Wall clock time and date at job start Mon Mar 30 2020 04:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99393 * 2 1 4 4 C 1.52995 * 109.47120 * 93.89268 * 3 2 1 5 5 C 1.50697 * 120.00000 * 180.02562 * 2 1 3 6 6 N 1.46899 * 109.46860 * 264.45735 * 5 2 1 7 7 C 1.47331 * 110.93161 * 71.14846 * 6 5 2 8 8 C 1.53240 * 109.11001 * 187.17018 * 7 6 5 9 9 H 1.08993 * 109.63082 * 66.05685 * 8 7 6 10 10 C 1.53004 * 109.62429 * 186.44308 * 8 7 6 11 11 N 1.47077 * 108.68265 * 306.24887 * 8 7 6 12 12 C 1.36939 * 120.87967 * 231.30428 * 11 8 7 13 13 H 1.07999 * 120.00331 * 30.15481 * 12 11 8 14 14 C 1.38816 * 119.99811 * 210.15315 * 12 11 8 15 15 N 1.31615 * 120.00227 * 10.56632 * 14 12 11 16 16 Si 1.86807 * 119.99831 * 190.56241 * 14 12 11 17 17 H 1.48503 * 109.46884 * 60.00032 * 16 14 12 18 18 H 1.48493 * 109.46951 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47028 * 299.99925 * 16 14 12 20 20 C 1.47077 * 118.24043 * 51.28435 * 11 8 7 21 21 H 1.09003 * 109.63293 * 189.10282 * 20 11 8 22 22 C 1.52997 * 109.62780 * 68.71708 * 20 11 8 23 23 C 1.46903 * 110.99955 * 195.52371 * 6 5 2 24 24 H 1.07997 * 120.00105 * 359.97438 * 1 2 3 25 25 H 1.08000 * 119.99878 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.46698 * 213.88854 * 3 2 1 27 27 H 1.08991 * 109.47792 * 333.88602 * 3 2 1 28 28 H 1.09000 * 109.46953 * 299.99216 * 4 3 2 29 29 H 1.09001 * 109.47491 * 59.99130 * 4 3 2 30 30 H 1.09000 * 109.47643 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.46688 * 144.46167 * 5 2 1 32 32 H 1.08994 * 109.47069 * 24.46218 * 5 2 1 33 33 H 1.09002 * 109.45807 * 67.37077 * 7 6 5 34 34 H 1.08997 * 109.74873 * 307.15030 * 7 6 5 35 35 H 1.08998 * 109.46770 * 179.61261 * 10 8 7 36 36 H 1.09003 * 109.47202 * 299.61001 * 10 8 7 37 37 H 1.08997 * 109.47443 * 59.61835 * 10 8 7 38 38 H 0.97000 * 119.99775 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.47144 * 60.00358 * 22 20 11 40 40 H 1.09000 * 109.47480 * 180.02562 * 22 20 11 41 41 H 1.08998 * 109.47472 * 300.00488 * 22 20 11 42 42 H 1.09005 * 109.48754 * 52.79030 * 23 6 5 43 43 H 1.08994 * 109.51410 * 292.72206 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.4032 1.6979 1.4391 5 6 2.0635 -1.3051 -0.0006 6 7 2.4242 -1.6628 1.3778 7 6 1.2337 -2.0690 2.1448 8 6 1.6244 -2.2589 3.6143 9 1 1.9124 -1.2994 4.0436 10 6 0.4384 -2.8343 4.3912 11 7 2.7595 -3.1917 3.6832 12 6 2.7247 -4.2810 4.5123 13 1 1.7817 -4.7542 4.7429 14 6 3.9015 -4.7772 5.0562 15 7 5.0178 -4.0881 4.9492 16 14 3.9009 -6.4229 5.9401 17 1 3.4618 -7.4879 5.0030 18 1 5.2714 -6.7243 6.4258 19 1 2.9688 -6.3642 7.0947 20 6 3.9328 -2.9237 2.8378 21 1 4.6130 -3.7746 2.8750 22 6 4.6513 -1.6691 3.3385 23 6 3.4559 -2.7084 1.3975 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 2.9839 1.1933 -0.5731 27 1 1.4460 2.0812 -0.4523 28 1 1.4827 1.8098 2.0121 29 1 3.0206 0.9219 1.8915 30 1 2.9485 2.6417 1.4392 31 1 2.9693 -1.2013 -0.5979 32 1 1.4351 -2.0872 -0.4265 33 1 0.8480 -3.0076 1.7467 34 1 0.4662 -1.2987 2.0691 35 1 0.7213 -2.9748 5.4344 36 1 -0.4034 -2.1443 4.3327 37 1 0.1526 -3.7937 3.9599 38 1 5.8402 -4.4350 5.3289 39 1 4.9745 -1.8221 4.3682 40 1 5.5199 -1.4726 2.7101 41 1 3.9711 -0.8186 3.2939 42 1 4.2980 -2.4000 0.7778 43 1 3.0397 -3.6379 1.0094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602855406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:36 Heat of formation + Delta-G solvation = 39.905990 kcal Electronic energy + Delta-G solvation = -20340.259361 eV Core-core repulsion = 17614.375511 eV Total energy + Delta-G solvation = -2725.883850 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.69755 -36.39591 -33.86220 -32.47326 -31.23013 -29.96259 -27.85810 -26.42470 -25.66294 -23.99112 -23.17027 -21.82309 -20.59163 -18.56465 -18.07586 -16.18102 -15.38046 -14.86709 -14.84026 -14.62011 -13.82834 -13.77680 -13.44277 -13.16035 -12.88594 -12.77467 -12.33116 -11.88019 -11.76230 -11.52537 -11.48683 -11.00043 -10.87835 -10.75705 -10.68110 -10.65971 -10.47470 -10.42810 -10.32589 -9.95998 -9.83183 -9.40596 -9.17388 -8.92540 -8.38321 -7.65365 -6.49326 -5.69423 -3.15638 2.37488 3.40812 3.46559 3.47194 4.52313 4.62732 4.98357 5.02734 5.39824 5.46643 5.50653 5.59723 5.70805 5.78411 5.85550 5.92005 6.00026 6.05816 6.15894 6.17257 6.22765 6.28130 6.31726 6.39492 6.43763 6.51176 6.65608 6.71584 6.76556 6.93762 7.03618 7.04588 7.12983 7.19385 7.32664 7.63200 7.71026 7.81305 7.94404 8.05098 8.55832 9.32660 9.93365 10.53328 11.37430 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.032721 B = 0.006504 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.506447 B = 4303.695343 C = 4599.565184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 C -0.080 4.080 4 C -0.144 4.144 5 C 0.084 3.916 6 N -0.520 5.520 7 C 0.048 3.952 8 C 0.173 3.827 9 H 0.032 0.968 10 C -0.137 4.137 11 N -0.585 5.585 12 C -0.247 4.247 13 H 0.067 0.933 14 C 0.003 3.997 15 N -0.901 5.901 16 Si 0.900 3.100 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.284 1.284 20 C 0.200 3.800 21 H 0.094 0.906 22 C -0.133 4.133 23 C 0.041 3.959 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.023 0.977 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.050 0.950 38 H 0.252 0.748 39 H 0.072 0.928 40 H 0.018 0.982 41 H 0.032 0.968 42 H 0.058 0.942 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.668 7.612 -8.638 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.097 4.097 3 C -0.117 4.117 4 C -0.201 4.201 5 C -0.044 4.044 6 N -0.244 5.244 7 C -0.082 4.082 8 C 0.066 3.934 9 H 0.049 0.951 10 C -0.195 4.195 11 N -0.308 5.308 12 C -0.377 4.377 13 H 0.084 0.916 14 C -0.195 4.195 15 N -0.546 5.546 16 Si 0.731 3.269 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.211 1.211 20 C 0.093 3.907 21 H 0.112 0.888 22 C -0.192 4.192 23 C -0.088 4.088 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.037 0.963 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -5.289 7.951 -8.324 12.668 hybrid contribution -0.314 -1.598 0.019 1.629 sum -5.603 6.353 -8.305 11.863 Atomic orbital electron populations 1.23608 0.95319 1.01285 1.03903 1.21702 0.94909 0.95624 0.97417 1.20516 0.99358 0.93739 0.98136 1.21692 1.01733 1.01138 0.95537 1.21172 0.98470 0.93143 0.91606 1.62017 1.10754 1.41520 1.10098 1.22779 0.91548 0.97372 0.96458 1.20443 0.88767 0.93284 0.90897 0.95065 1.21802 0.96554 0.99771 1.01418 1.44222 1.14228 1.25956 1.46435 1.19123 0.93430 1.03852 1.21267 0.91570 1.25108 0.96867 0.98795 0.98747 1.69949 0.99319 1.36784 1.48534 0.86412 0.76554 0.84279 0.79693 1.21296 1.21734 1.21082 1.20383 0.88709 0.97587 0.84031 0.88789 1.21955 0.97248 0.97759 1.02234 1.22898 0.93287 0.91122 1.01479 0.88830 0.88947 0.91792 0.92412 0.93274 0.90425 0.93605 0.91028 0.95140 0.95874 0.91804 0.91872 0.94365 0.93122 0.93787 0.90862 0.96280 0.94892 0.92336 0.96085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.53 12.46 29.01 0.36 -2.17 16 2 C -0.10 -1.28 4.37 -101.07 -0.44 -1.73 16 3 C -0.08 -0.97 6.10 -27.88 -0.17 -1.14 16 4 C -0.14 -1.89 9.89 37.16 0.37 -1.52 16 5 C 0.08 1.26 5.16 -4.98 -0.03 1.23 16 6 N -0.52 -9.26 3.88 -235.40 -0.91 -10.17 16 7 C 0.05 0.89 4.74 -3.46 -0.02 0.87 16 8 C 0.17 3.67 3.25 -67.49 -0.22 3.45 16 9 H 0.03 0.72 7.63 -51.93 -0.40 0.32 16 10 C -0.14 -2.65 7.96 37.16 0.30 -2.35 16 11 N -0.59 -14.34 2.72 -157.01 -0.43 -14.77 16 12 C -0.25 -6.59 8.64 -15.06 -0.13 -6.72 16 13 H 0.07 1.74 6.25 -52.49 -0.33 1.41 16 14 C 0.00 0.08 5.07 -17.43 -0.09 -0.01 16 15 N -0.90 -25.25 9.53 55.49 0.53 -24.72 16 16 Si 0.90 21.58 29.57 -169.99 -5.03 16.55 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C 0.20 4.67 2.33 -67.49 -0.16 4.52 16 21 H 0.09 2.51 6.18 -51.93 -0.32 2.19 16 22 C -0.13 -3.03 8.95 37.16 0.33 -2.70 16 23 C 0.04 0.81 5.01 -3.70 -0.02 0.79 16 24 H 0.09 1.04 8.00 -52.49 -0.42 0.62 16 25 H 0.09 1.16 7.97 -52.49 -0.42 0.74 16 26 H 0.06 0.75 8.13 -51.92 -0.42 0.33 16 27 H 0.06 0.62 8.00 -51.93 -0.42 0.20 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.22 7.94 -51.93 -0.41 0.81 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.02 7.85 -51.93 -0.41 0.61 16 32 H 0.03 0.46 7.90 -51.93 -0.41 0.05 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 1.09 6.25 -51.93 -0.32 0.76 16 35 H 0.06 1.30 7.59 -51.93 -0.39 0.90 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.99 7.54 -51.93 -0.39 0.59 16 38 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.07 1.90 6.79 -51.93 -0.35 1.55 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.03 0.72 7.10 -51.93 -0.37 0.35 16 42 H 0.06 1.07 7.93 -51.93 -0.41 0.65 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 327.19 15.07 4.93 4.93 Total: -1.00 -27.24 327.19 -8.68 -35.93 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.87 Total: -0.27 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 0.09 Total: -7.48 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.81 Total: -49.67 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.24 -8.68 -35.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602855406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.835 kcal (2) G-P(sol) polarization free energy of solvation -27.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds