Wall clock time and date at job start Mon Mar 30 2020 03:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46892 * 111.00305 * 2 1 4 4 C 1.50694 * 109.47383 * 66.04629 * 3 2 1 5 5 H 1.08001 * 120.00124 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00102 * 179.72125 * 4 3 2 7 7 N 1.31507 * 120.00140 * 0.27958 * 6 4 3 8 8 Si 1.86806 * 119.99790 * 180.27679 * 6 4 3 9 9 H 1.48501 * 109.47124 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46676 * 120.00523 * 8 6 4 11 11 H 1.48497 * 109.47009 * 240.00302 * 8 6 4 12 12 C 1.46904 * 110.99731 * 236.04385 * 2 1 3 13 13 H 1.09005 * 113.17839 * 61.64402 * 12 2 1 14 14 C 1.50528 * 114.06363 * 289.04826 * 12 2 1 15 15 H 1.09002 * 113.09583 * 324.09063 * 14 12 2 16 16 C 1.52133 * 123.59497 * 106.69999 * 14 12 2 17 17 C 1.54349 * 104.79294 * 158.05743 * 16 14 12 18 18 C 1.52367 * 112.14743 * 304.73955 * 17 16 14 19 19 N 1.47993 * 112.89127 * 52.02139 * 18 17 16 20 20 C 1.44972 * 107.49161 * 302.71528 * 19 18 17 21 21 H 1.09002 * 111.68316 * 305.54392 * 20 19 18 22 22 C 1.50140 * 126.44534 * 162.46518 * 20 19 18 23 23 C 1.53000 * 114.07165 * 105.40541 * 22 20 19 24 24 C 1.53004 * 114.22445 * 333.04474 * 22 20 19 25 25 H 1.08996 * 109.47417 * 55.05339 * 1 2 3 26 26 H 1.08999 * 109.47640 * 175.05664 * 1 2 3 27 27 H 1.09005 * 109.46628 * 295.05791 * 1 2 3 28 28 H 1.09003 * 109.47187 * 306.04655 * 3 2 1 29 29 H 1.09000 * 109.47131 * 186.04881 * 3 2 1 30 30 H 0.97001 * 120.00182 * 179.97438 * 7 6 4 31 31 H 1.08998 * 110.80581 * 39.11581 * 16 14 12 32 32 H 1.09005 * 110.31060 * 276.74444 * 16 14 12 33 33 H 1.09002 * 108.94819 * 184.04912 * 17 16 14 34 34 H 1.09004 * 108.87619 * 65.37322 * 17 16 14 35 35 H 1.09003 * 108.79616 * 291.14388 * 18 17 16 36 36 H 1.08994 * 108.79734 * 172.90600 * 18 17 16 37 37 H 1.00894 * 111.00059 * 64.28341 * 19 18 17 38 38 H 1.08994 * 109.46773 * 154.51491 * 23 22 20 39 39 H 1.09002 * 109.47072 * 274.51304 * 23 22 20 40 40 H 1.08994 * 109.47403 * 34.50932 * 23 22 20 41 41 H 1.09007 * 109.46997 * 331.35118 * 24 22 20 42 42 H 1.08997 * 109.47032 * 91.34587 * 24 22 20 43 43 H 1.09001 * 109.47094 * 211.35159 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0747 1.5112 2.0488 6 6 2.0324 3.3473 1.5309 7 7 2.7175 3.9997 0.6175 8 14 1.5947 4.1823 3.1437 9 1 0.8263 3.2401 3.9963 10 1 2.8395 4.5834 3.8471 11 1 0.7708 5.3871 2.8696 12 6 1.9954 -0.7661 -1.1376 13 1 1.7048 -0.3536 -2.1039 14 6 1.7965 -2.2535 -1.0206 15 1 1.8924 -2.6186 0.0020 16 6 0.7786 -3.0337 -1.8388 17 6 1.2931 -4.4888 -1.8243 18 6 2.7260 -4.5965 -2.3312 19 7 3.6511 -3.6684 -1.6435 20 6 3.1360 -2.3255 -1.8251 21 1 2.9808 -2.0927 -2.8786 22 6 3.5087 -1.1114 -1.0243 23 6 4.4283 -0.1358 -1.7614 24 6 3.9739 -1.4178 0.4008 25 1 -0.3634 0.5886 -0.8423 26 1 -0.3634 -1.0238 -0.0886 27 1 -0.3633 0.4353 0.9310 28 1 1.5611 1.9273 -0.8309 29 1 3.0797 1.3442 -0.1083 30 1 2.9953 4.9146 0.7809 31 1 0.7345 -2.6587 -2.8613 32 1 -0.2053 -2.9762 -1.3732 33 1 0.6474 -5.0989 -2.4560 34 1 1.2496 -4.8681 -0.8033 35 1 2.7381 -4.3776 -3.3990 36 1 3.0761 -5.6176 -2.1803 37 1 3.7298 -3.8962 -0.6638 38 1 4.2964 0.8663 -1.3536 39 1 5.4652 -0.4466 -1.6334 40 1 4.1786 -0.1322 -2.8224 41 1 3.4975 -2.3342 0.7493 42 1 5.0564 -1.5447 0.4102 43 1 3.6990 -0.5928 1.0579 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693695905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:48 Heat of formation + Delta-G solvation = 37.802091 kcal Electronic energy + Delta-G solvation = -20253.181805 eV Core-core repulsion = 17527.206722 eV Total energy + Delta-G solvation = -2725.975082 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.22927 -36.47903 -34.44807 -32.46933 -31.64722 -29.78820 -27.08312 -27.02395 -26.14715 -24.40293 -22.90820 -21.51305 -20.23789 -19.87199 -18.16264 -16.29772 -15.69950 -15.29362 -14.81289 -14.52810 -14.34321 -13.72526 -13.60502 -13.26062 -12.92618 -12.62205 -12.48278 -12.08965 -11.95041 -11.54913 -11.53636 -11.39508 -11.31250 -11.23292 -10.98147 -10.83916 -10.70776 -10.55927 -10.35916 -10.30607 -9.91042 -9.82220 -9.35782 -9.05418 -8.39247 -7.89824 -7.18716 -6.00021 -4.00487 3.31743 3.39405 3.43972 4.05062 4.44736 4.68985 4.79345 4.93114 4.99906 5.09822 5.21288 5.28256 5.35164 5.42068 5.59921 5.69290 5.70805 5.83913 5.88868 5.91814 5.99203 6.06085 6.08631 6.22459 6.27106 6.30302 6.38182 6.41888 6.45305 6.61194 6.66417 6.79468 6.82237 7.00012 7.13420 7.40605 7.43715 7.52325 7.85383 8.16630 8.26619 8.62147 9.07944 9.63556 11.10792 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034584 B = 0.005905 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.438635 B = 4740.446120 C = 5110.739145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.524 5.524 3 C 0.190 3.810 4 C -0.504 4.504 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.081 3.919 13 H 0.053 0.947 14 C -0.160 4.160 15 H 0.101 0.899 16 C -0.104 4.104 17 C -0.151 4.151 18 C 0.056 3.944 19 N -0.660 5.660 20 C 0.057 3.943 21 H 0.093 0.907 22 C -0.044 4.044 23 C -0.140 4.140 24 C -0.117 4.117 25 H 0.009 0.991 26 H 0.042 0.958 27 H 0.069 0.931 28 H -0.015 1.015 29 H 0.040 0.960 30 H 0.260 0.740 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.338 0.662 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 -14.596 -5.273 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.248 5.248 3 C 0.065 3.935 4 C -0.543 4.543 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.029 4.029 13 H 0.071 0.929 14 C -0.181 4.181 15 H 0.119 0.881 16 C -0.142 4.142 17 C -0.190 4.190 18 C -0.073 4.073 19 N -0.287 5.287 20 C -0.054 4.054 21 H 0.111 0.889 22 C -0.045 4.045 23 C -0.197 4.197 24 C -0.174 4.174 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.003 0.997 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.156 0.844 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.232 -14.654 -5.413 15.623 hybrid contribution -1.449 1.044 0.591 1.881 sum -1.217 -13.610 -4.821 14.490 Atomic orbital electron populations 1.22121 0.89270 0.98555 1.00749 1.62317 1.06385 1.17741 1.38322 1.19810 0.96023 0.81547 0.96162 1.21219 1.34390 0.96966 1.01732 0.92011 1.24967 0.95398 0.97385 0.96820 1.69962 1.38525 1.11422 1.33928 0.86501 0.78115 0.79336 0.83821 1.19745 1.21056 1.21218 1.22700 0.94598 0.92183 0.93449 0.92925 1.23540 0.98101 0.96551 0.99872 0.88116 1.21560 0.98590 0.94423 0.99639 1.22187 0.98008 0.97296 1.01558 1.21996 0.89758 0.96431 0.99138 1.60940 1.47211 1.02075 1.18503 1.22931 0.94156 0.89616 0.98740 0.88908 1.21477 0.94332 0.92906 0.95768 1.21845 0.98539 1.00300 0.99023 1.21458 0.99094 1.02235 0.94616 0.97211 0.93932 0.91269 0.99673 0.94190 0.93075 0.92126 0.92268 0.91972 0.92364 0.91510 0.91231 0.84402 0.90892 0.92942 0.93425 0.93436 0.93471 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 9.27 60.06 0.56 1.38 16 2 N -0.52 -10.98 3.84 -240.57 -0.92 -11.91 16 3 C 0.19 4.83 4.35 -4.98 -0.02 4.80 16 4 C -0.50 -14.00 8.58 -34.44 -0.30 -14.29 16 5 H 0.06 1.71 7.10 -52.49 -0.37 1.34 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 8 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.08 1.43 2.35 -71.17 -0.17 1.26 16 13 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 14 C -0.16 -2.33 2.05 -93.13 -0.19 -2.52 16 15 H 0.10 1.57 6.28 -51.93 -0.33 1.24 16 16 C -0.10 -1.31 6.19 -26.47 -0.16 -1.47 16 17 C -0.15 -1.57 5.90 -26.35 -0.16 -1.73 16 18 C 0.06 0.59 6.40 -3.55 -0.02 0.57 16 19 N -0.66 -8.25 7.12 -111.06 -0.79 -9.04 16 20 C 0.06 0.80 2.95 -71.96 -0.21 0.59 16 21 H 0.09 1.35 7.71 -51.93 -0.40 0.95 16 22 C -0.04 -0.71 0.89 -157.20 -0.14 -0.85 16 23 C -0.14 -2.33 9.17 37.16 0.34 -1.99 16 24 C -0.12 -1.92 8.45 37.16 0.31 -1.60 16 25 H 0.01 0.19 8.08 -51.93 -0.42 -0.23 16 26 H 0.04 0.72 7.25 -51.93 -0.38 0.35 16 27 H 0.07 1.44 7.00 -51.93 -0.36 1.08 16 28 H -0.01 -0.41 8.07 -51.93 -0.42 -0.83 16 29 H 0.04 1.07 5.20 -51.93 -0.27 0.80 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.06 0.76 8.02 -51.93 -0.42 0.34 16 32 H 0.06 0.75 7.93 -51.93 -0.41 0.34 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.34 4.10 7.51 -39.29 -0.30 3.81 16 38 H 0.07 1.43 6.11 -51.93 -0.32 1.11 16 39 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 40 H 0.05 0.73 7.91 -51.93 -0.41 0.32 16 41 H 0.05 0.71 5.52 -51.93 -0.29 0.42 16 42 H 0.05 0.71 8.05 -51.93 -0.42 0.29 16 43 H 0.08 1.65 7.16 -51.93 -0.37 1.28 16 LS Contribution 319.05 15.07 4.81 4.81 Total: -1.00 -28.42 319.05 -8.99 -37.41 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.54 Total: 2.33 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -0.25 Total: -14.40 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.98 Total: -46.74 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.42 -8.99 -37.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693695905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.212 kcal (2) G-P(sol) polarization free energy of solvation -28.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds