Wall clock time and date at job start Mon Mar 30 2020 04:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47220 * 2 1 4 4 H 1.08991 * 109.46793 * 179.64719 * 3 2 1 5 5 C 1.50696 * 109.46957 * 59.64437 * 3 2 1 6 6 H 1.07997 * 120.00025 * 245.95867 * 5 3 2 7 7 C 1.37877 * 120.00282 * 65.96702 * 5 3 2 8 8 N 1.31517 * 119.99803 * 6.23884 * 7 5 3 9 9 Si 1.86794 * 120.00431 * 186.24750 * 7 5 3 10 10 H 1.48499 * 109.47380 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.46891 * 299.99504 * 9 7 5 12 12 H 1.48495 * 109.47483 * 59.99062 * 9 7 5 13 13 N 1.46900 * 109.46766 * 299.64697 * 3 2 1 14 14 C 1.48646 * 111.00228 * 82.59256 * 13 3 2 15 15 C 1.54622 * 104.64288 * 201.42045 * 14 13 3 16 16 H 1.08998 * 110.39597 * 264.90151 * 15 14 13 17 17 C 1.53000 * 110.39742 * 142.49819 * 15 14 13 18 18 N 1.46901 * 109.47021 * 66.45144 * 17 15 14 19 19 C 1.53353 * 104.67099 * 23.70327 * 15 14 13 20 20 C 1.52804 * 115.62635 * 230.22857 * 19 15 14 21 21 C 1.53954 * 86.77941 * 217.42913 * 20 19 15 22 22 C 1.52793 * 115.66089 * 129.29634 * 19 15 14 23 23 C 1.48791 * 111.00352 * 326.96023 * 13 3 2 24 24 H 1.08998 * 109.47416 * 188.63670 * 1 2 3 25 25 H 1.08998 * 109.46852 * 308.63669 * 1 2 3 26 26 H 1.09000 * 109.47061 * 68.63284 * 1 2 3 27 27 H 1.08994 * 109.46797 * 239.99847 * 2 1 3 28 28 H 1.09000 * 109.46928 * 120.00095 * 2 1 3 29 29 H 0.97003 * 120.00220 * 355.35198 * 8 7 5 30 30 H 1.08998 * 110.39896 * 320.21050 * 14 13 3 31 31 H 1.08998 * 110.40581 * 82.51201 * 14 13 3 32 32 H 1.09000 * 109.47452 * 186.45391 * 17 15 14 33 33 H 1.09001 * 109.47220 * 306.45510 * 17 15 14 34 34 H 1.00900 * 110.99919 * 56.04846 * 18 17 15 35 35 H 1.00899 * 111.00360 * 179.97438 * 18 17 15 36 36 H 1.09005 * 113.66638 * 331.89998 * 20 19 15 37 37 H 1.09004 * 113.66387 * 102.95890 * 20 19 15 38 38 H 1.08996 * 113.58561 * 270.09777 * 21 20 19 39 39 H 1.09008 * 113.65858 * 139.29887 * 21 20 19 40 40 H 1.09001 * 113.65863 * 257.00313 * 22 19 15 41 41 H 1.08995 * 113.66370 * 28.06466 * 22 19 15 42 42 H 1.08998 * 110.45980 * 276.98250 * 23 13 3 43 43 H 1.09002 * 110.45251 * 39.54912 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1300 1.4424 0.0063 5 6 1.5306 2.1554 1.2260 6 1 0.8334 2.9739 1.1241 7 6 1.9546 1.7629 2.4779 8 7 2.8944 0.8508 2.5978 9 14 1.1941 2.5265 4.0036 10 1 1.8185 1.9377 5.2155 11 1 1.4247 3.9934 3.9904 12 1 -0.2658 2.2552 4.0179 13 7 1.5574 2.1325 -1.2037 14 6 0.1707 2.6322 -1.0114 15 6 -0.3822 2.8122 -2.4441 16 1 -0.2536 3.8431 -2.7741 17 6 -1.8582 2.4133 -2.5002 18 7 -2.6510 3.3563 -1.7002 19 6 0.4605 1.8655 -3.3074 20 6 1.0691 2.4837 -4.5653 21 6 0.7827 1.1397 -5.2593 22 6 -0.3263 0.9203 -4.2141 23 6 1.4557 1.1925 -2.3526 24 1 -0.3634 -1.0160 0.1543 25 1 -0.3633 0.6416 0.8027 26 1 -0.3633 0.3744 -0.9570 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.2417 0.4055 1.8090 30 1 -0.4240 1.9011 -0.4637 31 1 0.1801 3.5856 -0.4832 32 1 -2.2016 2.4359 -3.5344 33 1 -1.9780 1.4067 -2.0995 34 1 -2.5064 4.3052 -2.0114 35 1 -3.6304 3.1144 -1.7215 36 1 0.4910 3.3157 -4.9676 37 1 2.1312 2.7102 -4.4716 38 1 1.6025 0.4255 -5.1819 39 1 0.4078 1.2443 -6.2775 40 1 -0.3786 -0.1021 -3.8399 41 1 -1.2970 1.3121 -4.5175 42 1 2.4260 1.0739 -2.8349 43 1 1.0730 0.2269 -2.0220 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693684953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:31 Heat of formation + Delta-G solvation = 42.000130 kcal Electronic energy + Delta-G solvation = -20661.026541 eV Core-core repulsion = 17935.233499 eV Total energy + Delta-G solvation = -2725.793042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.52752 -37.17550 -34.92541 -32.93564 -30.95016 -29.14924 -27.56540 -25.98077 -25.48517 -24.14035 -22.76360 -22.01229 -19.90231 -19.32569 -17.84578 -16.60105 -16.02315 -15.40339 -14.91514 -14.61927 -14.50945 -13.83307 -13.67191 -13.58973 -13.13966 -12.80563 -12.27865 -12.06581 -11.53920 -11.49365 -11.34019 -11.10545 -10.98349 -10.73714 -10.63270 -10.53662 -10.36076 -10.22007 -10.06276 -9.90585 -9.77335 -9.56206 -9.46722 -8.47192 -8.42454 -8.15788 -7.12183 -6.24627 -3.97011 3.48958 3.49949 3.68349 4.53145 4.59881 4.70586 4.80629 4.83917 4.96037 5.30439 5.37051 5.44429 5.48219 5.61217 5.71923 5.78912 5.86482 5.91799 5.99433 6.07595 6.10758 6.16271 6.18428 6.27125 6.33091 6.35840 6.46575 6.61695 6.66469 6.73766 6.89909 6.92091 7.15701 7.21570 7.25841 7.34447 7.47335 7.54389 7.74871 8.20755 8.45099 8.64186 8.96204 9.72637 11.09990 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026136 B = 0.007524 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.060595 B = 3720.705034 C = 4250.980315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.151 4.151 3 C 0.191 3.809 4 H 0.031 0.969 5 C -0.586 4.586 6 H 0.061 0.939 7 C 0.021 3.979 8 N -0.915 5.915 9 Si 1.064 2.936 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.502 5.502 14 C 0.051 3.949 15 C -0.085 4.085 16 H 0.067 0.933 17 C 0.074 3.926 18 N -0.846 5.846 19 C -0.074 4.074 20 C -0.124 4.124 21 C -0.140 4.140 22 C -0.137 4.137 23 C 0.037 3.963 24 H 0.024 0.976 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.031 0.969 28 H 0.065 0.935 29 H 0.270 0.730 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.021 0.979 33 H 0.070 0.930 34 H 0.337 0.663 35 H 0.336 0.664 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.567 1.007 -13.239 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.191 4.191 3 C 0.083 3.917 4 H 0.049 0.951 5 C -0.625 4.625 6 H 0.079 0.921 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.892 3.108 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.225 5.225 14 C -0.076 4.076 15 C -0.105 4.105 16 H 0.085 0.915 17 C -0.057 4.057 18 N -0.375 5.375 19 C -0.075 4.075 20 C -0.161 4.161 21 C -0.178 4.178 22 C -0.174 4.174 23 C -0.091 4.091 24 H 0.043 0.957 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.634 1.208 -11.035 13.473 hybrid contribution -1.033 -0.501 -2.406 2.666 sum -8.667 0.707 -13.441 16.008 Atomic orbital electron populations 1.22040 0.97196 0.99246 1.01595 1.22234 0.95733 1.01542 0.99572 1.19550 0.95449 0.88600 0.88094 0.95081 1.22064 1.30118 1.18954 0.91319 0.92132 1.25681 0.94906 0.96656 1.01075 1.70793 1.24621 1.25809 1.33927 0.83612 0.75680 0.75694 0.75766 1.21000 1.21508 1.21470 1.65657 1.20962 1.30886 1.05027 1.23291 0.89718 1.01534 0.93053 1.21843 0.92594 0.98359 0.97675 0.91499 1.21923 0.93409 0.96629 0.93738 1.58607 1.12103 1.05983 1.60795 1.21884 0.96149 0.95960 0.93523 1.22808 1.01191 0.96255 0.95892 1.22859 0.99034 0.98226 0.97646 1.22990 0.97710 0.99617 0.97094 1.23094 0.97183 0.96373 0.92453 0.95696 0.90843 0.93294 0.95057 0.91616 0.91832 0.90567 0.91355 0.96085 0.91172 0.85062 0.85254 0.90809 0.91260 0.90424 0.92153 0.91688 0.90100 0.91902 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 7.76 37.16 0.29 -2.74 16 2 C -0.15 -3.48 4.80 -26.73 -0.13 -3.61 16 3 C 0.19 4.78 2.48 -68.87 -0.17 4.61 16 4 H 0.03 0.88 7.61 -51.93 -0.40 0.48 16 5 C -0.59 -16.04 6.50 -34.44 -0.22 -16.26 16 6 H 0.06 1.68 5.66 -52.49 -0.30 1.38 16 7 C 0.02 0.59 5.26 -17.82 -0.09 0.50 16 8 N -0.91 -27.26 13.14 55.43 0.73 -26.53 16 9 Si 1.06 25.42 29.91 -169.99 -5.08 20.33 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.50 -10.96 5.58 -223.57 -1.25 -12.21 16 14 C 0.05 1.04 3.75 -2.00 -0.01 1.03 16 15 C -0.09 -1.35 3.00 -89.58 -0.27 -1.62 16 16 H 0.07 1.06 7.95 -51.93 -0.41 0.64 16 17 C 0.07 0.99 5.05 -3.82 -0.02 0.97 16 18 N -0.85 -10.70 9.42 -10.37 -0.10 -10.80 16 19 C -0.07 -1.11 1.14 -154.30 -0.18 -1.28 16 20 C -0.12 -1.64 7.18 -26.33 -0.19 -1.83 16 21 C -0.14 -1.64 7.94 -25.74 -0.20 -1.84 16 22 C -0.14 -1.71 6.48 -26.33 -0.17 -1.88 16 23 C 0.04 0.68 4.60 -2.54 -0.01 0.67 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 1.72 6.19 -51.93 -0.32 1.39 16 26 H 0.05 0.94 4.03 -51.93 -0.21 0.73 16 27 H 0.03 0.66 6.12 -51.93 -0.32 0.34 16 28 H 0.07 1.68 6.22 -51.93 -0.32 1.35 16 29 H 0.27 8.00 5.75 -40.82 -0.23 7.77 16 30 H 0.08 1.63 3.34 -51.93 -0.17 1.45 16 31 H 0.07 1.53 7.04 -51.93 -0.37 1.16 16 32 H 0.02 0.25 6.41 -51.93 -0.33 -0.08 16 33 H 0.07 1.03 7.35 -51.93 -0.38 0.65 16 34 H 0.34 3.83 8.99 -39.29 -0.35 3.47 16 35 H 0.34 3.48 9.08 -39.29 -0.36 3.13 16 36 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 37 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.06 0.83 8.04 -51.93 -0.42 0.42 16 41 H 0.08 0.92 5.98 -51.93 -0.31 0.61 16 42 H 0.06 1.14 7.90 -51.93 -0.41 0.73 16 43 H 0.06 1.18 3.75 -51.93 -0.19 0.99 16 LS Contribution 303.30 15.07 4.57 4.57 Total: -1.00 -29.25 303.30 -9.22 -38.47 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.71 Total: 9.46 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -1.38 Total: -23.29 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.62 Total: -49.54 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.33 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.25 -9.22 -38.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693684953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.466 kcal (2) G-P(sol) polarization free energy of solvation -29.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds