3 27 27 H 1.09004 * 109.47040 * 240.00207 * 2 1 3 28 28 H 1.08997 * 109.47185 * 120.00142 * 2 1 3 29 29 H 0.96998 * 119.99503 * 355.20566 * 8 7 5 30 30 H 1.08995 * 110.40094 * 277.99505 * 14 13 3 31 31 H 1.09006 * 110.40144 * 40.40276 * 14 13 3 32 32 H 1.09006 * 110.46226 * 29.81099 * 17 15 14 33 33 H 1.08996 * 110.46791 * 152.26683 * 17 15 14 34 34 H 1.08997 * 110.75942 * 80.13319 * 18 17 15 35 35 H 1.09000 * 110.75891 * 203.32696 * 18 17 15 36 36 H 1.08996 * 110.46356 * 156.89219 * 19 18 17 37 37 H 1.08999 * 110.46093 * 279.34812 * 19 18 17 38 38 H 1.08992 * 109.46871 * 59.22623 * 21 20 19 39 39 H 1.09004 * 109.46599 * 179.22726 * 21 20 19 40 40 H 1.00896 * 110.99628 * 179.97438 * 22 21 20 41 41 H 1.00899 * 110.99811 * 303.95401 * 22 21 20 42 42 H 1.09004 * 110.40269 * 319.60774 * 23 13 3 43 43 H 1.09005 * 110.39962 * 82.01440 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1285 1.4430 -0.0573 5 6 1.4742 2.1753 -1.1891 6 1 0.7985 3.0048 -1.0407 7 6 1.8190 1.7870 -2.4662 8 7 2.7358 0.8616 -2.6472 9 14 0.9840 2.5753 -3.9397 10 1 1.5290 1.9882 -5.1901 11 1 1.2384 4.0383 -3.9286 12 1 -0.4783 2.3265 -3.8716 13 7 1.6143 2.1124 1.2361 14 6 2.2468 1.4869 2.4255 15 6 2.1606 2.5650 3.5264 16 1 3.0195 2.5293 4.1965 17 6 0.8320 2.3934 4.2891 18 6 -0.1788 3.2591 3.4974 19 6 0.6682 4.4915 3.0958 20 6 2.0557 3.9083 2.7622 21 6 3.1829 4.8705 3.1425 22 7 3.0326 6.1228 2.3895 23 6 2.0878 3.5198 1.2690 24 1 -0.3634 -1.0228 0.0998 25 1 -0.3633 0.5978 0.8360 26 1 -0.3634 0.4249 -0.9356 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.2187 0.5021 -1.8867 30 1 1.6963 0.5947 2.7235 31 1 3.2878 1.2398 2.2165 32 1 0.5229 1.3481 4.2858 33 1 0.9297 2.7577 5.3117 34 1 -0.5325 2.7287 2.6133 35 1 -1.0160 3.5520 4.1310 36 1 0.2396 4.9797 2.2206 37 1 0.7376 5.1934 3.9269 38 1 3.1358 5.0810 4.2109 39 1 4.1445 4.4161 2.9037 40 1 3.7654 6.7756 2.6236 41 1 3.0082 5.9468 1.3963 42 1 3.1040 3.5880 0.8805 43 1 1.4172 4.1598 0.6955 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402931778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:34 Heat of formation + Delta-G solvation = -13.888733 kcal Electronic energy + Delta-G solvation = -20536.033761 eV Core-core repulsion = 17807.817196 eV Total energy + Delta-G solvation = -2728.216565 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.03556 -36.13700 -34.14244 -32.85864 -30.97890 -29.74524 -28.53546 -25.84443 -25.10996 -23.86467 -22.93717 -21.48299 -19.88979 -19.27094 -18.14219 -16.81234 -15.65860 -15.52626 -14.73732 -14.33965 -13.99800 -13.71423 -13.49757 -13.39557 -13.10388 -12.83890 -12.49603 -12.26141 -11.74531 -11.49323 -11.10014 -10.97354 -10.78351 -10.56593 -10.54091 -10.35630 -10.22579 -10.17358 -10.09332 -10.07576 -10.02591 -9.78272 -9.49212 -8.56705 -8.40466 -8.36237 -7.35421 -6.30761 -4.00810 3.44581 3.46859 3.64855 4.52062 4.56407 4.77273 4.88902 5.04034 5.21002 5.39919 5.41060 5.52258 5.62816 5.74219 5.84012 5.86040 5.93495 6.02754 6.09494 6.24722 6.26985 6.34073 6.36626 6.41268 6.43694 6.53488 6.54861 6.62374 6.71541 6.74525 6.87635 6.94272 7.06139 7.22560 7.23687 7.35546 7.53148 7.53885 7.80162 8.05963 8.35848 8.61843 8.90118 9.68002 11.05005 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.007887 C = 0.006825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.994425 B = 3549.290189 C = 4101.778173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.110 4.110 3 C 0.195 3.805 4 H -0.013 1.013 5 C -0.574 4.574 6 H 0.054 0.946 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 1.062 2.938 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.287 1.287 13 N -0.486 5.486 14 C 0.035 3.965 15 C -0.090 4.090 16 H 0.070 0.930 17 C -0.108 4.108 18 C -0.122 4.122 19 C -0.086 4.086 20 C -0.067 4.067 21 C 0.083 3.917 22 N -0.848 5.848 23 C 0.068 3.932 24 H 0.016 0.984 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.019 0.981 29 H 0.268 0.732 30 H 0.071 0.929 31 H 0.026 0.974 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.021 0.979 40 H 0.335 0.665 41 H 0.345 0.655 42 H 0.026 0.974 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.858 5.144 11.926 13.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.149 4.149 3 C 0.088 3.912 4 H 0.004 0.996 5 C -0.613 4.613 6 H 0.073 0.927 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.891 3.109 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.214 1.214 13 N -0.210 5.210 14 C -0.093 4.093 15 C -0.109 4.109 16 H 0.088 0.912 17 C -0.146 4.146 18 C -0.159 4.159 19 C -0.124 4.124 20 C -0.068 4.068 21 C -0.048 4.048 22 N -0.377 5.377 23 C -0.060 4.060 24 H 0.035 0.965 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.039 0.961 40 H 0.146 0.854 41 H 0.158 0.842 42 H 0.044 0.956 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.237 5.104 10.632 12.004 hybrid contribution 2.132 -0.277 1.159 2.443 sum -0.105 4.827 11.791 12.741 Atomic orbital electron populations 1.21423 0.96257 0.97500 1.02403 1.21539 0.96538 0.98106 0.98708 1.19560 0.92589 0.91429 0.87644 0.99582 1.21784 1.30404 1.18021 0.91072 0.92727 1.25670 0.96389 0.95931 1.00342 1.70793 1.22367 1.26968 1.34977 0.83639 0.75853 0.75490 0.75913 1.21008 1.21620 1.21395 1.65342 1.52634 1.00840 1.02150 1.23157 0.96795 0.97004 0.92372 1.22480 0.97537 0.94620 0.96288 0.91197 1.22283 0.94827 0.99937 0.97506 1.22465 0.96648 0.96586 1.00206 1.22106 0.93385 0.96377 1.00508 1.21964 0.95207 0.93344 0.96263 1.21702 0.95785 0.89527 0.97823 1.58695 1.53840 1.13222 1.11955 1.22846 0.98131 0.92336 0.92726 0.96474 0.93009 0.92278 0.92015 0.96180 0.92039 0.91031 0.95586 0.91992 0.92875 0.89843 0.93025 0.91728 0.92655 0.91461 0.96093 0.85388 0.84196 0.95603 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.44 37.16 0.35 -2.25 16 2 C -0.11 -2.58 5.29 -26.73 -0.14 -2.72 16 3 C 0.19 4.75 1.16 -68.87 -0.08 4.67 16 4 H -0.01 -0.36 7.35 -51.93 -0.38 -0.74 16 5 C -0.57 -15.34 6.65 -34.44 -0.23 -15.57 16 6 H 0.05 1.49 7.11 -52.48 -0.37 1.12 16 7 C 0.02 0.57 5.26 -17.82 -0.09 0.47 16 8 N -0.91 -26.85 12.89 55.43 0.71 -26.14 16 9 Si 1.06 24.94 29.91 -169.99 -5.08 19.85 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 13 N -0.49 -9.98 3.69 -223.53 -0.83 -10.81 16 14 C 0.04 0.63 4.97 -2.23 -0.01 0.62 16 15 C -0.09 -1.34 3.59 -88.32 -0.32 -1.66 16 16 H 0.07 0.96 7.91 -51.93 -0.41 0.55 16 17 C -0.11 -1.48 6.27 -25.15 -0.16 -1.64 16 18 C -0.12 -1.77 6.52 -24.78 -0.16 -1.94 16 19 C -0.09 -1.28 5.55 -25.15 -0.14 -1.42 16 20 C -0.07 -1.02 0.78 -152.20 -0.12 -1.14 16 21 C 0.08 1.11 5.74 -3.82 -0.02 1.09 16 22 N -0.85 -10.69 9.33 -10.37 -0.10 -10.79 16 23 C 0.07 1.30 3.81 -2.23 -0.01 1.29 16 24 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 1.10 7.54 -51.93 -0.39 0.71 16 26 H 0.06 1.41 7.34 -51.93 -0.38 1.03 16 27 H 0.06 1.59 6.29 -51.93 -0.33 1.26 16 28 H 0.02 0.43 6.92 -51.93 -0.36 0.07 16 29 H 0.27 7.90 6.04 -40.82 -0.25 7.66 16 30 H 0.07 1.27 6.91 -51.93 -0.36 0.91 16 31 H 0.03 0.49 7.90 -51.93 -0.41 0.08 16 32 H 0.06 0.85 7.45 -51.93 -0.39 0.47 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.42 7.71 -51.93 -0.40 1.02 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 1.04 7.45 -51.93 -0.39 0.65 16 37 H 0.05 0.77 7.96 -51.93 -0.41 0.36 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.33 3.45 9.08 -39.29 -0.36 3.10 16 41 H 0.34 4.65 8.14 -39.29 -0.32 4.33 16 42 H 0.03 0.54 7.81 -51.93 -0.41 0.13 16 43 H 0.08 1.63 6.79 -51.93 -0.35 1.28 16 LS Contribution 316.58 15.07 4.77 4.77 Total: -1.00 -28.06 316.58 -9.22 -37.28 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.57 Total: 6.01 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -1.13 Total: -20.18 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.21 Total: -47.73 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.85 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.06 -9.22 -37.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402931778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.390 kcal (2) G-P(sol) polarization free energy of solvation -28.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds