Wall clock time and date at job start Mon Mar 30 2020 04:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46891 * 2 1 4 4 H 1.08996 * 109.47291 * 302.21709 * 3 2 1 5 5 C 1.50703 * 109.47240 * 182.21094 * 3 2 1 6 6 H 1.07990 * 120.00059 * 239.99879 * 5 3 2 7 7 C 1.37874 * 119.99459 * 60.00248 * 5 3 2 8 8 N 1.31517 * 120.00572 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99757 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47361 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47006 * 119.99904 * 9 7 5 12 12 H 1.48501 * 109.47009 * 239.99732 * 9 7 5 13 13 N 1.46907 * 109.47143 * 62.21284 * 3 2 1 14 14 C 1.46850 * 110.99948 * 60.65321 * 13 3 2 15 15 C 1.53032 * 109.51651 * 185.84621 * 14 13 3 16 16 C 1.53124 * 109.27658 * 300.80602 * 15 14 13 17 17 C 1.53119 * 109.15284 * 57.66779 * 16 15 14 18 18 H 1.08996 * 109.49899 * 62.28333 * 17 16 15 19 19 N 1.46905 * 109.50093 * 182.40086 * 17 16 15 20 20 C 1.47483 * 110.99860 * 198.83388 * 19 17 16 21 21 C 1.53517 * 87.93104 * 138.70120 * 20 19 17 22 22 C 1.47482 * 110.99945 * 294.80527 * 19 17 16 23 23 C 1.46845 * 111.00013 * 184.85960 * 13 3 2 24 24 H 1.09001 * 109.47285 * 294.69644 * 1 2 3 25 25 H 1.08998 * 109.47083 * 54.70077 * 1 2 3 26 26 H 1.09007 * 109.46784 * 174.69825 * 1 2 3 27 27 H 1.08995 * 109.47445 * 240.00028 * 2 1 3 28 28 H 1.08998 * 109.47067 * 119.99302 * 2 1 3 29 29 H 0.97001 * 120.00394 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.45961 * 305.85833 * 14 13 3 31 31 H 1.09005 * 109.46189 * 65.83108 * 14 13 3 32 32 H 1.09002 * 109.50597 * 60.75381 * 15 14 13 33 33 H 1.08999 * 109.50482 * 180.87509 * 15 14 13 34 34 H 1.09002 * 109.53185 * 297.76440 * 16 15 14 35 35 H 1.09003 * 109.51879 * 177.57118 * 16 15 14 36 36 H 1.08996 * 113.47035 * 253.47162 * 20 19 17 37 37 H 1.09002 * 113.47381 * 23.93655 * 20 19 17 38 38 H 1.08991 * 114.16644 * 220.32527 * 21 20 19 39 39 H 1.08999 * 114.33733 * 87.63297 * 21 20 19 40 40 H 1.09001 * 113.47592 * 336.06209 * 22 19 17 41 41 H 1.08996 * 113.48038 * 106.52903 * 22 19 17 42 42 H 1.08997 * 109.46543 * 294.17857 * 23 13 3 43 43 H 1.09001 * 109.45818 * 54.14949 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6445 1.9677 -0.8694 5 6 3.5460 1.4430 -0.0548 6 1 4.1151 1.9003 0.7409 7 6 4.1971 0.8595 -1.1209 8 7 3.5040 0.3022 -2.0898 9 14 6.0638 0.8607 -1.1893 10 1 6.6028 1.5450 0.0133 11 1 6.5587 -0.5390 -1.2252 12 1 6.5140 1.5763 -2.4102 13 7 1.5944 2.1194 1.2253 14 6 2.1220 1.4471 2.4195 15 6 1.5226 2.0874 3.6735 16 6 1.8820 3.5756 3.7023 17 6 1.3634 4.2424 2.4252 18 1 0.2769 4.1639 2.3892 19 7 1.7541 5.6585 2.4180 20 6 0.9256 6.4306 1.4732 21 6 0.8666 7.5478 2.5244 22 6 1.0934 6.3947 3.5120 23 6 1.9673 3.5396 1.2073 24 1 -0.3634 0.4294 0.9337 25 1 -0.3633 0.5938 -0.8387 26 1 -0.3633 -1.0234 -0.0950 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.9621 -0.1086 -2.8396 30 1 1.8560 0.3904 2.3887 31 1 3.2071 1.5479 2.4435 32 1 0.4385 1.9750 3.6569 33 1 1.9261 1.5985 4.5602 34 1 2.9647 3.6880 3.7581 35 1 1.4209 4.0449 4.5714 36 1 1.4555 6.7166 0.5647 37 1 -0.0429 5.9731 1.2709 38 1 -0.1087 8.0261 2.6130 39 1 1.6913 8.2586 2.4713 40 1 0.1697 5.9277 3.8537 41 1 1.7653 6.6503 4.3312 42 1 3.0531 3.6305 1.2369 43 1 1.5889 4.0029 0.2961 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702299974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:51 Heat of formation + Delta-G solvation = 32.042172 kcal Electronic energy + Delta-G solvation = -20059.831884 eV Core-core repulsion = 17333.607032 eV Total energy + Delta-G solvation = -2726.224851 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.15074 -37.89179 -34.51194 -31.90337 -30.78463 -30.55687 -26.70893 -26.40576 -25.77350 -23.63495 -22.11583 -21.86248 -19.85719 -19.46207 -18.79575 -16.34871 -15.98166 -15.56779 -14.99861 -14.39962 -14.28399 -14.02055 -13.40399 -13.23260 -12.67982 -12.63668 -12.40703 -12.26320 -11.84266 -11.74344 -11.30202 -11.18042 -10.95165 -10.80681 -10.75356 -10.69610 -10.51016 -10.37455 -10.11022 -9.99846 -9.67686 -9.55221 -9.24276 -9.01793 -8.66081 -8.33802 -7.07074 -5.95846 -4.08803 3.27724 3.36346 3.40672 4.10690 4.42570 4.51370 4.91704 5.06801 5.11255 5.28163 5.34507 5.44390 5.48777 5.56441 5.69310 5.76356 5.81804 5.86837 6.00109 6.05128 6.15685 6.27292 6.33369 6.37786 6.40191 6.46215 6.49352 6.62661 6.68507 6.78956 6.84263 6.95106 7.11819 7.20989 7.30136 7.39743 7.65936 7.79274 8.02054 8.20074 8.37783 8.50911 9.01631 9.58731 11.03231 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020868 B = 0.006783 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.449843 B = 4126.927438 C = 4615.496117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.215 3.785 4 H 0.037 0.963 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.534 5.534 14 C 0.059 3.941 15 C -0.115 4.115 16 C -0.107 4.107 17 C 0.054 3.946 18 H 0.049 0.951 19 N -0.468 5.468 20 C 0.000 4.000 21 C -0.148 4.148 22 C 0.000 4.000 23 C 0.080 3.920 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.024 0.976 27 H 0.092 0.908 28 H 0.034 0.966 29 H 0.260 0.740 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.092 8.278 9.353 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.109 3.891 4 H 0.055 0.945 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.526 5.526 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.259 5.259 14 C -0.069 4.069 15 C -0.154 4.154 16 C -0.145 4.145 17 C -0.055 4.055 18 H 0.067 0.933 19 N -0.191 5.191 20 C -0.129 4.129 21 C -0.186 4.186 22 C -0.130 4.130 23 C -0.049 4.049 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.110 0.890 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.845 8.093 9.121 13.522 hybrid contribution 1.118 -0.165 -0.132 1.138 sum -4.727 7.928 8.988 12.884 Atomic orbital electron populations 1.21694 0.98870 0.98288 1.00516 1.21627 0.92159 0.99202 1.02046 1.19262 0.92641 0.90842 0.86338 0.94511 1.21782 0.92733 1.36961 1.06404 0.92527 1.24901 0.97913 0.95086 0.95530 1.69884 1.34860 1.37808 1.09999 0.86640 0.86373 0.77660 0.77957 1.19927 1.21037 1.21039 1.62358 1.58851 1.00904 1.03751 1.21923 0.97403 0.98235 0.89360 1.21615 1.00954 0.94734 0.98080 1.21538 1.01280 0.95785 0.95907 1.22309 0.97880 0.88290 0.97033 0.93297 1.68944 1.43797 1.02417 1.03934 1.23726 0.97200 0.94355 0.97637 1.23113 1.02044 0.96524 0.96929 1.23673 0.98265 0.94768 0.96262 1.21635 0.98702 0.89565 0.94981 0.93604 0.94205 0.95655 0.89008 0.94740 0.93006 0.91129 0.94537 0.92097 0.92454 0.91752 0.93126 0.89876 0.91373 0.91129 0.89223 0.91731 0.90274 0.93834 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.70 37.16 0.36 -2.41 16 2 C -0.11 -2.65 4.97 -26.73 -0.13 -2.78 16 3 C 0.22 5.32 1.78 -68.86 -0.12 5.20 16 4 H 0.04 1.02 8.08 -51.93 -0.42 0.60 16 5 C -0.54 -14.54 7.19 -34.44 -0.25 -14.79 16 6 H 0.06 1.56 5.84 -52.49 -0.31 1.25 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 8 N -0.89 -25.06 11.30 55.43 0.63 -24.44 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.53 -11.31 4.08 -228.08 -0.93 -12.24 16 14 C 0.06 1.16 4.80 -3.84 -0.02 1.15 16 15 C -0.12 -1.83 6.09 -26.65 -0.16 -1.99 16 16 C -0.11 -1.66 5.23 -26.61 -0.14 -1.79 16 17 C 0.05 0.88 1.71 -67.63 -0.12 0.77 16 18 H 0.05 0.81 7.56 -51.93 -0.39 0.42 16 19 N -0.47 -6.99 6.13 -236.50 -1.45 -8.44 16 20 C 0.00 0.00 7.26 -7.53 -0.05 -0.06 16 21 C -0.15 -1.55 8.47 -26.20 -0.22 -1.77 16 22 C 0.00 0.00 6.62 -7.54 -0.05 -0.05 16 23 C 0.08 1.61 4.55 -3.84 -0.02 1.60 16 24 H 0.04 0.89 7.83 -51.93 -0.41 0.48 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 2.43 6.01 -51.93 -0.31 2.12 16 28 H 0.03 0.80 6.18 -51.93 -0.32 0.48 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.07 1.42 5.98 -51.93 -0.31 1.10 16 31 H 0.04 0.79 6.63 -51.93 -0.34 0.45 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.68 7.44 -51.93 -0.39 0.30 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 0.87 7.62 -51.93 -0.40 0.48 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.73 7.84 -51.93 -0.41 0.32 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.04 0.99 6.96 -51.93 -0.36 0.63 16 43 H 0.06 1.23 7.81 -51.93 -0.41 0.83 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -27.58 319.42 -10.69 -38.27 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -7.71 Total: 0.80 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -1.02 Total: -15.18 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -1.75 Total: -45.11 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.58 -10.69 -38.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702299974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.311 kcal (2) G-P(sol) polarization free energy of solvation -27.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds