Wall clock time and date at job start Mon Mar 30 2020 04:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46956 * 2 1 4 4 H 1.08994 * 110.47187 * 304.02576 * 3 2 1 5 5 C 1.49487 * 110.41202 * 181.59792 * 3 2 1 6 6 H 1.08997 * 107.91201 * 163.66178 * 5 3 2 7 7 C 1.49472 * 129.08598 * 29.72098 * 5 3 2 8 8 N 1.49767 * 104.56679 * 211.50164 * 7 5 3 9 9 C 1.50111 * 107.62292 * 6.76955 * 8 7 5 10 10 C 1.51376 * 102.36968 * 25.79796 * 9 8 7 11 11 H 1.09000 * 111.66732 * 71.65199 * 10 9 8 12 12 C 1.51372 * 124.05506 * 209.24963 * 10 9 8 13 13 N 1.49770 * 110.41466 * 66.45751 * 3 2 1 14 14 C 1.46895 * 110.99969 * 233.65381 * 13 3 2 15 15 H 1.08995 * 109.47279 * 63.38516 * 14 13 3 16 16 C 1.53004 * 109.47307 * 303.38310 * 14 13 3 17 17 C 1.53007 * 109.47297 * 183.38653 * 14 13 3 18 18 C 1.50694 * 109.46875 * 295.43710 * 17 14 13 19 19 H 1.08003 * 120.00024 * 4.94626 * 18 17 14 20 20 C 1.37872 * 120.00068 * 184.95425 * 18 17 14 21 21 N 1.31515 * 119.99909 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00257 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47156 * 59.99632 * 22 20 18 24 24 H 1.48499 * 109.47100 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46705 * 299.99410 * 22 20 18 26 26 H 1.08999 * 109.47070 * 300.00011 * 1 2 3 27 27 H 1.09003 * 109.47410 * 59.99713 * 1 2 3 28 28 H 1.09000 * 109.47250 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46910 * 240.00522 * 2 1 3 30 30 H 1.09001 * 109.46957 * 120.00552 * 2 1 3 31 31 H 1.08995 * 110.42059 * 330.28237 * 7 5 3 32 32 H 1.09010 * 110.41387 * 92.72888 * 7 5 3 33 33 H 1.00906 * 110.99832 * 128.41060 * 8 7 5 34 34 H 1.09000 * 110.82878 * 267.58156 * 9 8 7 35 35 H 1.08999 * 110.82818 * 144.01527 * 9 8 7 36 36 H 1.08998 * 110.82869 * 32.53388 * 12 10 9 37 37 H 1.09002 * 110.82950 * 268.96706 * 12 10 9 38 38 H 1.09005 * 109.46943 * 304.98035 * 16 14 13 39 39 H 1.09000 * 109.46849 * 64.97760 * 16 14 13 40 40 H 1.08995 * 109.47677 * 184.97830 * 16 14 13 41 41 H 1.08997 * 109.47217 * 55.43943 * 17 14 13 42 42 H 1.09006 * 109.46970 * 175.43573 * 17 14 13 43 43 H 0.97003 * 120.00083 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6283 1.9923 -0.8463 5 6 3.5341 1.4673 -0.0391 6 1 3.8453 2.4706 -0.3298 7 6 4.4774 0.4808 -0.6485 8 7 5.6965 0.5396 0.2195 9 6 5.3767 1.4191 1.3932 10 6 3.8721 1.2889 1.4956 11 1 3.5772 0.3062 1.8635 12 6 2.9624 2.3716 2.0357 13 7 1.6855 2.1219 1.2868 14 6 0.9668 3.3787 1.0380 15 1 0.0203 3.1639 0.5420 16 6 1.8170 4.2841 0.1444 17 6 0.6968 4.0839 2.3687 18 6 -0.2322 3.2413 3.2042 19 1 -0.5302 2.2621 2.8594 20 6 -0.7017 3.7204 4.4087 21 7 -0.3385 4.9126 4.8287 22 14 -1.8527 2.6757 5.4448 23 1 -1.1775 1.4027 5.8037 24 1 -2.2097 3.4125 6.6837 25 1 -3.0854 2.3812 4.6708 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 4.0454 -0.5197 -0.6303 32 1 4.7235 0.7711 -1.6700 33 1 5.9691 -0.3833 0.5230 34 1 5.6637 2.4515 1.1935 35 1 5.8600 1.0494 2.2976 36 1 3.3588 3.3608 1.8068 37 1 2.8120 2.2519 3.1086 38 1 2.7971 4.4270 0.5996 39 1 1.9353 3.8204 -0.8349 40 1 1.3243 5.2498 0.0320 41 1 1.6367 4.2261 2.9019 42 1 0.2363 5.0535 2.1791 43 1 -0.6692 5.2498 5.6760 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695838646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:53 Heat of formation + Delta-G solvation = 21.045576 kcal Electronic energy + Delta-G solvation = -20297.550910 eV Core-core repulsion = 17570.849210 eV Total energy + Delta-G solvation = -2726.701699 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.75389 -36.74958 -33.95975 -32.53005 -31.46808 -29.51674 -27.94158 -27.38671 -25.86387 -23.69961 -22.92229 -21.67705 -20.47855 -18.92838 -18.69691 -16.51190 -16.15596 -15.44932 -15.25472 -14.46652 -14.27811 -14.01823 -13.57317 -13.35517 -12.94207 -12.72546 -12.26942 -12.11101 -12.01609 -11.67691 -11.63832 -11.33949 -11.28632 -11.10743 -10.89001 -10.74577 -10.66372 -10.49405 -10.26679 -10.15236 -9.90274 -9.73454 -9.09568 -9.02653 -8.60960 -8.26359 -7.53324 -5.89430 -3.87627 3.39896 3.43810 3.47269 4.05579 4.18299 4.43441 4.55852 4.74467 5.19358 5.28248 5.41780 5.46427 5.49666 5.53453 5.59780 5.70820 5.72267 5.75247 5.85737 5.92635 5.97120 5.98123 6.00453 6.05528 6.18443 6.28328 6.35956 6.41816 6.45255 6.57952 6.60633 6.69448 6.72759 6.83062 6.96059 7.25652 7.49856 7.61983 7.80053 7.99344 8.12252 8.57680 9.19418 9.74519 11.22469 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024040 B = 0.006627 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.423294 B = 4224.239106 C = 4441.232115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C 0.085 3.915 4 H 0.066 0.934 5 C -0.144 4.144 6 H 0.068 0.932 7 C 0.068 3.932 8 N -0.685 5.685 9 C 0.061 3.939 10 C -0.144 4.144 11 H 0.084 0.916 12 C 0.065 3.935 13 N -0.487 5.487 14 C 0.079 3.921 15 H 0.071 0.929 16 C -0.185 4.185 17 C 0.030 3.970 18 C -0.492 4.492 19 H 0.062 0.938 20 C 0.051 3.949 21 N -0.904 5.904 22 Si 0.889 3.111 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.279 1.279 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.335 0.665 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.041 0.959 40 H 0.056 0.944 41 H 0.015 0.985 42 H 0.021 0.979 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.522 -8.259 -9.975 15.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.139 4.139 3 C -0.023 4.023 4 H 0.084 0.916 5 C -0.164 4.164 6 H 0.087 0.913 7 C -0.061 4.061 8 N -0.312 5.312 9 C -0.068 4.068 10 C -0.165 4.165 11 H 0.102 0.898 12 C -0.063 4.063 13 N -0.210 5.210 14 C -0.029 4.029 15 H 0.089 0.911 16 C -0.244 4.244 17 C -0.008 4.008 18 C -0.531 4.531 19 H 0.080 0.920 20 C -0.148 4.148 21 N -0.545 5.545 22 Si 0.717 3.283 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.205 1.205 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.149 0.851 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.039 0.961 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.499 -7.943 -9.916 15.285 hybrid contribution -0.748 -0.440 0.700 1.115 sum 7.750 -8.382 -9.215 14.671 Atomic orbital electron populations 1.21690 0.95586 1.00455 1.02709 1.21409 0.96506 0.95508 1.00458 1.21480 0.91204 0.96088 0.93574 0.91587 1.22351 0.96513 1.00634 0.96893 0.91318 1.21616 0.89095 0.98293 0.97101 1.63347 1.33558 1.16205 1.18139 1.22279 0.93491 0.98694 0.92327 1.23247 0.95461 1.01425 0.96352 0.89757 1.22325 0.88496 0.95621 0.99830 1.65360 1.18661 1.22935 1.14018 1.22064 0.95029 0.87469 0.98349 0.91075 1.22599 1.01249 1.01165 0.99387 1.19197 0.96960 0.95100 0.89496 1.21156 1.26466 1.02182 1.03254 0.92002 1.25010 0.96850 0.94983 0.97985 1.69956 1.45689 1.17385 1.21431 0.86710 0.81449 0.80453 0.79639 1.20427 1.21677 1.20475 0.90656 0.93785 0.93996 0.93049 0.92108 0.92794 0.90779 0.85061 0.90341 0.91259 0.93060 0.89607 0.93006 0.94023 0.92526 0.96666 0.96095 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.82 37.16 0.36 -1.77 16 2 C -0.10 -1.39 5.00 -26.73 -0.13 -1.52 16 3 C 0.09 1.27 1.93 -67.84 -0.13 1.14 16 4 H 0.07 1.00 6.22 -51.93 -0.32 0.68 16 5 C -0.14 -1.92 2.26 -91.26 -0.21 -2.13 16 6 H 0.07 1.01 7.39 -51.93 -0.38 0.62 16 7 C 0.07 0.78 7.18 -3.96 -0.03 0.75 16 8 N -0.68 -7.83 7.57 -111.81 -0.85 -8.68 16 9 C 0.06 0.74 7.34 -2.84 -0.02 0.72 16 10 C -0.14 -2.02 3.15 -89.43 -0.28 -2.31 16 11 H 0.08 1.23 7.19 -51.93 -0.37 0.86 16 12 C 0.06 1.13 4.73 -2.84 -0.01 1.12 16 13 N -0.49 -8.84 4.30 -216.60 -0.93 -9.77 16 14 C 0.08 1.59 2.29 -67.71 -0.16 1.43 16 15 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 16 C -0.19 -3.18 8.02 37.16 0.30 -2.88 16 17 C 0.03 0.74 4.28 -27.88 -0.12 0.62 16 18 C -0.49 -13.58 8.83 -34.44 -0.30 -13.88 16 19 H 0.06 1.70 7.73 -52.48 -0.41 1.30 16 20 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 21 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 22 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H 0.07 1.32 7.85 -51.93 -0.41 0.91 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.61 7.47 -51.92 -0.39 0.22 16 30 H 0.06 0.89 7.12 -51.93 -0.37 0.52 16 31 H 0.05 0.58 7.06 -51.93 -0.37 0.21 16 32 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.34 3.26 8.94 -39.29 -0.35 2.91 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.91 5.57 -51.93 -0.29 0.62 16 37 H 0.09 1.70 8.12 -51.93 -0.42 1.28 16 38 H 0.05 0.88 6.00 -51.93 -0.31 0.57 16 39 H 0.04 0.64 6.46 -51.93 -0.34 0.30 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.40 6.79 -51.93 -0.35 0.05 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 319.67 15.07 4.82 4.82 Total: -1.00 -28.83 319.67 -9.67 -38.50 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.60 Total: 1.88 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -0.83 Total: -17.34 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -1.04 Total: -44.83 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.83 -9.67 -38.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.550 kcal (2) G-P(sol) polarization free energy of solvation -28.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds