Wall clock time and date at job start Mon Mar 30 2020 04:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47022 * 2 1 4 4 H 1.09001 * 109.46847 * 181.18590 * 3 2 1 5 5 C 1.50697 * 109.46954 * 301.18161 * 3 2 1 6 6 H 1.07998 * 119.99900 * 120.00015 * 5 3 2 7 7 C 1.37879 * 120.00316 * 300.00647 * 5 3 2 8 8 N 1.31516 * 119.99845 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00067 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47372 * 89.99634 * 9 7 5 11 11 H 1.48504 * 109.46750 * 209.99547 * 9 7 5 12 12 H 1.48496 * 109.46878 * 329.99270 * 9 7 5 13 13 N 1.46899 * 109.47288 * 61.18654 * 3 2 1 14 14 C 1.48643 * 111.00191 * 63.66086 * 13 3 2 15 15 C 1.54623 * 104.64449 * 158.57632 * 14 13 3 16 16 H 1.08997 * 110.39703 * 95.20219 * 15 14 13 17 17 C 1.53006 * 110.39490 * 217.49360 * 15 14 13 18 18 N 1.46900 * 109.47014 * 291.98192 * 17 15 14 19 19 C 1.53356 * 104.77135 * 336.34547 * 15 14 13 20 20 C 1.52792 * 115.65696 * 230.67164 * 19 15 14 21 21 C 1.53958 * 86.78148 * 217.46074 * 20 19 15 22 22 C 1.52803 * 115.62923 * 129.73610 * 19 15 14 23 23 C 1.48791 * 110.99786 * 179.29035 * 13 3 2 24 24 H 1.09007 * 109.46965 * 65.43956 * 1 2 3 25 25 H 1.09000 * 109.47212 * 185.43558 * 1 2 3 26 26 H 1.08997 * 109.47662 * 305.44095 * 1 2 3 27 27 H 1.09000 * 109.46939 * 239.99540 * 2 1 3 28 28 H 1.09007 * 109.46709 * 119.99922 * 2 1 3 29 29 H 0.97003 * 120.00089 * 180.02562 * 8 7 5 30 30 H 1.09000 * 110.39983 * 39.78501 * 14 13 3 31 31 H 1.08998 * 110.49629 * 277.41734 * 14 13 3 32 32 H 1.08997 * 109.46574 * 171.98408 * 17 15 14 33 33 H 1.08995 * 109.47322 * 51.98233 * 17 15 14 34 34 H 1.00899 * 110.99787 * 56.04886 * 18 17 15 35 35 H 1.00896 * 110.99887 * 180.02562 * 18 17 15 36 36 H 1.09000 * 113.66051 * 331.93668 * 20 19 15 37 37 H 1.08997 * 113.66303 * 102.98406 * 20 19 15 38 38 H 1.09001 * 113.58622 * 270.09185 * 21 20 19 39 39 H 1.09009 * 113.58061 * 139.29315 * 21 20 19 40 40 H 1.09001 * 113.66388 * 257.03037 * 22 19 15 41 41 H 1.08993 * 113.66467 * 28.00201 * 22 19 15 42 42 H 1.09000 * 110.45852 * 320.46758 * 23 13 3 43 43 H 1.08999 * 110.46033 * 82.90572 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4425 -0.0213 5 6 1.5138 2.1612 -1.2155 6 1 0.8950 3.0386 -1.0984 7 6 1.8223 1.6988 -2.4773 8 7 2.5762 0.6306 -2.6200 9 14 1.1707 2.5902 -3.9840 10 1 2.1413 3.6343 -4.3998 11 1 0.9839 1.6187 -5.0916 12 1 -0.1312 3.2260 -3.6584 13 7 1.5739 2.1267 1.2135 14 6 2.1454 1.4973 2.4328 15 6 2.0452 2.5912 3.5210 16 1 1.1353 2.4618 4.1070 17 6 3.2746 2.5522 4.4310 18 7 3.2576 1.3159 5.2243 19 6 1.9971 3.9125 2.7440 20 6 2.9881 4.9832 3.1978 21 6 1.8758 6.0093 2.9145 22 6 0.8676 4.8660 3.1308 23 6 2.0658 3.5303 1.2565 24 1 -0.3633 0.4272 -0.9348 25 1 -0.3633 -1.0230 0.0973 26 1 -0.3634 0.5959 0.8372 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8901 29 1 2.7936 0.3055 -3.5077 30 1 3.1867 1.2218 2.2657 31 1 1.5628 0.6218 2.7192 32 1 3.2591 3.4130 5.0995 33 1 4.1783 2.5810 3.8224 34 1 3.2064 0.5040 4.6273 35 1 4.0598 1.2666 5.8342 36 1 3.2585 4.9107 4.2512 37 1 3.8535 5.0841 2.5429 38 1 1.8867 6.3941 1.8948 39 1 1.8086 6.7978 3.6643 40 1 0.0392 4.8733 2.4223 41 1 0.5400 4.7595 4.1649 42 1 3.0926 3.5853 0.8949 43 1 1.4194 4.1788 0.6653 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693684951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:28 Heat of formation + Delta-G solvation = 0.426818 kcal Electronic energy + Delta-G solvation = -20177.108722 eV Core-core repulsion = 17449.512927 eV Total energy + Delta-G solvation = -2727.595796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50126 -38.15702 -36.17958 -34.75392 -32.99517 -30.67752 -28.33686 -28.19624 -26.78774 -25.41734 -24.47620 -23.19711 -21.51794 -20.75238 -18.93583 -18.07999 -17.34279 -16.79377 -16.67578 -16.08116 -15.62451 -15.41965 -15.06883 -14.72494 -14.42713 -14.13387 -14.05425 -13.71156 -13.22314 -13.04411 -12.90928 -12.83526 -12.63226 -12.51583 -12.32909 -12.17303 -11.78324 -11.72590 -11.53417 -11.31633 -11.09439 -10.91726 -10.82415 -10.77255 -10.50585 -9.60694 -9.04755 -8.10694 -6.20510 1.38294 1.40144 1.50150 2.40942 3.17142 3.31777 3.52546 3.66922 3.73394 3.95363 4.03856 4.09994 4.28041 4.44353 4.55243 4.56305 4.63289 4.70579 4.71507 4.79105 4.85501 4.87261 4.94280 4.99012 5.06440 5.12062 5.18430 5.21480 5.24324 5.35478 5.43507 5.48520 5.53175 5.62165 5.71421 5.73251 5.84092 6.20849 6.25190 6.36147 6.60115 6.66142 6.91775 7.47286 8.95210 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022546 B = 0.007222 C = 0.006063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.608950 B = 3876.093320 C = 4616.892257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.103 4.103 3 C 0.216 3.784 4 H -0.046 1.046 5 C -0.505 4.505 6 H 0.052 0.948 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.506 5.506 14 C 0.041 3.959 15 C -0.067 4.067 16 H 0.084 0.916 17 C 0.078 3.922 18 N -0.854 5.854 19 C -0.083 4.083 20 C -0.128 4.128 21 C -0.133 4.133 22 C -0.119 4.119 23 C 0.077 3.923 24 H 0.031 0.969 25 H 0.038 0.962 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.025 0.975 29 H 0.260 0.740 30 H 0.014 0.986 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.016 0.984 34 H 0.340 0.660 35 H 0.350 0.650 36 H 0.105 0.895 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.096 0.904 42 H 0.013 0.987 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.556 6.100 13.781 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.142 4.142 3 C 0.109 3.891 4 H -0.029 1.029 5 C -0.543 4.543 6 H 0.070 0.930 7 C -0.184 4.184 8 N -0.560 5.560 9 Si 0.777 3.223 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.194 1.194 13 N -0.229 5.229 14 C -0.088 4.088 15 C -0.086 4.086 16 H 0.102 0.898 17 C -0.053 4.053 18 N -0.384 5.384 19 C -0.085 4.085 20 C -0.165 4.165 21 C -0.171 4.171 22 C -0.156 4.156 23 C -0.051 4.051 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.033 0.967 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.034 0.966 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.123 0.877 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.074 0.926 41 H 0.114 0.886 42 H 0.031 0.969 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.635 6.228 13.913 15.257 hybrid contribution 1.784 -0.231 -2.052 2.729 sum 1.149 5.997 11.861 13.340 Atomic orbital electron populations 1.21300 0.95724 0.98644 1.00740 1.21372 0.96507 0.97287 0.98995 1.19186 0.90161 0.92170 0.87583 1.02907 1.21224 1.30689 1.11610 0.90785 0.93008 1.25611 0.95512 0.95761 1.01485 1.70014 1.38467 1.24272 1.23205 0.85663 0.78894 0.78387 0.79392 1.20390 1.20865 1.19371 1.65385 1.53818 1.01747 1.01973 1.23127 0.96103 0.98056 0.91481 1.21694 0.99272 0.93128 0.94510 0.89790 1.21846 0.94948 0.93707 0.94806 1.58763 1.49623 1.04460 1.25523 1.21994 0.99108 0.93849 0.93507 1.22991 0.96361 0.94991 1.02151 1.22822 0.95814 0.96591 1.01826 1.22811 0.95928 0.95074 1.01799 1.22497 0.96499 0.91329 0.94811 0.94965 0.94263 0.92933 0.92172 0.95607 0.93085 0.96731 0.91111 0.89104 0.96585 0.84805 0.83701 0.87655 0.92545 0.91271 0.89532 0.92607 0.88572 0.96878 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.79 9.47 71.98 0.68 -4.11 16 2 C -0.10 -5.08 5.31 30.59 0.16 -4.92 16 3 C 0.22 11.16 1.52 44.17 0.07 11.23 16 4 H -0.05 -2.73 7.98 -2.39 -0.02 -2.75 16 5 C -0.50 -27.95 6.89 25.60 0.18 -27.78 16 6 H 0.05 2.90 7.02 -2.91 -0.02 2.88 16 7 C 0.01 0.83 5.30 84.65 0.45 1.27 16 8 N -0.92 -53.49 11.33 21.45 0.24 -53.25 16 9 Si 0.95 44.31 29.54 68.60 2.03 46.34 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 13 N -0.51 -21.87 4.38 -860.69 -3.77 -25.64 16 14 C 0.04 1.48 4.29 86.52 0.37 1.85 16 15 C -0.07 -1.92 3.05 -10.12 -0.03 -1.95 16 16 H 0.08 2.42 7.95 -2.39 -0.02 2.41 16 17 C 0.08 1.82 5.15 86.31 0.44 2.27 16 18 N -0.85 -18.25 9.62 -186.72 -1.80 -20.05 16 19 C -0.08 -2.44 1.14 -51.96 -0.06 -2.50 16 20 C -0.13 -3.00 6.51 30.85 0.20 -2.80 16 21 C -0.13 -2.96 7.94 31.24 0.25 -2.71 16 22 C -0.12 -2.99 7.19 30.85 0.22 -2.77 16 23 C 0.08 3.05 4.95 86.18 0.43 3.48 16 24 H 0.03 1.56 7.39 -2.38 -0.02 1.54 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 2.27 7.48 -2.39 -0.02 2.25 16 27 H 0.06 3.33 6.10 -2.39 -0.01 3.31 16 28 H 0.03 1.15 6.99 -2.38 -0.02 1.14 16 29 H 0.26 14.44 8.31 -92.71 -0.77 13.66 16 30 H 0.01 0.56 7.55 -2.39 -0.02 0.54 16 31 H 0.07 2.54 7.69 -2.39 -0.02 2.52 16 32 H 0.09 1.81 6.30 -2.39 -0.02 1.79 16 33 H 0.02 0.41 7.99 -2.39 -0.02 0.39 16 34 H 0.34 7.65 8.26 -89.69 -0.74 6.91 16 35 H 0.35 5.85 9.08 -89.70 -0.81 5.04 16 36 H 0.11 2.00 5.94 -2.39 -0.01 1.99 16 37 H 0.06 1.44 8.05 -2.39 -0.02 1.42 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.06 1.58 8.05 -2.39 -0.02 1.56 16 41 H 0.10 2.07 8.13 -2.39 -0.02 2.05 16 42 H 0.01 0.57 7.86 -2.39 -0.02 0.55 16 43 H 0.06 2.52 7.27 -2.39 -0.02 2.51 16 Total: -1.00 -60.95 320.70 -0.51 -61.46 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -0.57 Total: 20.58 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: 3.36 Total: -29.44 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -5.33 Total: -98.94 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -60.95 -0.51 -61.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693684951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.890 kcal (2) G-P(sol) polarization free energy of solvation -60.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds