Wall clock time and date at job start Mon Mar 30 2020 04:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47137 * 2 1 4 4 H 1.09001 * 109.47174 * 183.19509 * 3 2 1 5 5 C 1.50699 * 109.47043 * 303.18622 * 3 2 1 6 6 H 1.08007 * 119.99470 * 115.29155 * 5 3 2 7 7 C 1.37872 * 120.00354 * 295.29374 * 5 3 2 8 8 N 1.31514 * 120.00220 * 353.63460 * 7 5 3 9 9 Si 1.86806 * 119.99959 * 173.63280 * 7 5 3 10 10 H 1.48501 * 109.46793 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.46953 * 60.00501 * 9 7 5 12 12 H 1.48496 * 109.47067 * 300.00105 * 9 7 5 13 13 N 1.46898 * 109.47254 * 63.18895 * 3 2 1 14 14 C 1.48531 * 110.99701 * 64.81569 * 13 3 2 15 15 C 1.54326 * 104.66829 * 159.19591 * 14 13 3 16 16 H 1.08997 * 111.82178 * 213.65066 * 15 14 13 17 17 C 1.54159 * 108.86615 * 89.63303 * 15 14 13 18 18 C 1.54851 * 104.32478 * 271.10596 * 17 15 14 19 19 C 1.54846 * 102.73556 * 321.82225 * 18 17 15 20 20 C 1.54166 * 104.32085 * 38.18367 * 19 18 17 21 21 C 1.53005 * 111.79509 * 213.84340 * 20 19 18 22 22 N 1.46900 * 109.46913 * 299.22714 * 21 20 19 23 23 C 1.48524 * 111.00017 * 180.22329 * 13 3 2 24 24 H 1.09000 * 109.47295 * 185.57574 * 1 2 3 25 25 H 1.09006 * 109.46880 * 305.57110 * 1 2 3 26 26 H 1.08999 * 109.47537 * 65.57346 * 1 2 3 27 27 H 1.09004 * 109.47040 * 240.00207 * 2 1 3 28 28 H 1.08997 * 109.47185 * 120.00142 * 2 1 3 29 29 H 0.96998 * 119.99503 * 355.20566 * 8 7 5 30 30 H 1.08995 * 110.40094 * 277.99505 * 14 13 3 31 31 H 1.09006 * 110.40144 * 40.40276 * 14 13 3 32 32 H 1.09006 * 110.46226 * 29.81099 * 17 15 14 33 33 H 1.08996 * 110.46791 * 152.26683 * 17 15 14 34 34 H 1.08997 * 110.75942 * 80.13319 * 18 17 15 35 35 H 1.09000 * 110.75891 * 203.32696 * 18 17 15 36 36 H 1.08996 * 110.46356 * 156.89219 * 19 18 17 37 37 H 1.08999 * 110.46093 * 279.34812 * 19 18 17 38 38 H 1.08992 * 109.46871 * 59.22623 * 21 20 19 39 39 H 1.09004 * 109.46599 * 179.22726 * 21 20 19 40 40 H 1.00896 * 110.99628 * 179.97438 * 22 21 20 41 41 H 1.00899 * 110.99811 * 303.95401 * 22 21 20 42 42 H 1.09004 * 110.40269 * 319.60774 * 23 13 3 43 43 H 1.09005 * 110.39962 * 82.01440 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1285 1.4430 -0.0573 5 6 1.4742 2.1753 -1.1891 6 1 0.7985 3.0048 -1.0407 7 6 1.8190 1.7870 -2.4662 8 7 2.7358 0.8616 -2.6472 9 14 0.9840 2.5753 -3.9397 10 1 1.5290 1.9882 -5.1901 11 1 1.2384 4.0383 -3.9286 12 1 -0.4783 2.3265 -3.8716 13 7 1.6143 2.1124 1.2361 14 6 2.2468 1.4869 2.4255 15 6 2.1606 2.5650 3.5264 16 1 3.0195 2.5293 4.1965 17 6 0.8320 2.3934 4.2891 18 6 -0.1788 3.2591 3.4974 19 6 0.6682 4.4915 3.0958 20 6 2.0557 3.9083 2.7622 21 6 3.1829 4.8705 3.1425 22 7 3.0326 6.1228 2.3895 23 6 2.0878 3.5198 1.2690 24 1 -0.3634 -1.0228 0.0998 25 1 -0.3633 0.5978 0.8360 26 1 -0.3634 0.4249 -0.9356 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.2187 0.5021 -1.8867 30 1 1.6963 0.5947 2.7235 31 1 3.2878 1.2398 2.2165 32 1 0.5229 1.3481 4.2858 33 1 0.9297 2.7577 5.3117 34 1 -0.5325 2.7287 2.6133 35 1 -1.0160 3.5520 4.1310 36 1 0.2396 4.9797 2.2206 37 1 0.7376 5.1934 3.9269 38 1 3.1358 5.0810 4.2109 39 1 4.1445 4.4161 2.9037 40 1 3.7654 6.7756 2.6236 41 1 3.0082 5.9468 1.3963 42 1 3.1040 3.5880 0.8805 43 1 1.4172 4.1598 0.6955 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402931778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:34 Heat of formation + Delta-G solvation = -31.853249 kcal Electronic energy + Delta-G solvation = -20536.812761 eV Core-core repulsion = 17807.817196 eV Total energy + Delta-G solvation = -2728.995565 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41583 -37.88505 -35.28616 -34.60125 -32.88040 -31.06900 -29.90514 -27.65618 -26.58628 -25.57289 -24.43161 -22.96458 -21.29515 -20.94570 -19.47147 -18.74645 -17.00005 -16.96422 -16.24905 -15.65490 -15.53228 -15.35150 -15.06445 -14.87557 -14.49657 -14.34397 -14.12582 -13.79066 -13.32874 -13.28438 -12.76947 -12.63751 -12.48691 -12.04339 -11.97226 -11.87072 -11.78297 -11.64044 -11.58556 -11.56607 -11.48628 -11.29621 -11.05947 -10.49172 -10.43157 -9.60183 -9.11999 -8.54105 -6.23789 1.52067 1.58794 1.77678 2.57009 3.21200 3.31845 3.40613 3.60442 3.78634 3.96265 4.25090 4.27591 4.34307 4.40409 4.46922 4.54506 4.59027 4.62273 4.66250 4.70959 4.76847 4.86499 4.90666 5.02093 5.06048 5.09110 5.19321 5.19924 5.22102 5.32979 5.35700 5.38352 5.46490 5.54425 5.65180 5.72880 5.93061 6.08423 6.17866 6.36950 6.53406 6.57688 6.74496 7.52551 8.81725 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.007887 C = 0.006825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.994425 B = 3549.290189 C = 4101.778173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.105 4.105 3 C 0.201 3.799 4 H -0.053 1.053 5 C -0.572 4.572 6 H 0.045 0.955 7 C -0.027 4.027 8 N -0.938 5.938 9 Si 1.104 2.896 10 H -0.288 1.288 11 H -0.274 1.274 12 H -0.273 1.273 13 N -0.487 5.487 14 C 0.033 3.967 15 C -0.084 4.084 16 H 0.093 0.907 17 C -0.101 4.101 18 C -0.121 4.121 19 C -0.081 4.081 20 C -0.059 4.059 21 C 0.087 3.913 22 N -0.849 5.849 23 C 0.073 3.927 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.037 0.963 29 H 0.255 0.745 30 H 0.077 0.923 31 H 0.011 0.989 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.015 0.985 40 H 0.349 0.651 41 H 0.337 0.663 42 H 0.000 1.000 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.807 6.008 14.170 15.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.143 4.143 3 C 0.093 3.907 4 H -0.036 1.036 5 C -0.610 4.610 6 H 0.063 0.937 7 C -0.225 4.225 8 N -0.577 5.577 9 Si 0.927 3.073 10 H -0.213 1.213 11 H -0.199 1.199 12 H -0.198 1.198 13 N -0.210 5.210 14 C -0.096 4.096 15 C -0.103 4.103 16 H 0.111 0.889 17 C -0.139 4.139 18 C -0.158 4.158 19 C -0.118 4.118 20 C -0.060 4.060 21 C -0.044 4.044 22 N -0.379 5.379 23 C -0.056 4.056 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.029 0.971 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.033 0.967 40 H 0.163 0.837 41 H 0.149 0.851 42 H 0.019 0.981 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.188 5.984 12.911 14.583 hybrid contribution 2.448 -0.532 0.494 2.553 sum -0.740 5.452 13.405 14.490 Atomic orbital electron populations 1.21290 0.94761 0.99078 1.01250 1.21427 0.97687 0.97101 0.98123 1.19370 0.89997 0.92402 0.88968 1.03605 1.21967 1.29443 1.17514 0.92097 0.93703 1.26932 0.96350 0.95856 1.03347 1.70906 1.23791 1.28609 1.34359 0.83091 0.75724 0.75547 0.72903 1.21338 1.19944 1.19838 1.65274 1.52723 1.01541 1.01506 1.23253 0.95693 0.98344 0.92264 1.22517 0.99589 0.92653 0.95556 0.88898 1.22273 0.93120 1.00002 0.98474 1.22424 0.97608 0.96259 0.99558 1.22051 0.92664 0.96738 1.00359 1.21934 0.96709 0.94342 0.93031 1.21678 0.94461 0.89251 0.99036 1.58700 1.54617 1.13220 1.11380 1.22771 0.95834 0.91289 0.95664 0.93836 0.92365 0.94736 0.94858 0.94400 0.93445 0.90466 0.97057 0.91872 0.90013 0.92876 0.90907 0.93587 0.90779 0.89169 0.96724 0.83747 0.85073 0.98127 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.63 9.44 71.98 0.68 -3.95 16 2 C -0.10 -4.99 5.29 30.59 0.16 -4.83 16 3 C 0.20 10.14 1.16 44.17 0.05 10.19 16 4 H -0.05 -3.08 7.35 -2.39 -0.02 -3.09 16 5 C -0.57 -31.54 6.65 25.60 0.17 -31.37 16 6 H 0.04 2.52 7.11 -2.91 -0.02 2.50 16 7 C -0.03 -1.52 5.26 84.65 0.45 -1.07 16 8 N -0.94 -57.06 12.89 21.45 0.28 -56.78 16 9 Si 1.10 50.84 29.91 68.60 2.05 52.89 16 10 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 13 N -0.49 -20.35 3.69 -861.12 -3.18 -23.53 16 14 C 0.03 1.16 4.97 86.44 0.43 1.59 16 15 C -0.08 -2.30 3.59 -9.30 -0.03 -2.33 16 16 H 0.09 2.19 7.91 -2.39 -0.02 2.17 16 17 C -0.10 -2.41 6.27 31.62 0.20 -2.21 16 18 C -0.12 -3.22 6.52 31.86 0.21 -3.01 16 19 C -0.08 -2.21 5.55 31.62 0.18 -2.04 16 20 C -0.06 -1.72 0.78 -50.69 -0.04 -1.76 16 21 C 0.09 2.14 5.74 86.30 0.50 2.63 16 22 N -0.85 -20.14 9.33 -186.71 -1.74 -21.88 16 23 C 0.07 2.85 3.81 86.44 0.33 3.18 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 2.43 7.54 -2.38 -0.02 2.41 16 26 H 0.03 1.64 7.34 -2.39 -0.02 1.62 16 27 H 0.03 1.76 6.29 -2.38 -0.02 1.75 16 28 H 0.04 1.63 6.92 -2.39 -0.02 1.61 16 29 H 0.26 15.82 6.04 -92.71 -0.56 15.26 16 30 H 0.08 2.63 6.91 -2.39 -0.02 2.61 16 31 H 0.01 0.43 7.90 -2.38 -0.02 0.41 16 32 H 0.06 1.52 7.45 -2.38 -0.02 1.50 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.05 1.74 7.71 -2.39 -0.02 1.72 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.44 7.45 -2.39 -0.02 1.42 16 37 H 0.07 1.80 7.96 -2.39 -0.02 1.78 16 38 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.35 6.53 9.08 -89.70 -0.81 5.72 16 41 H 0.34 9.03 8.14 -89.69 -0.73 8.30 16 42 H 0.00 0.02 7.81 -2.38 -0.02 0.00 16 43 H 0.06 2.48 6.79 -2.38 -0.02 2.46 16 Total: -1.00 -62.40 316.58 0.33 -62.07 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -0.35 Total: 22.21 kcal Atomic # 6 Polarization: -38.25 SS G_CDS: 3.27 Total: -34.98 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -4.65 Total: -102.18 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.05 Total: 52.89 kcal Total: -62.40 0.33 -62.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402931778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.216 kcal (2) G-P(sol) polarization free energy of solvation -62.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds