Wall clock time and date at job start Mon Mar 30 2020 04:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46956 * 2 1 4 4 H 1.08994 * 110.47187 * 304.02576 * 3 2 1 5 5 C 1.49487 * 110.41202 * 181.59792 * 3 2 1 6 6 H 1.08997 * 107.91201 * 163.66178 * 5 3 2 7 7 C 1.49472 * 129.08598 * 29.72098 * 5 3 2 8 8 N 1.49767 * 104.56679 * 211.50164 * 7 5 3 9 9 C 1.50111 * 107.62292 * 6.76955 * 8 7 5 10 10 C 1.51376 * 102.36968 * 25.79796 * 9 8 7 11 11 H 1.09000 * 111.66732 * 71.65199 * 10 9 8 12 12 C 1.51372 * 124.05506 * 209.24963 * 10 9 8 13 13 N 1.49770 * 110.41466 * 66.45751 * 3 2 1 14 14 C 1.46895 * 110.99969 * 233.65381 * 13 3 2 15 15 H 1.08995 * 109.47279 * 63.38516 * 14 13 3 16 16 C 1.53004 * 109.47307 * 303.38310 * 14 13 3 17 17 C 1.53007 * 109.47297 * 183.38653 * 14 13 3 18 18 C 1.50694 * 109.46875 * 295.43710 * 17 14 13 19 19 H 1.08003 * 120.00024 * 4.94626 * 18 17 14 20 20 C 1.37872 * 120.00068 * 184.95425 * 18 17 14 21 21 N 1.31515 * 119.99909 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00257 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47156 * 59.99632 * 22 20 18 24 24 H 1.48499 * 109.47100 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46705 * 299.99410 * 22 20 18 26 26 H 1.08999 * 109.47070 * 300.00011 * 1 2 3 27 27 H 1.09003 * 109.47410 * 59.99713 * 1 2 3 28 28 H 1.09000 * 109.47250 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46910 * 240.00522 * 2 1 3 30 30 H 1.09001 * 109.46957 * 120.00552 * 2 1 3 31 31 H 1.08995 * 110.42059 * 330.28237 * 7 5 3 32 32 H 1.09010 * 110.41387 * 92.72888 * 7 5 3 33 33 H 1.00906 * 110.99832 * 128.41060 * 8 7 5 34 34 H 1.09000 * 110.82878 * 267.58156 * 9 8 7 35 35 H 1.08999 * 110.82818 * 144.01527 * 9 8 7 36 36 H 1.08998 * 110.82869 * 32.53388 * 12 10 9 37 37 H 1.09002 * 110.82950 * 268.96706 * 12 10 9 38 38 H 1.09005 * 109.46943 * 304.98035 * 16 14 13 39 39 H 1.09000 * 109.46849 * 64.97760 * 16 14 13 40 40 H 1.08995 * 109.47677 * 184.97830 * 16 14 13 41 41 H 1.08997 * 109.47217 * 55.43943 * 17 14 13 42 42 H 1.09006 * 109.46970 * 175.43573 * 17 14 13 43 43 H 0.97003 * 120.00083 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6283 1.9923 -0.8463 5 6 3.5341 1.4673 -0.0391 6 1 3.8453 2.4706 -0.3298 7 6 4.4774 0.4808 -0.6485 8 7 5.6965 0.5396 0.2195 9 6 5.3767 1.4191 1.3932 10 6 3.8721 1.2889 1.4956 11 1 3.5772 0.3062 1.8635 12 6 2.9624 2.3716 2.0357 13 7 1.6855 2.1219 1.2868 14 6 0.9668 3.3787 1.0380 15 1 0.0203 3.1639 0.5420 16 6 1.8170 4.2841 0.1444 17 6 0.6968 4.0839 2.3687 18 6 -0.2322 3.2413 3.2042 19 1 -0.5302 2.2621 2.8594 20 6 -0.7017 3.7204 4.4087 21 7 -0.3385 4.9126 4.8287 22 14 -1.8527 2.6757 5.4448 23 1 -1.1775 1.4027 5.8037 24 1 -2.2097 3.4125 6.6837 25 1 -3.0854 2.3812 4.6708 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 4.0454 -0.5197 -0.6303 32 1 4.7235 0.7711 -1.6700 33 1 5.9691 -0.3833 0.5230 34 1 5.6637 2.4515 1.1935 35 1 5.8600 1.0494 2.2976 36 1 3.3588 3.3608 1.8068 37 1 2.8120 2.2519 3.1086 38 1 2.7971 4.4270 0.5996 39 1 1.9353 3.8204 -0.8349 40 1 1.3243 5.2498 0.0320 41 1 1.6367 4.2261 2.9019 42 1 0.2363 5.0535 2.1791 43 1 -0.6692 5.2498 5.6760 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695838646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:52 Heat of formation + Delta-G solvation = 1.575959 kcal Electronic energy + Delta-G solvation = -20298.395176 eV Core-core repulsion = 17570.849210 eV Total energy + Delta-G solvation = -2727.545965 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.96463 -38.06071 -35.49602 -34.30046 -32.91789 -30.62228 -29.51921 -28.99262 -27.07379 -25.26564 -24.55147 -22.88668 -21.66612 -20.37293 -19.98045 -18.36444 -17.53235 -16.84872 -16.54046 -16.30407 -15.57071 -15.22409 -14.82909 -14.69806 -14.39294 -13.99877 -13.71653 -13.65665 -13.42162 -13.16001 -13.02740 -12.91395 -12.63112 -12.48673 -12.45728 -12.38358 -12.07315 -12.04696 -11.72840 -11.60945 -11.23246 -11.10680 -10.93507 -10.89168 -10.48591 -9.54956 -8.94564 -8.11076 -6.15997 1.40047 1.42363 1.49924 2.45786 2.97485 3.03732 3.21693 3.26261 3.66870 4.05231 4.11290 4.21556 4.35157 4.37825 4.39957 4.41430 4.51595 4.57222 4.61260 4.69812 4.76010 4.80680 4.84758 4.91507 4.95694 5.09252 5.12014 5.14455 5.18054 5.20006 5.31255 5.35048 5.46679 5.50593 5.60527 5.63051 5.72745 5.89970 6.20339 6.31695 6.45478 6.51757 6.98574 7.50192 9.00834 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024040 B = 0.006627 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.423294 B = 4224.239106 C = 4441.232115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C 0.087 3.913 4 H 0.068 0.932 5 C -0.130 4.130 6 H 0.057 0.943 7 C 0.073 3.927 8 N -0.684 5.684 9 C 0.066 3.934 10 C -0.137 4.137 11 H 0.082 0.918 12 C 0.067 3.933 13 N -0.505 5.505 14 C 0.090 3.910 15 H 0.062 0.938 16 C -0.174 4.174 17 C 0.037 3.963 18 C -0.499 4.499 19 H 0.059 0.941 20 C -0.004 4.004 21 N -0.940 5.940 22 Si 0.954 3.046 23 H -0.273 1.273 24 H -0.287 1.287 25 H -0.270 1.270 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.348 0.652 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.053 0.947 41 H -0.006 1.006 42 H -0.009 1.009 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.230 -10.381 -11.480 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C -0.021 4.021 4 H 0.086 0.914 5 C -0.151 4.151 6 H 0.076 0.924 7 C -0.056 4.056 8 N -0.313 5.313 9 C -0.063 4.063 10 C -0.157 4.157 11 H 0.100 0.900 12 C -0.061 4.061 13 N -0.228 5.228 14 C -0.019 4.019 15 H 0.080 0.920 16 C -0.233 4.233 17 C 0.000 4.000 18 C -0.537 4.537 19 H 0.077 0.923 20 C -0.200 4.200 21 N -0.582 5.582 22 Si 0.780 3.220 23 H -0.198 1.198 24 H -0.213 1.213 25 H -0.195 1.195 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.164 0.836 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.012 0.988 42 H 0.009 0.991 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.214 -10.085 -11.437 17.816 hybrid contribution -0.972 0.229 1.167 1.536 sum 8.241 -9.856 -10.270 16.448 Atomic orbital electron populations 1.21643 0.96281 1.01064 1.01188 1.21400 0.95816 0.94611 1.01503 1.21510 0.92453 0.96462 0.91668 0.91389 1.22256 0.95581 1.00913 0.96312 0.92411 1.21636 0.88344 0.98332 0.97298 1.63328 1.33352 1.17023 1.17570 1.22233 0.91874 0.98809 0.93385 1.23113 0.96398 0.99641 0.96591 0.89955 1.22162 0.89308 0.96689 0.97969 1.65240 1.19261 1.21912 1.16414 1.21710 0.95761 0.88640 0.95762 0.91972 1.22454 1.00385 1.00531 0.99883 1.19032 0.95061 0.93981 0.91911 1.21458 1.26464 1.02177 1.03630 0.92269 1.25841 0.98603 0.96160 0.99393 1.70088 1.47123 1.19092 1.21936 0.85664 0.79546 0.78807 0.77958 1.19802 1.21314 1.19513 0.94348 0.93068 0.92357 0.89986 0.92880 0.91272 0.89788 0.83640 0.91041 0.89896 0.93821 0.93084 0.93125 0.91474 0.92798 0.98811 0.99102 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.82 71.98 0.71 -3.26 16 2 C -0.10 -2.39 5.00 30.59 0.15 -2.23 16 3 C 0.09 2.45 1.93 43.23 0.08 2.53 16 4 H 0.07 1.91 6.22 -2.39 -0.01 1.89 16 5 C -0.13 -3.19 2.26 -11.21 -0.03 -3.22 16 6 H 0.06 1.57 7.39 -2.39 -0.02 1.55 16 7 C 0.07 1.41 7.18 84.61 0.61 2.02 16 8 N -0.68 -13.46 7.57 -507.67 -3.84 -17.30 16 9 C 0.07 1.49 7.34 85.14 0.62 2.11 16 10 C -0.14 -3.68 3.15 -10.02 -0.03 -3.71 16 11 H 0.08 2.28 7.19 -2.39 -0.02 2.26 16 12 C 0.07 2.38 4.73 85.14 0.40 2.78 16 13 N -0.50 -18.47 4.30 -839.20 -3.61 -22.08 16 14 C 0.09 3.69 2.29 44.92 0.10 3.79 16 15 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 16 C -0.17 -5.92 8.02 71.98 0.58 -5.35 16 17 C 0.04 1.96 4.28 29.85 0.13 2.08 16 18 C -0.50 -28.42 8.83 25.60 0.23 -28.19 16 19 H 0.06 3.34 7.73 -2.91 -0.02 3.32 16 20 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 21 N -0.94 -58.12 13.29 21.45 0.28 -57.83 16 22 Si 0.95 45.80 29.54 68.60 2.03 47.83 16 23 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 26 H 0.04 1.33 7.85 -2.39 -0.02 1.31 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.60 7.47 -2.38 -0.02 1.58 16 30 H 0.05 1.43 7.12 -2.39 -0.02 1.41 16 31 H 0.07 1.16 7.06 -2.39 -0.02 1.15 16 32 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.35 5.53 8.94 -89.69 -0.80 4.72 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.04 1.60 5.57 -2.39 -0.01 1.59 16 37 H 0.05 2.14 8.12 -2.39 -0.02 2.12 16 38 H 0.05 1.73 6.00 -2.38 -0.01 1.71 16 39 H 0.07 1.94 6.46 -2.39 -0.02 1.92 16 40 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 41 H -0.01 -0.36 6.79 -2.39 -0.02 -0.38 16 42 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 43 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -63.57 319.67 -0.95 -64.53 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.17 Total: 15.28 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 4.02 Total: -30.42 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -7.17 Total: -97.21 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -63.57 -0.95 -64.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.104 kcal (2) G-P(sol) polarization free energy of solvation -63.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds