Wall clock time and date at job start Mon Mar 30 2020 03:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46900 * 110.99848 * 2 1 4 4 C 1.50699 * 109.46999 * 73.17059 * 3 2 1 5 5 H 1.08003 * 119.99584 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00103 * 179.97438 * 4 3 2 7 7 N 1.31521 * 120.00097 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 120.00186 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47214 * 89.99917 * 8 6 4 10 10 H 1.48503 * 109.47518 * 210.00000 * 8 6 4 11 11 H 1.48502 * 109.47013 * 330.00125 * 8 6 4 12 12 C 1.46903 * 110.99709 * 236.05227 * 2 1 3 13 13 H 1.08997 * 113.18202 * 66.70485 * 12 2 1 14 14 C 1.50200 * 114.13148 * 293.97015 * 12 2 1 15 15 H 1.08992 * 112.78304 * 168.25802 * 14 12 2 16 16 C 1.51950 * 124.39646 * 26.10710 * 14 12 2 17 17 C 1.54353 * 105.35904 * 202.25726 * 16 14 12 18 18 C 1.52366 * 112.14140 * 54.82555 * 17 16 14 19 19 N 1.47994 * 112.89489 * 307.97327 * 18 17 16 20 20 C 1.44972 * 107.49158 * 57.28925 * 19 18 17 21 21 H 1.08995 * 111.69321 * 54.47080 * 20 19 18 22 22 C 1.50152 * 126.43606 * 197.55085 * 20 19 18 23 23 C 1.53005 * 114.06708 * 255.26719 * 22 20 19 24 24 C 1.52999 * 114.07126 * 27.64264 * 22 20 19 25 25 H 1.09000 * 109.46839 * 178.05987 * 1 2 3 26 26 H 1.08992 * 109.46907 * 298.05677 * 1 2 3 27 27 H 1.08994 * 109.47455 * 58.05758 * 1 2 3 28 28 H 1.09004 * 109.46787 * 193.16705 * 3 2 1 29 29 H 1.08998 * 109.47141 * 313.16972 * 3 2 1 30 30 H 0.96993 * 119.99946 * 179.97438 * 7 6 4 31 31 H 1.09005 * 110.28193 * 83.26197 * 16 14 12 32 32 H 1.09000 * 110.28598 * 321.26261 * 16 14 12 33 33 H 1.08998 * 108.94301 * 175.50621 * 17 16 14 34 34 H 1.08993 * 108.95077 * 294.22590 * 17 16 14 35 35 H 1.08995 * 108.79569 * 68.85443 * 18 17 16 36 36 H 1.08997 * 108.79643 * 187.20703 * 18 17 16 37 37 H 1.00895 * 111.00387 * 295.72311 * 19 18 17 38 38 H 1.09001 * 109.47110 * 72.49697 * 23 22 20 39 39 H 1.08997 * 109.46523 * 192.49407 * 23 22 20 40 40 H 1.08991 * 109.47199 * 312.49427 * 23 22 20 41 41 H 1.09005 * 109.47095 * 40.49723 * 24 22 20 42 42 H 1.08992 * 109.47055 * 160.49660 * 24 22 20 43 43 H 1.09000 * 109.47000 * 280.49847 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7914 1.9878 1.3600 5 1 1.3177 1.4178 2.1455 6 6 2.2095 3.2792 1.6013 7 7 2.0310 3.8173 2.7881 8 14 3.0296 4.2648 0.2428 9 1 1.9963 5.0067 -0.5233 10 1 3.9895 5.2277 0.8401 11 1 3.7549 3.3434 -0.6683 12 6 1.9955 -0.7659 -1.1377 13 1 1.7793 -0.3055 -2.1017 14 6 1.6956 -2.2365 -1.0794 15 1 1.9112 -2.7487 -2.0169 16 6 0.5108 -2.8425 -0.3460 17 6 0.9063 -4.3091 -0.0718 18 6 2.2320 -4.4170 0.6716 19 7 3.3210 -3.6557 0.0200 20 6 2.8906 -2.2746 -0.0755 21 1 2.5951 -1.8767 0.8952 22 6 3.4751 -1.2180 -0.9681 23 6 4.3580 -0.2034 -0.2386 24 6 4.1113 -1.7643 -2.2478 25 1 -0.3633 -1.0271 -0.0348 26 1 -0.3633 0.4833 0.9068 27 1 -0.3634 0.5437 -0.8720 28 1 3.0599 1.3520 -0.2341 29 1 1.4693 1.9626 -0.7495 30 1 2.3255 4.7257 2.9579 31 1 -0.3813 -2.8023 -0.9711 32 1 0.3377 -2.3159 0.5926 33 1 0.1261 -4.7802 0.5260 34 1 0.9909 -4.8365 -1.0219 35 1 2.0978 -4.0400 1.6854 36 1 2.5214 -5.4665 0.7230 37 1 3.5306 -4.0330 -0.8920 38 1 5.2987 -0.6765 0.0428 39 1 4.5590 0.6422 -0.8963 40 1 3.8451 0.1468 0.6570 41 1 3.4891 -2.5636 -2.6504 42 1 4.1945 -0.9635 -2.9826 43 1 5.1036 -2.1548 -2.0221 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693695903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:42 Heat of formation + Delta-G solvation = 43.534594 kcal Electronic energy + Delta-G solvation = -20592.013303 eV Core-core repulsion = 17866.286800 eV Total energy + Delta-G solvation = -2725.726502 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.67110 -37.78470 -36.00399 -34.56475 -32.89748 -31.23016 -29.40071 -28.49724 -27.72648 -25.46494 -24.26218 -22.82961 -21.96992 -21.00379 -19.47680 -18.69269 -17.29005 -16.52989 -16.27714 -15.97246 -15.63918 -15.22205 -15.08158 -14.64297 -14.32194 -14.18624 -14.04663 -13.83162 -13.38348 -13.31590 -12.91109 -12.87150 -12.71478 -12.57380 -12.47554 -12.37520 -11.96142 -11.90092 -11.70753 -11.61247 -11.35159 -11.18513 -10.94880 -10.71403 -10.68620 -9.06941 -8.78259 -8.27183 -6.28135 1.31530 1.33166 1.43807 2.33526 3.04792 3.09435 3.10978 3.54800 3.60051 3.94063 4.06123 4.18472 4.22603 4.34472 4.40812 4.47946 4.58783 4.61350 4.62639 4.74091 4.81618 4.87224 4.91688 4.98220 5.00321 5.02917 5.07964 5.13886 5.14853 5.19150 5.21382 5.25764 5.34624 5.42512 5.54893 5.61989 5.69477 6.02397 6.15128 6.40962 6.69353 6.70233 6.77484 7.34466 8.89894 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.027868 B = 0.007191 C = 0.006557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.489317 B = 3892.981609 C = 4269.195395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.516 5.516 3 C 0.155 3.845 4 C -0.504 4.504 5 H 0.034 0.966 6 C 0.009 3.991 7 N -0.950 5.950 8 Si 0.939 3.061 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.247 1.247 12 C 0.068 3.932 13 H 0.037 0.963 14 C -0.161 4.161 15 H 0.112 0.888 16 C -0.108 4.108 17 C -0.141 4.141 18 C 0.056 3.944 19 N -0.667 5.667 20 C 0.084 3.916 21 H 0.081 0.919 22 C -0.058 4.058 23 C -0.139 4.139 24 C -0.121 4.121 25 H 0.097 0.903 26 H 0.043 0.957 27 H 0.010 0.990 28 H 0.060 0.940 29 H -0.029 1.029 30 H 0.265 0.735 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.343 0.657 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.280 -16.570 -12.189 20.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.240 5.240 3 C 0.028 3.972 4 C -0.543 4.543 5 H 0.052 0.948 6 C -0.188 4.188 7 N -0.591 5.591 8 Si 0.763 3.237 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.170 1.170 12 C -0.042 4.042 13 H 0.055 0.945 14 C -0.181 4.181 15 H 0.129 0.871 16 C -0.145 4.145 17 C -0.181 4.181 18 C -0.073 4.073 19 N -0.295 5.295 20 C -0.027 4.027 21 H 0.099 0.901 22 C -0.059 4.059 23 C -0.197 4.197 24 C -0.179 4.179 25 H 0.116 0.884 26 H 0.062 0.938 27 H 0.029 0.971 28 H 0.077 0.923 29 H -0.011 1.011 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.162 0.838 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.886 -16.608 -11.042 20.033 hybrid contribution -0.976 1.703 -1.226 2.314 sum 0.910 -14.905 -12.268 19.326 Atomic orbital electron populations 1.22575 0.87876 1.02472 0.99288 1.61693 1.07474 1.14442 1.40344 1.20399 0.97101 0.85402 0.94255 1.21219 1.37995 0.97953 0.97098 0.94758 1.25766 0.96571 0.98723 0.97752 1.70050 1.49662 1.15672 1.23720 0.85837 0.79109 0.79013 0.79788 1.19738 1.20628 1.17019 1.22314 0.96381 0.94001 0.91495 0.94500 1.23272 0.99862 0.94437 1.00505 0.87055 1.21652 0.97159 0.95870 0.99836 1.22110 0.98596 0.95738 1.01616 1.22027 0.88872 0.98658 0.97753 1.60902 1.39510 1.01727 1.27316 1.22552 0.93683 0.89132 0.97327 0.90060 1.21718 0.93003 0.94758 0.96460 1.21872 0.99375 0.97974 1.00431 1.21600 1.01105 1.00996 0.94166 0.88442 0.93817 0.97119 0.92268 1.01092 0.92588 0.91663 0.92259 0.90667 0.90964 0.93046 0.89124 0.83837 0.92251 0.93623 0.92715 0.90689 0.92189 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 8.87 127.69 1.13 2.12 16 2 N -0.52 -21.18 3.23 -915.55 -2.96 -24.14 16 3 C 0.16 7.51 2.79 85.56 0.24 7.75 16 4 C -0.50 -29.57 9.20 25.60 0.24 -29.33 16 5 H 0.03 2.26 7.82 -2.91 -0.02 2.23 16 6 C 0.01 0.51 5.47 84.65 0.46 0.98 16 7 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 8 Si 0.94 44.88 27.47 68.60 1.88 46.77 16 9 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 12 C 0.07 2.21 3.00 42.58 0.13 2.33 16 13 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 14 C -0.16 -4.09 2.96 -13.08 -0.04 -4.13 16 15 H 0.11 2.34 6.10 -2.39 -0.01 2.33 16 16 C -0.11 -2.59 4.15 30.71 0.13 -2.46 16 17 C -0.14 -2.64 5.92 30.84 0.18 -2.46 16 18 C 0.06 1.17 6.40 85.88 0.55 1.72 16 19 N -0.67 -15.77 7.13 -505.81 -3.60 -19.38 16 20 C 0.08 2.43 2.89 43.10 0.12 2.56 16 21 H 0.08 3.09 7.14 -2.39 -0.02 3.07 16 22 C -0.06 -1.71 1.46 -54.31 -0.08 -1.79 16 23 C -0.14 -4.90 7.45 71.98 0.54 -4.36 16 24 C -0.12 -2.59 8.62 71.98 0.62 -1.97 16 25 H 0.10 3.11 3.91 -2.39 -0.01 3.10 16 26 H 0.04 1.92 7.42 -2.39 -0.02 1.90 16 27 H 0.01 0.39 8.07 -2.39 -0.02 0.37 16 28 H 0.06 2.80 3.10 -2.38 -0.01 2.79 16 29 H -0.03 -1.41 7.41 -2.39 -0.02 -1.43 16 30 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 31 H 0.06 1.43 7.92 -2.38 -0.02 1.41 16 32 H 0.06 1.75 6.13 -2.39 -0.01 1.74 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 1.28 8.12 -2.39 -0.02 1.26 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.34 6.58 7.91 -89.70 -0.71 5.87 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.04 1.60 7.33 -2.39 -0.02 1.58 16 40 H 0.05 2.37 5.98 -2.39 -0.01 2.36 16 41 H 0.07 1.29 5.81 -2.38 -0.01 1.28 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -66.18 307.19 0.07 -66.12 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.22 Total: 19.79 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 4.22 Total: -29.06 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -6.26 Total: -103.62 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -66.18 0.07 -66.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693695903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.651 kcal (2) G-P(sol) polarization free energy of solvation -66.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds