Wall clock time and date at job start Mon Mar 30 2020 03:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47367 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47229 * 179.97438 * 12 11 10 14 14 C 1.46902 * 110.99935 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47073 * 180.02562 * 14 13 12 16 16 H 1.09003 * 112.74799 * 74.67093 * 15 14 13 17 17 C 1.53513 * 113.47590 * 205.43475 * 15 14 13 18 18 C 1.53638 * 83.53376 * 140.77572 * 17 15 14 19 19 N 1.47480 * 87.95221 * 334.02332 * 18 17 15 20 20 C 1.46900 * 111.00014 * 138.64892 * 19 18 17 21 21 C 1.53003 * 117.49525 * 152.65163 * 20 19 18 22 22 C 1.53001 * 117.49324 * 84.03334 * 20 19 18 23 23 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 25 25 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 26 26 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 27 27 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 28 28 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 29 29 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 30 30 H 1.08998 * 109.47065 * 300.00398 * 12 11 10 31 31 H 1.09001 * 109.46892 * 60.00134 * 12 11 10 32 32 H 1.00906 * 110.99537 * 56.05184 * 13 12 11 33 33 H 1.09003 * 109.47131 * 300.00041 * 14 13 12 34 34 H 1.08997 * 109.47455 * 60.00107 * 14 13 12 35 35 H 1.08995 * 114.17300 * 254.43717 * 17 15 14 36 36 H 1.08996 * 114.17046 * 27.14645 * 17 15 14 37 37 H 1.09003 * 113.51132 * 219.24473 * 18 17 15 38 38 H 1.09000 * 113.42333 * 88.79425 * 18 17 15 39 39 H 1.08994 * 115.55261 * 298.36721 * 20 19 18 40 40 H 1.08995 * 117.50167 * 0.02562 * 21 20 19 41 41 H 1.09003 * 117.49528 * 145.02568 * 21 20 19 42 42 H 1.08999 * 117.49909 * 214.97655 * 22 20 19 43 43 H 1.08994 * 117.50495 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0079 12 6 2.4744 -6.1501 0.0048 13 7 1.7399 -7.4222 0.0104 14 6 2.6644 -8.5639 0.0081 15 6 1.8643 -9.8680 0.0135 16 1 1.4132 -10.0897 -0.9538 17 6 2.6309 -11.0533 0.6167 18 6 1.2641 -11.4040 1.2244 19 7 0.9188 -9.9726 1.1405 20 6 -0.4658 -9.7909 0.6846 21 6 -1.1942 -8.5203 1.1272 22 6 -1.5725 -9.8711 1.7380 23 1 -0.4850 0.8401 0.0004 24 1 0.6281 -2.5552 0.8979 25 1 0.6206 -2.5586 -0.8820 26 1 2.8678 -3.6059 -0.8902 27 1 2.8760 -3.6028 0.8897 28 1 0.8573 -5.0435 0.9006 29 1 0.8498 -5.0461 -0.8793 30 1 3.0970 -6.0934 -0.8882 31 1 3.1052 -6.0912 0.8918 32 1 1.0996 -7.4734 -0.7678 33 1 3.2883 -8.5244 -0.8848 34 1 3.2964 -8.5214 0.8951 35 1 2.9908 -11.7728 -0.1186 36 1 3.3858 -10.7698 1.3500 37 1 1.3255 -11.7766 2.2469 38 1 0.6531 -12.0366 0.5805 39 1 -0.6882 -10.1786 -0.3095 40 1 -0.6460 -7.8190 1.7562 41 1 -1.8960 -8.0717 0.4240 42 1 -2.5232 -10.3111 1.4368 43 1 -1.2734 -10.0591 2.7691 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701155296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:40 Heat of formation + Delta-G solvation = 41.576670 kcal Electronic energy + Delta-G solvation = -18288.008213 eV Core-core repulsion = 15562.196809 eV Total energy + Delta-G solvation = -2725.811404 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.44372 -36.58172 -36.01272 -33.98646 -32.09260 -29.28324 -28.17129 -26.75543 -24.16758 -22.70977 -21.99500 -21.34933 -21.23235 -20.03792 -19.76650 -16.83189 -16.21214 -15.79397 -15.48304 -15.00229 -14.56365 -14.43622 -14.11966 -13.67046 -13.34755 -13.28797 -12.54989 -12.24753 -11.91998 -11.72154 -11.56575 -11.46255 -11.38511 -11.30969 -10.95266 -10.74528 -10.48182 -10.41186 -10.36303 -10.29574 -10.01939 -9.56935 -9.20969 -9.00067 -8.91002 -8.29147 -8.18889 -5.94181 -3.96150 3.35125 3.41052 3.44873 3.67280 3.71160 4.14429 4.36397 4.50820 4.70321 4.86581 4.90407 4.96476 5.05861 5.10657 5.30619 5.36539 5.40122 5.41217 5.51971 5.56191 5.62029 5.65215 5.74864 5.78013 5.95530 6.00213 6.06465 6.12294 6.23864 6.32915 6.34911 6.59079 6.90210 7.03967 7.04219 7.14970 7.32349 7.55055 7.75599 7.92227 8.07505 8.50491 9.11492 9.67425 11.17201 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.036236 B = 0.003218 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.536236 B = 8698.064127 C = 9324.132419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.113 4.113 12 C 0.061 3.939 13 N -0.676 5.676 14 C 0.077 3.923 15 C 0.034 3.966 16 H 0.072 0.928 17 C -0.142 4.142 18 C -0.004 4.004 19 N -0.419 5.419 20 C -0.029 4.029 21 C -0.141 4.141 22 C -0.176 4.176 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.014 0.986 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.022 0.978 31 H 0.067 0.933 32 H 0.334 0.666 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 -24.368 0.054 24.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.151 4.151 12 C -0.068 4.068 13 N -0.306 5.306 14 C -0.053 4.053 15 C -0.076 4.076 16 H 0.090 0.910 17 C -0.180 4.180 18 C -0.132 4.132 19 N -0.141 5.141 20 C -0.138 4.138 21 C -0.178 4.178 22 C -0.214 4.214 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.032 0.968 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.151 0.849 33 H 0.045 0.955 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.437 -23.799 1.332 23.880 hybrid contribution 0.491 0.479 -1.757 1.886 sum 1.927 -23.320 -0.425 23.403 Atomic orbital electron populations 1.69973 1.06036 1.26466 1.51112 1.25038 0.94846 0.99210 0.95472 0.86613 0.79877 0.83593 0.78031 1.20738 1.21238 1.19897 1.21303 0.93015 0.91258 1.50206 0.92798 1.19087 0.94031 0.91345 0.97111 1.21588 0.99065 0.94076 0.99981 1.21604 0.97841 0.93807 1.01838 1.22061 0.96159 0.88806 0.99799 1.60417 1.19192 1.01165 1.49794 1.21863 0.93920 0.89217 1.00268 1.23405 0.94458 0.95406 0.94332 0.91002 1.23248 0.97009 0.97327 1.00445 1.23696 0.95714 0.92038 1.01798 1.68813 1.01638 1.13467 1.30193 1.22943 0.88989 1.05248 0.96627 1.22912 1.01217 0.90683 1.02980 1.22968 0.97659 1.02321 0.98406 0.93083 0.96615 0.96790 0.93802 0.93492 0.91677 0.92983 0.96012 0.91407 0.84911 0.95480 0.90623 0.90785 0.88725 0.89889 0.91752 0.90001 0.87201 0.89137 0.89265 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 11 C -0.11 -1.99 5.47 -26.73 -0.15 -2.14 16 12 C 0.06 0.89 5.69 -3.83 -0.02 0.87 16 13 N -0.68 -8.68 6.39 -113.78 -0.73 -9.40 16 14 C 0.08 0.84 5.81 -3.82 -0.02 0.82 16 15 C 0.03 0.32 3.31 -71.43 -0.24 0.08 16 16 H 0.07 0.65 7.70 -51.93 -0.40 0.25 16 17 C -0.14 -1.09 8.01 -26.13 -0.21 -1.30 16 18 C 0.00 -0.03 7.72 -7.48 -0.06 -0.09 16 19 N -0.42 -4.44 6.25 -228.30 -1.43 -5.87 16 20 C -0.03 -0.30 4.83 -67.71 -0.33 -0.62 16 21 C -0.14 -1.58 10.46 -26.73 -0.28 -1.86 16 22 C -0.18 -1.73 10.46 -26.73 -0.28 -2.01 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.33 4.15 8.73 -39.29 -0.34 3.81 16 33 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.88 7.90 -51.93 -0.41 0.47 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.74 7.95 -51.93 -0.41 0.33 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.49 7.91 -51.93 -0.41 0.08 16 39 H 0.08 0.79 7.82 -51.93 -0.41 0.39 16 40 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 349.42 15.07 5.27 5.27 Total: -1.00 -30.62 349.42 -11.71 -42.32 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.27 Total: -0.29 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -2.27 Total: -22.25 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -1.42 Total: -42.15 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.62 -11.71 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701155296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.901 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds