Wall clock time and date at job start Mon Mar 30 2020 04:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46930 * 2 1 4 4 H 1.08996 * 109.47588 * 56.01396 * 3 2 1 5 5 C 1.50699 * 109.47053 * 176.01693 * 3 2 1 6 6 H 1.08005 * 120.00063 * 116.66689 * 5 3 2 7 7 C 1.37880 * 119.99769 * 296.94532 * 5 3 2 8 8 N 1.31506 * 120.00032 * 359.72595 * 7 5 3 9 9 Si 1.86807 * 119.99700 * 179.72362 * 7 5 3 10 10 H 1.48501 * 109.47260 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46853 * 120.00202 * 9 7 5 12 12 H 1.48501 * 109.47096 * 239.99701 * 9 7 5 13 13 N 1.46906 * 109.47310 * 296.01259 * 3 2 1 14 14 C 1.48648 * 111.00053 * 300.87791 * 13 3 2 15 15 C 1.54627 * 104.64014 * 201.41957 * 14 13 3 16 16 H 1.08998 * 110.39586 * 264.90705 * 15 14 13 17 17 C 1.53007 * 110.39369 * 142.62067 * 15 14 13 18 18 N 1.46898 * 109.47163 * 66.45290 * 17 15 14 19 19 C 1.53354 * 104.67272 * 23.70805 * 15 14 13 20 20 C 1.52800 * 115.62684 * 230.22307 * 19 15 14 21 21 C 1.53959 * 86.77773 * 217.42856 * 20 19 15 22 22 C 1.52791 * 115.65902 * 129.28630 * 19 15 14 23 23 C 1.48783 * 111.00039 * 185.24845 * 13 3 2 24 24 H 1.08999 * 109.47308 * 295.20917 * 1 2 3 25 25 H 1.09008 * 109.47221 * 55.20358 * 1 2 3 26 26 H 1.08993 * 109.47262 * 175.19947 * 1 2 3 27 27 H 1.08997 * 109.46930 * 239.99911 * 2 1 3 28 28 H 1.08998 * 109.46989 * 120.00187 * 2 1 3 29 29 H 0.97000 * 119.99952 * 180.02562 * 8 7 5 30 30 H 1.08999 * 110.39807 * 320.21245 * 14 13 3 31 31 H 1.09001 * 110.40275 * 82.51155 * 14 13 3 32 32 H 1.08995 * 109.47228 * 186.45523 * 17 15 14 33 33 H 1.09001 * 109.46983 * 306.44826 * 17 15 14 34 34 H 1.00901 * 110.99999 * 56.04415 * 18 17 15 35 35 H 1.00898 * 110.99938 * 180.02562 * 18 17 15 36 36 H 1.08996 * 113.66690 * 331.90097 * 20 19 15 37 37 H 1.09004 * 113.66292 * 102.96227 * 20 19 15 38 38 H 1.09005 * 113.58656 * 270.10641 * 21 20 19 39 39 H 1.08998 * 113.65622 * 139.29909 * 21 20 19 40 40 H 1.09001 * 113.65988 * 257.01290 * 22 19 15 41 41 H 1.08999 * 113.66409 * 28.06749 * 22 19 15 42 42 H 1.08999 * 110.45850 * 276.97008 * 23 13 3 43 43 H 1.09003 * 110.45985 * 39.54125 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6195 1.9766 0.8521 5 6 3.5437 1.4437 0.0987 6 1 4.1376 1.8444 -0.7095 7 6 4.1615 0.9279 1.2183 8 7 3.4383 0.4399 2.2023 9 14 6.0257 0.9223 1.3372 10 1 6.6021 1.5226 0.1073 11 1 6.4486 1.7142 2.5202 12 1 6.5085 -0.4749 1.4787 13 7 1.6305 2.1067 -1.2447 14 6 2.1692 1.3924 -2.4318 15 6 2.1508 2.4460 -3.5635 16 1 1.2384 2.3547 -4.1527 17 6 3.3810 2.2877 -4.4594 18 7 3.3042 1.0070 -5.1749 19 6 2.1855 3.7964 -2.8376 20 6 1.1260 4.8079 -3.2725 21 6 2.2070 5.8886 -3.0885 22 6 3.2501 4.7801 -3.3207 23 6 2.2148 3.4718 -1.3378 24 1 -0.3634 0.4377 0.9298 25 1 -0.3634 0.5865 -0.8440 26 1 -0.3633 -1.0240 -0.0860 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8729 0.0774 2.9900 30 1 3.1885 1.0558 -2.2424 31 1 1.5317 0.5461 -2.6877 32 1 3.4135 3.1050 -5.1797 33 1 4.2820 2.3078 -3.8462 34 1 2.4455 0.9373 -5.7003 35 1 4.1062 0.8786 -5.7735 36 1 0.8018 4.6849 -4.3059 37 1 0.2941 4.8978 -2.5739 38 1 2.2354 6.3105 -2.0838 39 1 2.2002 6.6510 -3.8674 40 1 4.1148 4.8479 -2.6606 41 1 3.5238 4.6493 -4.3676 42 1 1.6068 4.1853 -0.7817 43 1 3.2401 3.4735 -0.9676 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693684958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:34 Heat of formation + Delta-G solvation = 18.817148 kcal Electronic energy + Delta-G solvation = -20334.729397 eV Core-core repulsion = 17607.931065 eV Total energy + Delta-G solvation = -2726.798331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.14035 -36.52730 -34.79418 -32.75629 -31.33677 -29.23795 -26.89887 -26.21659 -25.49900 -23.68729 -22.83003 -21.53460 -20.26000 -18.84774 -17.64906 -16.53200 -15.85300 -14.99370 -14.76138 -14.66381 -14.57242 -13.94311 -13.57764 -13.09964 -12.83104 -12.39441 -12.08830 -11.96186 -11.86753 -11.53104 -11.39744 -11.14482 -10.99851 -10.83682 -10.51271 -10.50030 -10.25245 -10.02180 -9.84956 -9.74106 -9.62264 -9.52271 -9.34743 -8.99876 -8.42642 -8.30937 -7.09972 -5.94770 -4.05784 3.28235 3.36939 3.39891 4.43482 4.63666 4.83611 4.93615 4.95792 5.07803 5.30863 5.40779 5.52546 5.59695 5.73744 5.83572 5.90070 5.97868 6.04553 6.13819 6.24803 6.26754 6.37463 6.38821 6.51991 6.54032 6.72126 6.75677 6.81610 6.88741 6.94252 7.09322 7.13918 7.25376 7.29354 7.36997 7.58281 7.67807 7.79684 8.03253 8.21173 8.30766 8.49973 9.05109 9.60324 11.05933 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017798 B = 0.008031 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.795562 B = 3485.495696 C = 3741.614483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C 0.203 3.797 4 H 0.039 0.961 5 C -0.538 4.538 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.512 5.512 14 C 0.059 3.941 15 C -0.079 4.079 16 H 0.065 0.935 17 C 0.073 3.927 18 N -0.847 5.847 19 C -0.074 4.074 20 C -0.124 4.124 21 C -0.140 4.140 22 C -0.137 4.137 23 C 0.060 3.940 24 H 0.038 0.962 25 H 0.050 0.950 26 H 0.024 0.976 27 H 0.034 0.966 28 H 0.084 0.916 29 H 0.260 0.740 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.021 0.979 33 H 0.072 0.928 34 H 0.336 0.664 35 H 0.335 0.665 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 6.017 -11.997 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C 0.096 3.904 4 H 0.057 0.943 5 C -0.577 4.577 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.236 5.236 14 C -0.069 4.069 15 C -0.098 4.098 16 H 0.083 0.917 17 C -0.058 4.058 18 N -0.376 5.376 19 C -0.075 4.075 20 C -0.162 4.162 21 C -0.178 4.178 22 C -0.175 4.175 23 C -0.068 4.068 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.090 0.910 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.671 5.596 -11.048 12.669 hybrid contribution 1.993 0.450 -0.642 2.142 sum -0.678 6.046 -11.690 13.179 Atomic orbital electron populations 1.21730 0.98879 0.98479 1.00624 1.21542 0.92243 0.99226 1.01637 1.19363 0.92955 0.91093 0.86990 0.94268 1.21735 0.92754 1.40166 1.03002 0.92332 1.24906 0.97651 0.95127 0.95758 1.69913 1.34710 1.40543 1.07204 0.86672 0.86563 0.77688 0.77877 1.19948 1.21123 1.21055 1.65782 1.52769 1.01291 1.03725 1.22860 0.99878 0.95104 0.89077 1.21744 0.96424 0.95205 0.96447 0.91651 1.21938 0.99388 0.88590 0.95881 1.58610 1.06914 1.35970 1.36070 1.21916 0.95844 0.92768 0.97013 1.22809 0.96820 0.95838 1.00686 1.22860 0.97243 0.96237 1.01440 1.22982 0.97189 0.96265 1.01025 1.22675 0.99953 0.92744 0.91461 0.94280 0.93139 0.95648 0.94766 0.89753 0.93045 0.92265 0.92051 0.96093 0.90971 0.85241 0.85281 0.91031 0.91293 0.90311 0.92339 0.91468 0.90353 0.92056 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.85 37.16 0.37 -2.57 16 2 C -0.11 -2.61 5.08 -26.73 -0.14 -2.75 16 3 C 0.20 5.05 1.87 -68.86 -0.13 4.92 16 4 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 5 C -0.54 -14.34 6.44 -34.44 -0.22 -14.56 16 6 H 0.06 1.58 5.72 -52.48 -0.30 1.28 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 8 N -0.89 -25.15 11.54 55.43 0.64 -24.51 16 9 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.51 -10.96 4.77 -223.55 -1.07 -12.03 16 14 C 0.06 1.18 4.47 -2.00 -0.01 1.17 16 15 C -0.08 -1.26 3.00 -89.58 -0.27 -1.53 16 16 H 0.07 1.01 7.95 -51.93 -0.41 0.60 16 17 C 0.07 1.03 5.05 -3.82 -0.02 1.01 16 18 N -0.85 -10.92 9.43 -10.37 -0.10 -11.02 16 19 C -0.07 -1.17 1.14 -154.30 -0.18 -1.34 16 20 C -0.12 -1.69 7.18 -26.33 -0.19 -1.88 16 21 C -0.14 -1.76 7.94 -25.74 -0.20 -1.97 16 22 C -0.14 -1.88 6.48 -26.33 -0.17 -2.05 16 23 C 0.06 1.17 5.49 -2.53 -0.01 1.16 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.05 1.03 7.59 -51.92 -0.39 0.63 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.03 0.82 6.72 -51.93 -0.35 0.47 16 28 H 0.08 2.27 6.24 -51.93 -0.32 1.95 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.06 1.35 5.91 -51.93 -0.31 1.04 16 31 H 0.06 1.25 7.59 -51.93 -0.39 0.86 16 32 H 0.02 0.26 6.41 -51.93 -0.33 -0.07 16 33 H 0.07 1.16 7.99 -51.93 -0.41 0.75 16 34 H 0.34 3.79 8.99 -39.29 -0.35 3.43 16 35 H 0.34 3.62 9.08 -39.29 -0.36 3.27 16 36 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 37 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 41 H 0.08 0.98 5.98 -51.93 -0.31 0.66 16 42 H 0.06 1.19 7.90 -51.93 -0.41 0.77 16 43 H 0.06 1.41 5.81 -51.93 -0.30 1.11 16 LS Contribution 319.03 15.07 4.81 4.81 Total: -1.00 -27.71 319.03 -9.47 -37.18 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.47 Total: 7.90 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -1.27 Total: -18.62 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.52 Total: -47.55 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.71 -9.47 -37.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693684958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.001 kcal (2) G-P(sol) polarization free energy of solvation -27.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds