Wall clock time and date at job start Mon Mar 30 2020 03:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46900 * 110.99848 * 2 1 4 4 C 1.50699 * 109.46999 * 73.17059 * 3 2 1 5 5 H 1.08003 * 119.99584 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00103 * 179.97438 * 4 3 2 7 7 N 1.31521 * 120.00097 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 120.00186 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47214 * 89.99917 * 8 6 4 10 10 H 1.48503 * 109.47518 * 210.00000 * 8 6 4 11 11 H 1.48502 * 109.47013 * 330.00125 * 8 6 4 12 12 C 1.46903 * 110.99709 * 236.05227 * 2 1 3 13 13 H 1.08997 * 113.18202 * 66.70485 * 12 2 1 14 14 C 1.50200 * 114.13148 * 293.97015 * 12 2 1 15 15 H 1.08992 * 112.78304 * 168.25802 * 14 12 2 16 16 C 1.51950 * 124.39646 * 26.10710 * 14 12 2 17 17 C 1.54353 * 105.35904 * 202.25726 * 16 14 12 18 18 C 1.52366 * 112.14140 * 54.82555 * 17 16 14 19 19 N 1.47994 * 112.89489 * 307.97327 * 18 17 16 20 20 C 1.44972 * 107.49158 * 57.28925 * 19 18 17 21 21 H 1.08995 * 111.69321 * 54.47080 * 20 19 18 22 22 C 1.50152 * 126.43606 * 197.55085 * 20 19 18 23 23 C 1.53005 * 114.06708 * 255.26719 * 22 20 19 24 24 C 1.52999 * 114.07126 * 27.64264 * 22 20 19 25 25 H 1.09000 * 109.46839 * 178.05987 * 1 2 3 26 26 H 1.08992 * 109.46907 * 298.05677 * 1 2 3 27 27 H 1.08994 * 109.47455 * 58.05758 * 1 2 3 28 28 H 1.09004 * 109.46787 * 193.16705 * 3 2 1 29 29 H 1.08998 * 109.47141 * 313.16972 * 3 2 1 30 30 H 0.96993 * 119.99946 * 179.97438 * 7 6 4 31 31 H 1.09005 * 110.28193 * 83.26197 * 16 14 12 32 32 H 1.09000 * 110.28598 * 321.26261 * 16 14 12 33 33 H 1.08998 * 108.94301 * 175.50621 * 17 16 14 34 34 H 1.08993 * 108.95077 * 294.22590 * 17 16 14 35 35 H 1.08995 * 108.79569 * 68.85443 * 18 17 16 36 36 H 1.08997 * 108.79643 * 187.20703 * 18 17 16 37 37 H 1.00895 * 111.00387 * 295.72311 * 19 18 17 38 38 H 1.09001 * 109.47110 * 72.49697 * 23 22 20 39 39 H 1.08997 * 109.46523 * 192.49407 * 23 22 20 40 40 H 1.08991 * 109.47199 * 312.49427 * 23 22 20 41 41 H 1.09005 * 109.47095 * 40.49723 * 24 22 20 42 42 H 1.08992 * 109.47055 * 160.49660 * 24 22 20 43 43 H 1.09000 * 109.47000 * 280.49847 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7914 1.9878 1.3600 5 1 1.3177 1.4178 2.1455 6 6 2.2095 3.2792 1.6013 7 7 2.0310 3.8173 2.7881 8 14 3.0296 4.2648 0.2428 9 1 1.9963 5.0067 -0.5233 10 1 3.9895 5.2277 0.8401 11 1 3.7549 3.3434 -0.6683 12 6 1.9955 -0.7659 -1.1377 13 1 1.7793 -0.3055 -2.1017 14 6 1.6956 -2.2365 -1.0794 15 1 1.9112 -2.7487 -2.0169 16 6 0.5108 -2.8425 -0.3460 17 6 0.9063 -4.3091 -0.0718 18 6 2.2320 -4.4170 0.6716 19 7 3.3210 -3.6557 0.0200 20 6 2.8906 -2.2746 -0.0755 21 1 2.5951 -1.8767 0.8952 22 6 3.4751 -1.2180 -0.9681 23 6 4.3580 -0.2034 -0.2386 24 6 4.1113 -1.7643 -2.2478 25 1 -0.3633 -1.0271 -0.0348 26 1 -0.3633 0.4833 0.9068 27 1 -0.3634 0.5437 -0.8720 28 1 3.0599 1.3520 -0.2341 29 1 1.4693 1.9626 -0.7495 30 1 2.3255 4.7257 2.9579 31 1 -0.3813 -2.8023 -0.9711 32 1 0.3377 -2.3159 0.5926 33 1 0.1261 -4.7802 0.5260 34 1 0.9909 -4.8365 -1.0219 35 1 2.0978 -4.0400 1.6854 36 1 2.5214 -5.4665 0.7230 37 1 3.5306 -4.0330 -0.8920 38 1 5.2987 -0.6765 0.0428 39 1 4.5590 0.6422 -0.8963 40 1 3.8451 0.1468 0.6570 41 1 3.4891 -2.5636 -2.6504 42 1 4.1945 -0.9635 -2.9826 43 1 5.1036 -2.1548 -2.0221 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693695903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:43 Heat of formation + Delta-G solvation = 63.583534 kcal Electronic energy + Delta-G solvation = -20591.143915 eV Core-core repulsion = 17866.286800 eV Total energy + Delta-G solvation = -2724.857115 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.44368 -36.44082 -34.62459 -32.57721 -31.56899 -29.96738 -27.74407 -27.11691 -26.43908 -23.91449 -23.02806 -21.26487 -20.68762 -19.75304 -18.09329 -16.63638 -16.00934 -15.19670 -14.65850 -14.59748 -14.39418 -13.73952 -13.57249 -13.32021 -13.11361 -12.78418 -12.59375 -12.26285 -12.08597 -11.76962 -11.66476 -11.50740 -11.43079 -11.17836 -11.01032 -10.77691 -10.63262 -10.57923 -10.17970 -9.95980 -9.94435 -9.68986 -9.42321 -9.13006 -8.51763 -7.86168 -7.31678 -6.02644 -3.98586 3.28896 3.37015 3.38501 4.17727 4.43582 4.46648 4.74415 4.88316 4.98229 5.18426 5.20850 5.27612 5.31108 5.44418 5.50331 5.63782 5.72310 5.86674 5.89008 5.93085 5.98846 6.02018 6.06902 6.15408 6.19715 6.27574 6.30540 6.32609 6.43728 6.50005 6.57440 6.71388 6.78511 6.91612 7.01613 7.09881 7.25510 7.63022 7.68073 7.92505 8.07736 8.69460 9.07322 9.59909 11.10736 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.027868 B = 0.007191 C = 0.006557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.489317 B = 3892.981609 C = 4269.195395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.506 5.506 3 C 0.143 3.857 4 C -0.502 4.502 5 H 0.079 0.921 6 C 0.068 3.932 7 N -0.902 5.902 8 Si 0.871 3.129 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.266 1.266 12 C 0.083 3.917 13 H 0.037 0.963 14 C -0.178 4.178 15 H 0.085 0.915 16 C -0.104 4.104 17 C -0.151 4.151 18 C 0.057 3.943 19 N -0.663 5.663 20 C 0.079 3.921 21 H 0.124 0.876 22 C -0.061 4.061 23 C -0.142 4.142 24 C -0.128 4.128 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.009 0.991 28 H 0.053 0.947 29 H -0.021 1.021 30 H 0.263 0.737 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.329 0.671 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.095 0.905 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.493 -14.457 -9.091 17.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.229 5.229 3 C 0.017 3.983 4 C -0.541 4.541 5 H 0.097 0.903 6 C -0.133 4.133 7 N -0.541 5.541 8 Si 0.698 3.302 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.191 1.191 12 C -0.027 4.027 13 H 0.055 0.945 14 C -0.198 4.198 15 H 0.103 0.897 16 C -0.141 4.141 17 C -0.190 4.190 18 C -0.072 4.072 19 N -0.290 5.290 20 C -0.032 4.032 21 H 0.141 0.859 22 C -0.062 4.062 23 C -0.199 4.199 24 C -0.186 4.186 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.027 0.973 28 H 0.070 0.930 29 H -0.004 1.004 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.146 0.854 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.104 -14.462 -7.930 16.530 hybrid contribution -0.690 1.123 -2.305 2.656 sum 0.414 -13.339 -10.235 16.818 Atomic orbital electron populations 1.22600 0.88346 1.00850 1.00898 1.61853 1.06905 1.16319 1.37872 1.20657 0.96690 0.83610 0.97367 1.21007 1.39021 0.97979 0.96075 0.90262 1.24869 0.95758 0.97454 0.95193 1.69891 1.47921 1.15038 1.21241 0.86931 0.79922 0.80504 0.82818 1.20540 1.21200 1.19082 1.22175 0.94796 0.92671 0.93097 0.94528 1.23297 0.99936 0.96774 0.99813 0.89701 1.21665 0.96912 0.94494 1.01067 1.22197 0.98877 0.97403 1.00523 1.21977 0.88647 0.97796 0.98810 1.60990 1.38783 1.02892 1.26307 1.22973 0.92888 0.88172 0.99132 0.85877 1.21606 0.94289 0.95345 0.94928 1.21979 0.98720 0.97208 1.01965 1.21622 1.00470 1.00363 0.96144 0.91504 0.90654 0.97268 0.92972 1.00351 0.92754 0.92870 0.89594 0.91845 0.93008 0.90962 0.91500 0.85415 0.93551 0.93279 0.88623 0.92796 0.92599 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 8.87 60.07 0.53 0.93 16 2 N -0.51 -10.14 3.23 -240.74 -0.78 -10.92 16 3 C 0.14 3.37 2.79 -4.98 -0.01 3.36 16 4 C -0.50 -14.00 9.20 -34.44 -0.32 -14.32 16 5 H 0.08 2.42 7.82 -52.48 -0.41 2.01 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 8 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 12 C 0.08 1.40 3.00 -71.31 -0.21 1.19 16 13 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 14 C -0.18 -2.50 2.96 -94.16 -0.28 -2.78 16 15 H 0.08 1.11 6.10 -51.93 -0.32 0.79 16 16 C -0.10 -1.36 4.15 -26.56 -0.11 -1.48 16 17 C -0.15 -1.66 5.92 -26.35 -0.16 -1.82 16 18 C 0.06 0.67 6.40 -3.55 -0.02 0.65 16 19 N -0.66 -8.71 7.13 -111.23 -0.79 -9.50 16 20 C 0.08 1.19 2.89 -72.11 -0.21 0.98 16 21 H 0.12 2.27 7.14 -51.93 -0.37 1.90 16 22 C -0.06 -0.94 1.46 -157.80 -0.23 -1.17 16 23 C -0.14 -2.52 7.45 37.16 0.28 -2.24 16 24 C -0.13 -1.62 8.62 37.16 0.32 -1.30 16 25 H 0.07 1.07 3.91 -51.93 -0.20 0.86 16 26 H 0.07 1.55 7.42 -51.93 -0.39 1.17 16 27 H 0.01 0.17 8.07 -51.93 -0.42 -0.25 16 28 H 0.05 1.23 3.10 -51.93 -0.16 1.07 16 29 H -0.02 -0.52 7.41 -51.93 -0.38 -0.91 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.05 0.67 7.92 -51.93 -0.41 0.25 16 32 H 0.09 1.28 6.13 -51.93 -0.32 0.96 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.33 3.85 7.91 -39.29 -0.31 3.54 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.88 7.33 -51.93 -0.38 0.50 16 40 H 0.10 2.01 5.98 -51.93 -0.31 1.70 16 41 H 0.05 0.61 5.81 -51.93 -0.30 0.30 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 307.19 15.07 4.63 4.63 Total: -1.00 -28.92 307.19 -8.59 -37.51 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -7.23 Total: 4.34 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -0.52 Total: -16.14 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.80 Total: -47.17 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.92 -8.59 -37.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693695903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.093 kcal (2) G-P(sol) polarization free energy of solvation -28.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds