Wall clock time and date at job start Mon Mar 30 2020 03:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99745 * 3 2 1 5 5 H 1.48496 * 109.47251 * 30.00188 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46839 * 111.00222 * 294.21135 * 12 11 10 14 14 C 1.53034 * 109.52552 * 174.16216 * 13 12 11 15 15 C 1.53123 * 109.28182 * 59.17780 * 14 13 12 16 16 N 1.46887 * 109.52760 * 182.44295 * 15 14 13 17 17 C 1.47477 * 111.00247 * 198.71439 * 16 15 14 18 18 C 1.53515 * 87.93529 * 138.70342 * 17 16 15 19 19 C 1.47480 * 111.00217 * 294.68318 * 16 15 14 20 20 C 1.53120 * 109.16070 * 302.35293 * 15 14 13 21 21 C 1.46849 * 110.99649 * 169.99929 * 12 11 10 22 22 H 0.96996 * 119.99309 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 24 24 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 25 25 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 26 26 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 27 27 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 28 28 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 29 29 H 1.09006 * 109.46266 * 294.17473 * 13 12 11 30 30 H 1.09002 * 109.46276 * 54.14664 * 13 12 11 31 31 H 1.09006 * 109.50444 * 299.24199 * 14 13 12 32 32 H 1.09002 * 109.53860 * 179.13912 * 14 13 12 33 33 H 1.08999 * 109.57140 * 62.27961 * 15 14 13 34 34 H 1.09002 * 113.47853 * 253.46890 * 17 16 15 35 35 H 1.09004 * 113.47928 * 23.93756 * 17 16 15 36 36 H 1.09000 * 114.16949 * 220.32861 * 18 17 16 37 37 H 1.08994 * 114.34149 * 87.63637 * 18 17 16 38 38 H 1.09000 * 113.47800 * 336.06728 * 19 16 15 39 39 H 1.09004 * 113.47972 * 106.46411 * 19 16 15 40 40 H 1.09005 * 109.50142 * 297.71204 * 20 15 14 41 41 H 1.08993 * 109.53791 * 177.61458 * 20 15 14 42 42 H 1.08991 * 109.46839 * 305.85721 * 21 12 11 43 43 H 1.09005 * 109.46224 * 65.84006 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0014 11 6 5.5516 -2.6366 0.0001 12 7 6.0412 -4.0216 0.0009 13 6 5.6876 -4.7041 1.2520 14 6 6.0831 -6.1795 1.1592 15 6 7.5898 -6.2842 0.9071 16 7 7.9659 -7.6964 0.7589 17 6 9.4152 -7.8813 0.9596 18 6 9.0864 -9.1512 1.7571 19 6 7.7541 -8.4347 2.0178 20 6 7.9388 -5.5243 -0.3756 21 6 7.4893 -4.0679 -0.2384 22 1 -0.4849 0.8401 -0.0004 23 1 3.8752 -0.6797 0.8895 24 1 3.8746 -0.6808 -0.8905 25 1 3.6579 -3.1513 -0.8880 26 1 3.6586 -3.1495 0.8919 27 1 5.9142 -2.1238 -0.8908 28 1 5.9156 -2.1217 0.8892 29 1 6.2175 -4.2376 2.0825 30 1 4.6130 -4.6259 1.4172 31 1 5.5432 -6.6501 0.3374 32 1 5.8346 -6.6830 2.0935 33 1 8.1316 -5.8491 1.7469 34 1 9.9600 -8.0774 0.0361 35 1 9.8738 -7.0969 1.5619 36 1 9.6999 -9.2905 2.6472 37 1 8.9974 -10.0522 1.1503 38 1 7.7692 -7.7981 2.9025 39 1 6.8903 -9.0991 1.9916 40 1 7.4279 -5.9845 -1.2215 41 1 9.0159 -5.5591 -0.5383 42 1 7.7234 -3.5276 -1.1555 43 1 8.0108 -3.6046 0.5993 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700414814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:55 Heat of formation + Delta-G solvation = 25.518336 kcal Electronic energy + Delta-G solvation = -18802.963350 eV Core-core repulsion = 16076.455604 eV Total energy + Delta-G solvation = -2726.507746 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.60515 -38.40537 -34.69629 -32.91335 -31.29192 -30.85039 -28.32699 -26.27737 -26.20175 -23.42117 -22.86003 -21.58521 -20.15020 -19.84380 -19.76271 -16.78718 -16.54302 -15.99129 -15.35261 -15.10014 -14.62336 -14.28793 -14.16858 -13.77627 -13.60052 -13.09943 -12.69917 -12.61553 -12.37774 -12.18315 -11.83484 -11.65834 -11.44688 -11.18227 -11.09069 -11.03306 -10.86700 -10.72428 -10.42008 -10.27355 -9.85690 -9.61835 -9.52218 -9.13518 -9.11068 -8.50485 -8.09041 -6.00956 -3.98437 3.32589 3.39573 3.43389 3.70180 4.08742 4.16153 4.47957 4.52825 4.59794 4.78711 4.89647 5.06960 5.12519 5.19521 5.29273 5.32294 5.33290 5.45433 5.48158 5.51674 5.53821 5.59694 5.71675 5.75717 5.80410 5.82920 5.95546 6.00967 6.11478 6.20215 6.21902 6.31195 6.59164 6.62110 6.88327 6.95853 7.30221 7.31961 7.41339 7.51050 7.84042 8.58799 9.04917 9.61827 11.12712 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.053856 B = 0.003490 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.779188 B = 8020.102944 C = 8339.177827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.097 4.097 11 C 0.054 3.946 12 N -0.536 5.536 13 C 0.055 3.945 14 C -0.107 4.107 15 C 0.050 3.950 16 N -0.467 5.467 17 C -0.003 4.003 18 C -0.148 4.148 19 C -0.002 4.002 20 C -0.102 4.102 21 C 0.056 3.944 22 H 0.262 0.738 23 H 0.012 0.988 24 H 0.011 0.989 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.420 -15.021 3.736 25.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.135 4.135 11 C -0.073 4.073 12 N -0.261 5.261 13 C -0.074 4.074 14 C -0.145 4.145 15 C -0.059 4.059 16 N -0.189 5.189 17 C -0.132 4.132 18 C -0.186 4.186 19 C -0.131 4.131 20 C -0.140 4.140 21 C -0.072 4.072 22 H 0.072 0.928 23 H 0.031 0.969 24 H 0.029 0.971 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 19.696 -15.326 2.723 25.105 hybrid contribution 1.094 1.850 1.431 2.582 sum 20.790 -13.477 4.154 25.121 Atomic orbital electron populations 1.69924 1.06292 1.26795 1.51440 1.25045 0.94732 0.99160 0.94683 0.86765 0.80299 0.83648 0.78477 1.20296 1.21462 1.19115 1.21158 0.89540 0.94450 1.50407 0.91019 1.19554 0.97146 0.92390 0.96033 1.21480 0.90970 0.99449 1.01630 1.22304 0.98054 0.86876 1.00069 1.61965 1.12527 1.16975 1.34631 1.22113 1.01908 0.93322 0.90054 1.21599 0.94263 0.96447 1.02204 1.22308 0.97014 0.89089 0.97444 1.69005 1.08450 1.10540 1.30918 1.23759 0.91881 0.97225 1.00345 1.23111 0.97158 0.97866 1.00426 1.23714 0.99015 0.97587 0.92810 1.21507 1.00105 0.94538 0.97876 1.22054 0.88446 0.96267 1.00467 0.92803 0.96939 0.97088 0.91940 0.92870 0.91219 0.95512 0.95527 0.89444 0.90096 0.91949 0.93980 0.89868 0.91613 0.90887 0.88954 0.91522 0.89713 0.90147 0.92150 0.90600 0.95590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.43 13.96 55.43 0.77 -27.65 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 8 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -1.99 5.08 -26.73 -0.14 -2.12 16 11 C 0.05 0.91 4.96 -3.82 -0.02 0.90 16 12 N -0.54 -8.03 4.66 -234.67 -1.09 -9.12 16 13 C 0.05 0.76 5.29 -3.84 -0.02 0.74 16 14 C -0.11 -1.28 5.32 -26.65 -0.14 -1.43 16 15 C 0.05 0.55 1.61 -67.59 -0.11 0.44 16 16 N -0.47 -4.76 6.13 -236.51 -1.45 -6.21 16 17 C 0.00 -0.02 7.29 -7.56 -0.06 -0.08 16 18 C -0.15 -1.03 8.47 -26.20 -0.22 -1.25 16 19 C 0.00 -0.02 6.62 -7.56 -0.05 -0.07 16 20 C -0.10 -1.15 5.52 -26.65 -0.15 -1.29 16 21 C 0.06 0.71 5.46 -3.83 -0.02 0.68 16 22 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 23 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 24 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 25 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.05 1.08 6.43 -51.93 -0.33 0.75 16 27 H 0.07 1.14 7.99 -51.93 -0.41 0.73 16 28 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 1.32 6.21 -51.93 -0.32 0.99 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.67 7.44 -51.93 -0.39 0.29 16 33 H 0.04 0.46 7.56 -51.93 -0.39 0.07 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.51 7.62 -51.93 -0.40 0.11 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.54 7.84 -51.93 -0.41 0.13 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.60 7.91 -51.93 -0.41 0.19 16 42 H 0.08 0.91 8.01 -51.93 -0.42 0.50 16 43 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 327.27 15.07 4.93 4.93 Total: -1.00 -30.90 327.27 -11.03 -41.94 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -8.06 Total: -3.78 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -1.46 Total: -17.53 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: -1.77 Total: -42.98 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.90 -11.03 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700414814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.455 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds