Wall clock time and date at job start Mon Mar 30 2020 04:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46872 * 2 1 4 4 H 1.09004 * 110.43188 * 304.11191 * 3 2 1 5 5 C 1.50130 * 110.38331 * 181.77105 * 3 2 1 6 6 H 1.09005 * 110.06219 * 160.84299 * 5 3 2 7 7 C 1.50758 * 125.95575 * 24.72307 * 5 3 2 8 8 N 1.50182 * 101.73327 * 204.62381 * 7 5 3 9 9 C 1.49703 * 107.64502 * 25.70766 * 8 7 5 10 10 C 1.50132 * 104.73885 * 7.44416 * 9 8 7 11 11 H 1.09003 * 110.05432 * 79.78399 * 10 9 8 12 12 C 1.50745 * 126.50968 * 216.21115 * 10 9 8 13 13 N 1.49702 * 110.38459 * 66.45512 * 3 2 1 14 14 C 1.46905 * 111.00183 * 233.02765 * 13 3 2 15 15 H 1.09006 * 109.47173 * 304.19104 * 14 13 3 16 16 C 1.52998 * 109.46935 * 64.18432 * 14 13 3 17 17 C 1.52996 * 109.47477 * 184.18897 * 14 13 3 18 18 C 1.50699 * 109.47472 * 174.44827 * 17 14 13 19 19 H 1.08004 * 119.99527 * 3.05044 * 18 17 14 20 20 C 1.37873 * 120.00161 * 183.05224 * 18 17 14 21 21 N 1.31511 * 119.99983 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99773 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46875 * 60.00757 * 22 20 18 24 24 H 1.48507 * 109.46698 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47322 * 300.00193 * 22 20 18 26 26 H 1.08999 * 109.47750 * 59.99912 * 1 2 3 27 27 H 1.09000 * 109.47487 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47455 * 299.99830 * 1 2 3 29 29 H 1.08998 * 109.46932 * 240.00219 * 2 1 3 30 30 H 1.08998 * 109.47081 * 119.99751 * 2 1 3 31 31 H 1.09009 * 110.70759 * 86.75500 * 7 5 3 32 32 H 1.08998 * 111.59151 * 322.89069 * 7 5 3 33 33 H 1.00894 * 111.00133 * 264.04061 * 8 7 5 34 34 H 1.09000 * 110.37997 * 248.63348 * 9 8 7 35 35 H 1.08999 * 110.48290 * 126.31079 * 9 8 7 36 36 H 1.08998 * 110.87104 * 36.17998 * 12 10 9 37 37 H 1.09002 * 110.87118 * 272.50536 * 12 10 9 38 38 H 1.08999 * 109.47592 * 300.00464 * 16 14 13 39 39 H 1.09001 * 109.47247 * 60.00739 * 16 14 13 40 40 H 1.09004 * 109.47187 * 180.02562 * 16 14 13 41 41 H 1.09005 * 109.46820 * 294.44361 * 17 14 13 42 42 H 1.08997 * 109.47352 * 54.44350 * 17 14 13 43 43 H 0.97001 * 120.00122 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6267 1.9922 -0.8457 5 6 3.5404 1.4667 -0.0435 6 1 3.8891 2.4432 -0.3798 7 6 4.4278 0.3779 -0.5912 8 7 5.7075 0.6223 0.1558 9 6 5.3593 1.3070 1.4407 10 6 3.8593 1.2781 1.4946 11 1 3.5160 0.2992 1.8294 12 6 2.9606 2.3567 2.0437 13 7 1.6852 2.1210 1.2864 14 6 0.9793 3.3851 1.0378 15 1 1.5879 4.0207 0.3945 16 6 -0.3574 3.0963 0.3518 17 6 0.7266 4.0983 2.3676 18 6 0.1260 5.4550 2.1038 19 1 -0.1028 5.7569 1.0924 20 6 -0.1314 6.3109 3.1536 21 7 0.1477 5.9435 4.3852 22 14 -0.8752 7.9930 2.8265 23 1 -2.1945 7.8305 2.1645 24 1 -1.0516 8.7147 4.1124 25 1 0.0297 8.7710 1.9428 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.5743 0.5034 -1.6641 32 1 4.0312 -0.6126 -0.3686 33 1 6.3443 1.1820 -0.3913 34 1 5.7191 2.3358 1.4322 35 1 5.7802 0.7653 2.2878 36 1 3.3638 3.3458 1.8267 37 1 2.8062 2.2255 3.1147 38 1 -0.1774 2.5882 -0.5956 39 1 -0.9661 2.4608 0.9949 40 1 -0.8810 4.0343 0.1668 41 1 0.0380 3.5074 2.9716 42 1 1.6694 4.2159 2.9018 43 1 -0.0330 6.5458 5.1237 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695838645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:50 Heat of formation + Delta-G solvation = -3.311845 kcal Electronic energy + Delta-G solvation = -20014.193798 eV Core-core repulsion = 17286.435882 eV Total energy + Delta-G solvation = -2727.757916 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.91101 -38.07876 -35.61377 -34.20539 -33.40889 -30.57403 -29.74256 -28.72468 -27.05606 -25.42345 -24.23887 -23.20875 -21.28018 -20.92991 -19.89759 -18.59276 -17.31118 -16.98125 -16.57772 -16.29554 -15.66342 -15.11202 -15.03591 -14.92310 -14.50839 -14.00956 -13.78600 -13.56593 -13.37741 -13.22781 -12.93868 -12.82679 -12.68405 -12.58404 -12.34743 -12.24722 -12.15217 -12.06825 -11.76214 -11.57227 -11.31766 -11.23912 -10.97647 -10.92575 -10.54754 -9.61802 -9.13959 -8.19793 -6.29904 1.38009 1.40681 1.48479 2.38792 2.89251 2.93763 3.13754 3.18684 3.69022 4.00549 4.06481 4.24066 4.25777 4.34733 4.39119 4.45306 4.51335 4.57356 4.64394 4.69499 4.72466 4.76226 4.82202 4.94946 4.99067 5.03647 5.09813 5.16434 5.19291 5.25308 5.32115 5.39057 5.43896 5.51406 5.60117 5.63805 5.69744 5.78811 6.02226 6.18978 6.37147 6.40408 6.86073 7.38448 8.92131 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026581 B = 0.005841 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.147861 B = 4792.792340 C = 5409.034802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C 0.086 3.914 4 H 0.064 0.936 5 C -0.148 4.148 6 H 0.056 0.944 7 C 0.073 3.927 8 N -0.684 5.684 9 C 0.066 3.934 10 C -0.122 4.122 11 H 0.086 0.914 12 C 0.068 3.932 13 N -0.520 5.520 14 C 0.093 3.907 15 H 0.013 0.987 16 C -0.119 4.119 17 C 0.044 3.956 18 C -0.534 4.534 19 H 0.059 0.941 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.961 3.039 23 H -0.266 1.266 24 H -0.284 1.284 25 H -0.269 1.269 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.346 0.654 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.029 0.971 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.048 0.952 41 H -0.012 1.012 42 H -0.008 1.008 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.418 -11.529 -11.260 17.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.023 4.023 4 H 0.082 0.918 5 C -0.169 4.169 6 H 0.075 0.925 7 C -0.056 4.056 8 N -0.312 5.312 9 C -0.063 4.063 10 C -0.142 4.142 11 H 0.105 0.895 12 C -0.060 4.060 13 N -0.244 5.244 14 C -0.015 4.015 15 H 0.031 0.969 16 C -0.176 4.176 17 C 0.006 3.994 18 C -0.573 4.573 19 H 0.078 0.922 20 C -0.196 4.196 21 N -0.573 5.573 22 Si 0.786 3.214 23 H -0.191 1.191 24 H -0.209 1.209 25 H -0.194 1.194 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.161 0.839 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.006 0.994 42 H 0.010 0.990 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.133 -12.455 -10.518 17.794 hybrid contribution -0.219 2.804 -0.148 2.816 sum 6.915 -9.651 -10.667 15.960 Atomic orbital electron populations 1.21775 0.95941 1.01251 1.01428 1.21395 0.96098 0.93752 1.01910 1.21664 0.92602 0.96895 0.91095 0.91752 1.23062 0.96489 1.00223 0.97154 0.92534 1.22191 0.87972 0.97594 0.97800 1.63318 1.13278 1.49383 1.05256 1.21777 0.92724 0.97917 0.93900 1.22365 0.95724 0.99817 0.96310 0.89529 1.22043 0.89523 0.96133 0.98326 1.65212 1.19733 1.22116 1.17375 1.21638 0.94805 0.88317 0.96755 0.96898 1.21741 0.95876 1.00790 0.99212 1.18937 0.94789 0.93569 0.92057 1.21561 1.41292 1.01144 0.93292 0.92239 1.25915 0.96232 1.02593 0.94824 1.70102 1.49422 1.38154 0.99577 0.85565 0.79268 0.79146 0.77459 1.19097 1.20920 1.19363 0.92961 0.92203 0.93758 0.89859 0.92416 0.89521 0.89187 0.83866 0.93074 0.89629 0.95243 0.91995 0.91718 0.93158 0.93295 0.99398 0.98955 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.66 71.98 0.62 -2.96 16 2 C -0.09 -2.17 4.76 30.59 0.15 -2.03 16 3 C 0.09 2.37 2.10 43.44 0.09 2.46 16 4 H 0.06 1.84 6.37 -2.38 -0.02 1.82 16 5 C -0.15 -3.63 2.68 -10.59 -0.03 -3.66 16 6 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 7 C 0.07 1.38 6.82 84.93 0.58 1.96 16 8 N -0.68 -13.51 7.57 -507.60 -3.84 -17.35 16 9 C 0.07 1.50 7.43 84.83 0.63 2.13 16 10 C -0.12 -3.30 2.87 -10.59 -0.03 -3.33 16 11 H 0.09 2.39 6.92 -2.39 -0.02 2.37 16 12 C 0.07 2.41 5.05 84.93 0.43 2.84 16 13 N -0.52 -18.74 4.40 -839.22 -3.69 -22.43 16 14 C 0.09 3.96 1.74 44.91 0.08 4.04 16 15 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 16 C -0.12 -4.51 7.79 71.98 0.56 -3.95 16 17 C 0.04 2.36 4.39 29.85 0.13 2.49 16 18 C -0.53 -30.49 8.46 25.60 0.22 -30.27 16 19 H 0.06 3.25 6.99 -2.91 -0.02 3.23 16 20 C 0.00 0.12 5.46 84.65 0.46 0.59 16 21 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 22 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H 0.05 1.20 7.28 -2.39 -0.02 1.19 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.04 1.33 6.33 -2.39 -0.02 1.32 16 29 H 0.08 1.51 7.50 -2.39 -0.02 1.49 16 30 H 0.06 1.43 6.95 -2.39 -0.02 1.41 16 31 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.09 1.66 7.16 -2.39 -0.02 1.64 16 33 H 0.35 5.73 8.94 -89.70 -0.80 4.93 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.03 1.15 7.63 -2.39 -0.02 1.13 16 37 H 0.06 2.41 8.12 -2.39 -0.02 2.40 16 38 H 0.06 2.03 5.29 -2.39 -0.01 2.02 16 39 H 0.05 1.95 7.08 -2.39 -0.02 1.94 16 40 H 0.05 1.97 6.93 -2.38 -0.02 1.95 16 41 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 42 H -0.01 -0.46 6.70 -2.39 -0.02 -0.48 16 43 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -63.79 315.79 -1.16 -64.95 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.18 Total: 15.06 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 3.89 Total: -29.69 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -7.25 Total: -96.93 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -63.79 -1.16 -64.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.637 kcal (2) G-P(sol) polarization free energy of solvation -63.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds