Wall clock time and date at job start Mon Mar 30 2020 03:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.48529 * 111.00045 * 2 1 4 4 C 1.54936 * 103.22586 * 200.28114 * 3 2 1 5 5 H 1.09005 * 110.72075 * 279.05181 * 4 3 2 6 6 N 1.46903 * 110.88206 * 155.84299 * 4 3 2 7 7 C 1.46895 * 111.00070 * 88.95262 * 6 4 3 8 8 C 1.52998 * 109.47364 * 185.38764 * 7 6 4 9 9 C 1.50706 * 115.54973 * 39.53261 * 8 7 6 10 10 H 1.08004 * 120.00082 * 264.87570 * 9 8 7 11 11 C 1.37876 * 119.99697 * 84.87237 * 9 8 7 12 12 N 1.31509 * 120.00090 * 353.33619 * 11 9 8 13 13 Si 1.86798 * 119.99611 * 173.34055 * 11 9 8 14 14 H 1.48507 * 109.47446 * 89.99956 * 13 11 9 15 15 H 1.48510 * 109.47148 * 209.99565 * 13 11 9 16 16 H 1.48497 * 109.47661 * 330.00006 * 13 11 9 17 17 C 1.53000 * 117.50177 * 253.83090 * 8 7 6 18 18 C 1.52995 * 117.50384 * 185.20422 * 8 7 6 19 19 C 1.54600 * 102.92327 * 37.41044 * 4 3 2 20 20 C 1.47902 * 111.00043 * 242.59931 * 2 1 3 21 21 C 1.53003 * 109.91550 * 26.49409 * 20 2 1 22 22 C 1.52998 * 109.91593 * 265.20028 * 20 2 1 23 23 H 1.08992 * 109.47130 * 177.39911 * 1 2 3 24 24 H 1.09004 * 109.46918 * 297.39934 * 1 2 3 25 25 H 1.08998 * 109.46821 * 57.39680 * 1 2 3 26 26 H 1.08997 * 110.67375 * 81.84538 * 3 2 1 27 27 H 1.09003 * 110.67062 * 318.71110 * 3 2 1 28 28 H 1.00896 * 111.00365 * 212.91309 * 6 4 3 29 29 H 1.09000 * 109.47500 * 305.38674 * 7 6 4 30 30 H 1.09000 * 109.46956 * 65.39133 * 7 6 4 31 31 H 0.97008 * 120.00306 * 180.02562 * 12 11 9 32 32 H 1.09005 * 117.49519 * 359.97438 * 17 8 7 33 33 H 1.09000 * 117.50419 * 145.01835 * 17 8 7 34 34 H 1.08998 * 117.50189 * 214.97656 * 18 8 7 35 35 H 1.09000 * 117.49725 * 359.97438 * 18 8 7 36 36 H 1.08995 * 110.30348 * 96.96044 * 19 4 3 37 37 H 1.08999 * 110.30456 * 219.02889 * 19 4 3 38 38 H 1.08992 * 109.47329 * 177.59150 * 21 20 2 39 39 H 1.09008 * 109.47189 * 297.58898 * 21 20 2 40 40 H 1.09001 * 109.47113 * 57.58799 * 21 20 2 41 41 H 1.08993 * 109.47262 * 302.40498 * 22 20 2 42 42 H 1.09003 * 109.47341 * 62.41089 * 22 20 2 43 43 H 1.08999 * 109.46801 * 182.40798 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3866 0.0000 4 6 3.4492 1.2106 -0.5228 5 1 4.1116 0.8835 0.2788 6 7 3.9427 2.4553 -1.1271 7 6 4.5859 3.3102 -0.1205 8 6 4.9657 4.6491 -0.7560 9 6 3.9597 5.2182 -1.7231 10 1 4.0667 5.0373 -2.7824 11 6 2.9026 5.9697 -1.2553 12 7 2.6968 6.0813 0.0387 13 14 1.7627 6.8294 -2.4599 14 1 0.6400 5.9233 -2.8119 15 1 1.2246 8.0652 -1.8364 16 1 2.5171 7.1832 -3.6891 17 6 6.4467 4.8971 -1.0493 18 6 5.7600 5.6375 0.1001 19 6 3.2983 0.1052 -1.5931 20 6 1.9991 -0.6354 -1.2259 21 6 0.9840 -0.5020 -2.3628 22 6 2.2983 -2.1121 -0.9599 23 1 -0.3633 -1.0265 -0.0466 24 1 -0.3633 0.4729 0.9124 25 1 -0.3633 0.5537 -0.8657 26 1 2.0042 1.7977 1.0095 27 1 1.4239 2.0205 -0.6730 28 1 4.5715 2.2615 -1.8919 29 1 3.8950 3.4828 0.7048 30 1 5.4836 2.8182 0.2540 31 1 1.9528 6.6097 0.3678 32 1 7.1506 4.1065 -0.7891 33 1 6.6937 5.4719 -1.9419 34 1 5.5552 6.6994 -0.0363 35 1 6.0116 5.3341 1.1164 36 1 3.2137 0.5484 -2.5852 37 1 4.1479 -0.5766 -1.5551 38 1 1.3990 -0.9344 -3.2731 39 1 0.0677 -1.0285 -2.0955 40 1 0.7618 0.5520 -2.5297 41 1 3.0055 -2.1967 -0.1349 42 1 1.3743 -2.6292 -0.7008 43 1 2.7281 -2.5626 -1.8545 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694151846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:58 Heat of formation + Delta-G solvation = 33.161888 kcal Electronic energy + Delta-G solvation = -19745.813421 eV Core-core repulsion = 17019.637124 eV Total energy + Delta-G solvation = -2726.176297 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.62742 -36.84477 -34.31762 -32.16577 -31.75319 -29.89711 -27.31454 -25.76197 -25.38434 -24.49477 -23.35251 -21.05304 -20.08627 -18.98083 -18.58097 -16.09556 -15.48915 -15.43509 -14.62558 -14.49434 -14.20318 -13.96275 -13.45039 -13.15502 -12.98354 -12.80027 -12.50321 -12.26008 -11.82918 -11.60421 -11.57579 -11.35102 -11.12355 -10.93517 -10.87395 -10.70175 -10.57263 -10.50274 -10.39691 -10.23810 -10.03780 -9.37365 -8.74715 -8.26600 -8.15859 -7.96997 -7.39345 -5.86985 -3.86778 3.37901 3.44295 3.47484 4.14850 4.53748 4.77408 4.89574 5.01956 5.15270 5.33828 5.41361 5.46476 5.54539 5.58584 5.64895 5.67700 5.71182 5.84484 5.87360 5.98023 6.07923 6.11338 6.17008 6.20029 6.28047 6.32427 6.47081 6.48947 6.49794 6.58465 6.67852 6.78547 6.98369 7.15304 7.21118 7.31399 7.51970 7.54608 8.04162 8.11939 8.31059 8.62800 9.08732 9.75079 11.23559 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021132 B = 0.006689 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.680714 B = 4185.277883 C = 4868.044691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.517 5.517 3 C 0.051 3.949 4 C 0.086 3.914 5 H 0.044 0.956 6 N -0.650 5.650 7 C 0.110 3.890 8 C 0.049 3.951 9 C -0.461 4.461 10 H 0.055 0.945 11 C 0.073 3.927 12 N -0.883 5.883 13 Si 0.884 3.116 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.277 1.277 17 C -0.219 4.219 18 C -0.158 4.158 19 C -0.124 4.124 20 C 0.089 3.911 21 C -0.167 4.167 22 C -0.126 4.126 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.332 0.668 29 H 0.070 0.930 30 H -0.007 1.007 31 H 0.255 0.745 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.337 -13.014 -1.388 13.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.241 5.241 3 C -0.077 4.077 4 C -0.026 4.026 5 H 0.062 0.938 6 N -0.280 5.280 7 C -0.019 4.019 8 C 0.048 3.952 9 C -0.499 4.499 10 H 0.074 0.926 11 C -0.129 4.129 12 N -0.521 5.521 13 Si 0.713 3.287 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.202 1.202 17 C -0.256 4.256 18 C -0.197 4.197 19 C -0.162 4.162 20 C -0.001 4.001 21 C -0.226 4.226 22 C -0.183 4.183 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.052 0.948 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.150 0.850 29 H 0.088 0.912 30 H 0.011 0.989 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.917 -12.886 -0.731 13.048 hybrid contribution -0.213 0.556 -1.051 1.209 sum -2.130 -12.329 -1.783 12.638 Atomic orbital electron populations 1.22507 0.88715 1.01088 1.01009 1.64825 1.07665 1.16137 1.35441 1.23171 0.95121 0.88112 1.01290 1.22301 0.95659 0.89536 0.95055 0.93827 1.60246 1.43707 1.13062 1.11003 1.21499 0.94066 0.92572 0.93718 1.18900 0.87678 0.91585 0.97039 1.20130 1.07744 1.30269 0.91757 0.92635 1.24835 0.96917 0.96410 0.94706 1.70006 1.29759 1.40341 1.11983 0.86743 0.81336 0.79110 0.81557 1.20941 1.21605 1.20186 1.23086 0.98530 1.03704 1.00323 1.22481 1.05765 0.98698 0.92716 1.22695 0.96428 0.97114 0.99984 1.21717 0.94300 0.95054 0.89034 1.22423 0.99316 1.02246 0.98579 1.21732 1.01351 0.94115 1.01136 0.91988 0.91760 0.94789 0.90595 0.92182 0.84980 0.91187 0.98937 0.93542 0.92162 0.90624 0.90142 0.92189 0.90382 0.91603 0.92375 0.92442 0.92061 0.92133 0.93098 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 8.32 60.07 0.50 0.71 16 2 N -0.52 -7.69 5.17 -223.16 -1.15 -8.84 16 3 C 0.05 0.90 6.22 -1.90 -0.01 0.89 16 4 C 0.09 1.47 3.35 -65.85 -0.22 1.25 16 5 H 0.04 0.76 7.90 -51.93 -0.41 0.35 16 6 N -0.65 -12.96 5.62 -104.76 -0.59 -13.55 16 7 C 0.11 2.45 5.60 -3.83 -0.02 2.42 16 8 C 0.05 1.18 1.74 -155.66 -0.27 0.91 16 9 C -0.46 -12.38 8.15 -34.44 -0.28 -12.67 16 10 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 11 C 0.07 2.01 5.39 -17.82 -0.10 1.91 16 12 N -0.88 -25.09 12.95 55.43 0.72 -24.38 16 13 Si 0.88 21.54 29.54 -169.99 -5.02 16.52 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C -0.22 -4.77 9.88 -26.73 -0.26 -5.04 16 18 C -0.16 -3.75 9.48 -26.73 -0.25 -4.00 16 19 C -0.12 -1.76 5.70 -25.38 -0.14 -1.91 16 20 C 0.09 1.18 0.89 -130.53 -0.12 1.06 16 21 C -0.17 -2.07 6.98 37.16 0.26 -1.81 16 22 C -0.13 -1.42 8.64 37.16 0.32 -1.10 16 23 H 0.06 0.71 7.75 -51.93 -0.40 0.30 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.03 0.46 6.27 -51.93 -0.33 0.13 16 26 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.06 1.20 7.96 -51.93 -0.41 0.78 16 28 H 0.33 6.28 8.45 -39.29 -0.33 5.94 16 29 H 0.07 1.72 8.13 -51.93 -0.42 1.30 16 30 H -0.01 -0.15 7.94 -51.93 -0.41 -0.57 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 33 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.08 1.14 7.51 -51.93 -0.39 0.75 16 37 H 0.07 0.84 7.69 -51.93 -0.40 0.44 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.64 6.69 -51.92 -0.35 0.30 16 40 H 0.06 0.87 7.59 -51.93 -0.39 0.47 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -27.76 336.33 -9.60 -37.36 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.02 Total: 5.20 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -0.60 Total: -17.37 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -1.03 Total: -46.77 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.76 -9.60 -37.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694151846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.519 kcal (2) G-P(sol) polarization free energy of solvation -27.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds