Wall clock time and date at job start Mon Mar 30 2020 04:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00208 * 2 1 4 4 C 1.53002 * 109.46907 * 94.72898 * 3 2 1 5 5 C 1.50704 * 119.99921 * 179.73223 * 2 1 3 6 6 N 1.46892 * 109.47416 * 94.99194 * 5 2 1 7 7 C 1.46910 * 110.99918 * 45.70151 * 6 5 2 8 8 C 1.53236 * 109.34010 * 187.25449 * 7 6 5 9 9 H 1.08995 * 109.63194 * 65.87234 * 8 7 6 10 10 C 1.52994 * 109.78877 * 186.36679 * 8 7 6 11 11 N 1.47087 * 108.51831 * 306.16645 * 8 7 6 12 12 C 1.36935 * 120.87840 * 231.20638 * 11 8 7 13 13 H 1.08000 * 119.99705 * 126.44647 * 12 11 8 14 14 C 1.38806 * 120.00398 * 306.44818 * 12 11 8 15 15 N 1.31620 * 120.00188 * 338.07825 * 14 12 11 16 16 Si 1.86803 * 120.00106 * 158.08162 * 14 12 11 17 17 H 1.48495 * 109.47052 * 90.00398 * 16 14 12 18 18 H 1.48504 * 109.47010 * 209.99969 * 16 14 12 19 19 H 1.48499 * 109.46971 * 329.99690 * 16 14 12 20 20 C 1.47077 * 118.23744 * 51.18702 * 11 8 7 21 21 H 1.09008 * 109.78639 * 68.61951 * 20 11 8 22 22 C 1.53000 * 109.62643 * 189.10209 * 20 11 8 23 23 C 1.46903 * 111.00025 * 169.99649 * 6 5 2 24 24 H 1.07998 * 119.99696 * 0.26508 * 1 2 3 25 25 H 1.07999 * 120.00431 * 180.27858 * 1 2 3 26 26 H 1.09001 * 109.47227 * 214.72670 * 3 2 1 27 27 H 1.09005 * 109.47072 * 334.72773 * 3 2 1 28 28 H 1.09001 * 109.46990 * 299.99917 * 4 3 2 29 29 H 1.08991 * 109.47312 * 60.00100 * 4 3 2 30 30 H 1.09005 * 109.46621 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.46603 * 214.99714 * 5 2 1 32 32 H 1.09001 * 109.46812 * 334.98956 * 5 2 1 33 33 H 1.08997 * 109.48818 * 307.21030 * 7 6 5 34 34 H 1.08999 * 109.49326 * 67.29076 * 7 6 5 35 35 H 1.08994 * 109.47535 * 186.99630 * 10 8 7 36 36 H 1.09003 * 109.47123 * 306.98978 * 10 8 7 37 37 H 1.08998 * 109.47671 * 66.99219 * 10 8 7 38 38 H 0.96996 * 120.00349 * 185.05541 * 15 14 12 39 39 H 1.09009 * 109.46963 * 179.03047 * 22 20 11 40 40 H 1.08996 * 109.47089 * 299.02623 * 22 20 11 41 41 H 1.08998 * 109.46992 * 59.03684 * 22 20 11 42 42 H 1.08998 * 109.49278 * 292.71300 * 23 6 5 43 43 H 1.08998 * 109.48493 * 52.79414 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.4215 1.6872 1.4376 5 6 2.0635 -1.3051 0.0061 6 7 2.4127 -1.6754 -1.3718 7 6 2.9573 -0.5243 -2.1044 8 6 3.1382 -0.9005 -3.5788 9 1 2.1639 -1.0794 -4.0333 10 6 3.8504 0.2333 -4.3190 11 7 3.9499 -2.1250 -3.6522 12 6 5.0552 -2.1882 -4.4581 13 1 6.0075 -2.4874 -4.0459 14 6 4.9517 -1.8677 -5.8047 15 7 3.7827 -1.9247 -6.4068 16 14 6.4715 -1.3554 -6.7624 17 1 7.1129 -2.5574 -7.3530 18 1 6.0809 -0.4194 -7.8471 19 1 7.4288 -0.6820 -5.8484 20 6 3.5430 -3.2795 -2.8369 21 1 2.6084 -3.6901 -3.2191 22 6 4.6331 -4.3520 -2.8846 23 6 3.3461 -2.8096 -1.3917 24 1 -0.5399 0.9353 -0.0043 25 1 -0.5401 -0.9352 0.0045 26 1 2.9767 1.1974 -0.5854 27 1 1.4404 2.0844 -0.4388 28 1 1.5084 1.7949 2.0230 29 1 3.0446 0.9080 1.8763 30 1 2.9662 2.6314 1.4376 31 1 2.9742 -1.1960 0.5950 32 1 1.4386 -2.0834 0.4442 33 1 2.2678 0.3162 -2.0255 34 1 3.9214 -0.2456 -1.6791 35 1 3.8661 0.0165 -5.3871 36 1 3.3199 1.1696 -4.1462 37 1 4.8727 0.3217 -3.9512 38 1 3.7216 -1.7724 -7.3628 39 1 4.3367 -5.1991 -2.2658 40 1 4.7710 -4.6844 -3.9135 41 1 5.5680 -3.9368 -2.5084 42 1 4.3048 -2.4990 -0.9763 43 1 2.9385 -3.6264 -0.7960 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602855405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:32 Heat of formation + Delta-G solvation = 27.076324 kcal Electronic energy + Delta-G solvation = -20177.055533 eV Core-core repulsion = 17450.615347 eV Total energy + Delta-G solvation = -2726.440187 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.34270 -37.88152 -35.55741 -34.22233 -33.24458 -31.33499 -29.45750 -27.82869 -27.50273 -26.02341 -24.52553 -22.99395 -21.92717 -20.83281 -19.19740 -18.12263 -17.08464 -16.34586 -16.19972 -16.11852 -15.97017 -15.48007 -14.97154 -14.75470 -14.61175 -13.97483 -13.67145 -13.48527 -13.32489 -13.25994 -12.95173 -12.70414 -12.62916 -12.60221 -12.30777 -12.27289 -12.14046 -11.94102 -11.78807 -11.63928 -11.44139 -11.39332 -11.07646 -10.19036 -10.02975 -9.14517 -8.28809 -7.70901 -5.54041 1.34821 1.41702 1.46158 1.54239 2.48040 3.17590 3.23989 3.60554 3.85760 3.95391 4.24911 4.30339 4.35029 4.48075 4.50614 4.55338 4.62307 4.66405 4.74253 4.75350 4.85368 4.86604 4.89658 4.95777 4.96779 4.99833 5.03238 5.10538 5.17841 5.26524 5.35756 5.48460 5.54597 5.69385 5.73577 5.75696 5.83271 6.03275 6.26336 6.31817 6.60381 7.27189 7.84645 8.60598 9.16596 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026894 B = 0.006680 C = 0.005976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.881318 B = 4190.910652 C = 4684.454260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.132 4.132 3 C -0.100 4.100 4 C -0.139 4.139 5 C 0.091 3.909 6 N -0.542 5.542 7 C 0.062 3.938 8 C 0.194 3.806 9 H -0.005 1.005 10 C -0.131 4.131 11 N -0.594 5.594 12 C -0.268 4.268 13 H 0.043 0.957 14 C 0.001 3.999 15 N -0.909 5.909 16 Si 0.936 3.064 17 H -0.281 1.281 18 H -0.289 1.289 19 H -0.269 1.269 20 C 0.163 3.837 21 H 0.003 0.997 22 C -0.117 4.117 23 C 0.060 3.940 24 H 0.110 0.890 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.034 0.966 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.018 0.982 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.041 0.959 38 H 0.252 0.748 39 H 0.070 0.930 40 H 0.037 0.963 41 H 0.046 0.954 42 H 0.023 0.977 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 4.328 13.802 14.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.133 4.133 3 C -0.137 4.137 4 C -0.196 4.196 5 C -0.035 4.035 6 N -0.266 5.266 7 C -0.067 4.067 8 C 0.088 3.912 9 H 0.013 0.987 10 C -0.189 4.189 11 N -0.320 5.320 12 C -0.399 4.399 13 H 0.060 0.940 14 C -0.198 4.198 15 N -0.551 5.551 16 Si 0.763 3.237 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.193 1.193 20 C 0.057 3.943 21 H 0.021 0.979 22 C -0.175 4.175 23 C -0.070 4.070 24 H 0.128 0.872 25 H 0.117 0.883 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.791 4.257 13.415 14.576 hybrid contribution 1.334 0.278 -0.761 1.561 sum -2.457 4.535 12.654 13.665 Atomic orbital electron populations 1.23797 0.94843 1.02411 0.99935 1.21633 0.95803 0.94801 1.01029 1.20888 0.99999 0.94325 0.98528 1.21680 1.01711 1.01218 0.95004 1.21187 0.98314 0.95256 0.88780 1.62049 1.43517 1.07123 1.13869 1.22701 0.96438 0.92901 0.94700 1.20278 0.92216 0.86950 0.91777 0.98687 1.21782 0.99098 0.96087 1.01960 1.44304 1.29768 1.08120 1.49781 1.18683 0.87565 1.44942 0.88668 0.93977 1.26091 0.97528 0.98504 0.97702 1.70192 1.25371 1.50587 1.08901 0.85815 0.81058 0.78258 0.78592 1.20754 1.21523 1.19342 1.20692 0.94884 0.88877 0.89882 0.97885 1.21557 0.97938 0.97259 1.00736 1.22514 0.93224 0.93527 0.97693 0.87222 0.88275 0.92175 0.90705 0.91907 0.93244 0.91776 0.94798 0.89757 0.89835 0.96343 0.92585 0.93081 0.93946 0.93851 0.91096 0.94387 0.93504 0.95884 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 13.88 67.78 0.94 -2.97 16 2 C -0.13 -3.33 3.63 -16.49 -0.06 -3.39 16 3 C -0.10 -2.31 5.09 29.85 0.15 -2.16 16 4 C -0.14 -2.60 9.89 71.98 0.71 -1.89 16 5 C 0.09 2.57 5.46 85.56 0.47 3.04 16 6 N -0.54 -19.45 4.77 -899.81 -4.29 -23.75 16 7 C 0.06 2.39 3.45 86.38 0.30 2.69 16 8 C 0.19 9.26 3.21 44.96 0.14 9.41 16 9 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 10 C -0.13 -6.08 7.98 71.98 0.57 -5.50 16 11 N -0.59 -30.18 2.81 -650.66 -1.83 -32.01 16 12 C -0.27 -14.54 6.71 84.03 0.56 -13.97 16 13 H 0.04 2.32 7.19 -2.91 -0.02 2.30 16 14 C 0.00 0.07 3.21 84.86 0.27 0.35 16 15 N -0.91 -53.31 12.10 21.65 0.26 -53.04 16 16 Si 0.94 43.68 29.61 68.60 2.03 45.71 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 C 0.16 7.22 3.66 44.96 0.16 7.39 16 21 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 22 C -0.12 -4.65 8.19 71.98 0.59 -4.06 16 23 C 0.06 2.18 4.87 86.38 0.42 2.60 16 24 H 0.11 2.12 7.99 -2.91 -0.02 2.09 16 25 H 0.10 2.22 7.99 -2.91 -0.02 2.20 16 26 H 0.06 1.60 5.64 -2.39 -0.01 1.59 16 27 H 0.07 1.59 7.99 -2.38 -0.02 1.57 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.03 0.94 8.08 -2.39 -0.02 0.92 16 32 H 0.08 2.16 7.99 -2.39 -0.02 2.14 16 33 H 0.08 2.96 5.17 -2.39 -0.01 2.95 16 34 H 0.02 0.74 7.66 -2.39 -0.02 0.72 16 35 H 0.06 2.92 5.14 -2.39 -0.01 2.91 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.04 1.96 7.68 -2.39 -0.02 1.94 16 38 H 0.25 14.29 8.32 -92.71 -0.77 13.52 16 39 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 40 H 0.04 1.69 7.69 -2.39 -0.02 1.67 16 41 H 0.05 1.85 7.57 -2.39 -0.02 1.83 16 42 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.09 2.65 8.11 -2.39 -0.02 2.63 16 Total: -1.00 -61.44 325.20 2.35 -59.09 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.94 Total: 12.48 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 5.24 Total: -8.48 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -5.86 Total: -108.80 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -61.44 2.35 -59.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602855405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.168 kcal (2) G-P(sol) polarization free energy of solvation -61.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds