Wall clock time and date at job start Mon Mar 30 2020 04:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46891 * 2 1 4 4 H 1.08996 * 109.47291 * 302.21709 * 3 2 1 5 5 C 1.50703 * 109.47240 * 182.21094 * 3 2 1 6 6 H 1.07990 * 120.00059 * 239.99879 * 5 3 2 7 7 C 1.37874 * 119.99459 * 60.00248 * 5 3 2 8 8 N 1.31517 * 120.00572 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99757 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47361 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47006 * 119.99904 * 9 7 5 12 12 H 1.48501 * 109.47009 * 239.99732 * 9 7 5 13 13 N 1.46907 * 109.47143 * 62.21284 * 3 2 1 14 14 C 1.46850 * 110.99948 * 60.65321 * 13 3 2 15 15 C 1.53032 * 109.51651 * 185.84621 * 14 13 3 16 16 C 1.53124 * 109.27658 * 300.80602 * 15 14 13 17 17 C 1.53119 * 109.15284 * 57.66779 * 16 15 14 18 18 H 1.08996 * 109.49899 * 62.28333 * 17 16 15 19 19 N 1.46905 * 109.50093 * 182.40086 * 17 16 15 20 20 C 1.47483 * 110.99860 * 198.83388 * 19 17 16 21 21 C 1.53517 * 87.93104 * 138.70120 * 20 19 17 22 22 C 1.47482 * 110.99945 * 294.80527 * 19 17 16 23 23 C 1.46845 * 111.00013 * 184.85960 * 13 3 2 24 24 H 1.09001 * 109.47285 * 294.69644 * 1 2 3 25 25 H 1.08998 * 109.47083 * 54.70077 * 1 2 3 26 26 H 1.09007 * 109.46784 * 174.69825 * 1 2 3 27 27 H 1.08995 * 109.47445 * 240.00028 * 2 1 3 28 28 H 1.08998 * 109.47067 * 119.99302 * 2 1 3 29 29 H 0.97001 * 120.00394 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.45961 * 305.85833 * 14 13 3 31 31 H 1.09005 * 109.46189 * 65.83108 * 14 13 3 32 32 H 1.09002 * 109.50597 * 60.75381 * 15 14 13 33 33 H 1.08999 * 109.50482 * 180.87509 * 15 14 13 34 34 H 1.09002 * 109.53185 * 297.76440 * 16 15 14 35 35 H 1.09003 * 109.51879 * 177.57118 * 16 15 14 36 36 H 1.08996 * 113.47035 * 253.47162 * 20 19 17 37 37 H 1.09002 * 113.47381 * 23.93655 * 20 19 17 38 38 H 1.08991 * 114.16644 * 220.32527 * 21 20 19 39 39 H 1.08999 * 114.33733 * 87.63297 * 21 20 19 40 40 H 1.09001 * 113.47592 * 336.06209 * 22 19 17 41 41 H 1.08996 * 113.48038 * 106.52903 * 22 19 17 42 42 H 1.08997 * 109.46543 * 294.17857 * 23 13 3 43 43 H 1.09001 * 109.45818 * 54.14949 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6445 1.9677 -0.8694 5 6 3.5460 1.4430 -0.0548 6 1 4.1151 1.9003 0.7409 7 6 4.1971 0.8595 -1.1209 8 7 3.5040 0.3022 -2.0898 9 14 6.0638 0.8607 -1.1893 10 1 6.6028 1.5450 0.0133 11 1 6.5587 -0.5390 -1.2252 12 1 6.5140 1.5763 -2.4102 13 7 1.5944 2.1194 1.2253 14 6 2.1220 1.4471 2.4195 15 6 1.5226 2.0874 3.6735 16 6 1.8820 3.5756 3.7023 17 6 1.3634 4.2424 2.4252 18 1 0.2769 4.1639 2.3892 19 7 1.7541 5.6585 2.4180 20 6 0.9256 6.4306 1.4732 21 6 0.8666 7.5478 2.5244 22 6 1.0934 6.3947 3.5120 23 6 1.9673 3.5396 1.2073 24 1 -0.3634 0.4294 0.9337 25 1 -0.3633 0.5938 -0.8387 26 1 -0.3633 -1.0234 -0.0950 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.9621 -0.1086 -2.8396 30 1 1.8560 0.3904 2.3887 31 1 3.2071 1.5479 2.4435 32 1 0.4385 1.9750 3.6569 33 1 1.9261 1.5985 4.5602 34 1 2.9647 3.6880 3.7581 35 1 1.4209 4.0449 4.5714 36 1 1.4555 6.7166 0.5647 37 1 -0.0429 5.9731 1.2709 38 1 -0.1087 8.0261 2.6130 39 1 1.6913 8.2586 2.4713 40 1 0.1697 5.9277 3.8537 41 1 1.7653 6.6503 4.3312 42 1 3.0531 3.6305 1.2369 43 1 1.5889 4.0029 0.2961 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702299974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:51 Heat of formation + Delta-G solvation = 13.967792 kcal Electronic energy + Delta-G solvation = -20060.615648 eV Core-core repulsion = 17333.607032 eV Total energy + Delta-G solvation = -2727.008615 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.31524 -39.45179 -36.19979 -33.87718 -32.37253 -31.99625 -28.57011 -27.64360 -26.93081 -25.42542 -23.74637 -23.30405 -21.15731 -20.74180 -20.51551 -18.30672 -17.46829 -16.64736 -16.61535 -16.14915 -15.71159 -15.33711 -15.06545 -14.92527 -14.44829 -13.95758 -13.81462 -13.54659 -13.22032 -13.16566 -13.08409 -12.85996 -12.77340 -12.50811 -12.15782 -12.09445 -11.99101 -11.70337 -11.65898 -11.58540 -11.54455 -11.10880 -10.99004 -10.79385 -10.44905 -9.76071 -8.94748 -8.05303 -6.27808 1.32197 1.35164 1.45201 2.37450 2.95978 3.12625 3.49820 3.63697 3.85260 3.92131 4.11895 4.18422 4.34131 4.44308 4.52830 4.53335 4.61031 4.69022 4.72981 4.73861 4.83862 4.88889 4.96063 4.97026 5.00987 5.04463 5.09716 5.13745 5.16193 5.27918 5.32281 5.40878 5.44221 5.49908 5.51951 5.62355 5.78253 6.05615 6.17816 6.21101 6.38066 6.68641 6.93424 7.42802 8.89526 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020868 B = 0.006783 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.449843 B = 4126.927438 C = 4615.496117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 C 0.221 3.779 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.043 0.957 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.944 3.056 10 H -0.276 1.276 11 H -0.276 1.276 12 H -0.280 1.280 13 N -0.527 5.527 14 C 0.060 3.940 15 C -0.106 4.106 16 C -0.102 4.102 17 C 0.066 3.934 18 H 0.054 0.946 19 N -0.495 5.495 20 C -0.009 4.009 21 C -0.130 4.130 22 C 0.002 3.998 23 C 0.087 3.913 24 H 0.057 0.943 25 H 0.032 0.968 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.262 0.738 30 H 0.066 0.934 31 H 0.008 0.992 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.008 0.992 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 9.056 11.438 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.144 4.144 3 C 0.113 3.887 4 H 0.017 0.983 5 C -0.588 4.588 6 H 0.061 0.939 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.202 1.202 12 H -0.206 1.206 13 N -0.251 5.251 14 C -0.068 4.068 15 C -0.144 4.144 16 C -0.140 4.140 17 C -0.043 4.043 18 H 0.072 0.928 19 N -0.218 5.218 20 C -0.138 4.138 21 C -0.167 4.167 22 C -0.127 4.127 23 C -0.042 4.042 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.027 0.973 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.026 0.974 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.767 8.879 11.219 15.827 hybrid contribution 1.412 -0.373 -0.811 1.671 sum -5.354 8.506 10.409 14.469 Atomic orbital electron populations 1.21549 0.96043 0.99681 1.00812 1.21455 0.94624 0.97839 1.00496 1.19040 0.91358 0.91494 0.86770 0.98296 1.21961 0.94093 1.36671 1.06085 0.93873 1.25580 1.01881 0.94955 0.95335 1.70000 1.36284 1.38306 1.10380 0.85726 0.81643 0.77869 0.77723 1.20125 1.20174 1.20627 1.62338 1.58309 1.01340 1.03097 1.21972 0.95977 0.98397 0.90467 1.21566 1.01456 0.94839 0.96539 1.21512 1.00459 0.95589 0.96442 1.22113 0.97566 0.89291 0.95300 0.92814 1.68941 1.45140 1.01560 1.06201 1.23817 0.96753 0.95498 0.97764 1.23054 1.03570 0.95660 0.94443 1.23761 0.98598 0.94474 0.95824 1.21564 0.96647 0.89322 0.96634 0.92394 0.94924 0.93477 0.92001 0.94706 0.92873 0.91551 0.97344 0.90827 0.89986 0.93380 0.89973 0.91144 0.91213 0.88664 0.88822 0.90523 0.89394 0.97357 0.94092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.70 71.98 0.70 -4.25 16 2 C -0.11 -5.10 4.97 30.60 0.15 -4.95 16 3 C 0.22 11.34 1.78 44.17 0.08 11.42 16 4 H 0.00 -0.05 8.08 -2.39 -0.02 -0.07 16 5 C -0.55 -30.78 7.19 25.60 0.18 -30.60 16 6 H 0.04 2.49 5.84 -2.92 -0.02 2.48 16 7 C 0.02 1.26 5.30 84.65 0.45 1.71 16 8 N -0.91 -52.91 11.30 21.45 0.24 -52.67 16 9 Si 0.94 44.95 29.54 68.60 2.03 46.98 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 N -0.53 -22.76 4.08 -875.50 -3.57 -26.32 16 14 C 0.06 2.36 4.80 86.32 0.41 2.77 16 15 C -0.11 -3.10 6.09 30.65 0.19 -2.92 16 16 C -0.10 -2.93 5.23 30.68 0.16 -2.77 16 17 C 0.07 2.11 1.71 44.97 0.08 2.19 16 18 H 0.05 1.67 7.56 -2.39 -0.02 1.65 16 19 N -0.50 -14.21 6.13 -902.15 -5.53 -19.74 16 20 C -0.01 -0.23 7.26 83.58 0.61 0.38 16 21 C -0.13 -2.34 8.47 30.94 0.26 -2.08 16 22 C 0.00 0.04 6.62 83.58 0.55 0.59 16 23 C 0.09 3.64 4.55 86.33 0.39 4.03 16 24 H 0.06 2.16 7.83 -2.39 -0.02 2.14 16 25 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.06 3.37 6.01 -2.39 -0.01 3.36 16 28 H 0.03 1.64 6.18 -2.39 -0.01 1.62 16 29 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.07 2.63 5.98 -2.38 -0.01 2.62 16 31 H 0.01 0.37 6.63 -2.38 -0.02 0.35 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.89 7.44 -2.39 -0.02 1.87 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.07 1.71 7.62 -2.39 -0.02 1.69 16 38 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.08 1.42 7.84 -2.39 -0.02 1.40 16 41 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.01 0.39 6.96 -2.39 -0.02 0.38 16 43 H 0.04 1.80 7.81 -2.39 -0.02 1.78 16 Total: -1.00 -61.56 319.42 -1.66 -63.22 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.95 Total: 13.02 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 4.22 Total: -24.48 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -8.86 Total: -98.73 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -61.56 -1.66 -63.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702299974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.188 kcal (2) G-P(sol) polarization free energy of solvation -61.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds