Wall clock time and date at job start Mon Mar 30 2020 04:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47393 * 2 1 4 4 H 1.08994 * 109.46964 * 183.02208 * 3 2 1 5 5 C 1.50699 * 109.47030 * 63.01789 * 3 2 1 6 6 H 1.08000 * 120.00374 * 245.12166 * 5 3 2 7 7 C 1.37884 * 119.99529 * 65.12624 * 5 3 2 8 8 N 1.31507 * 120.00419 * 8.54321 * 7 5 3 9 9 Si 1.86801 * 119.99743 * 188.54579 * 7 5 3 10 10 H 1.48500 * 109.47183 * 270.00007 * 9 7 5 11 11 H 1.48497 * 109.47064 * 149.99867 * 9 7 5 12 12 H 1.48499 * 109.47020 * 29.99900 * 9 7 5 13 13 N 1.46897 * 109.46864 * 303.02184 * 3 2 1 14 14 C 1.46852 * 111.00040 * 301.10999 * 13 3 2 15 15 C 1.53037 * 109.52235 * 174.16024 * 14 13 3 16 16 C 1.53120 * 109.27805 * 59.18142 * 15 14 13 17 17 C 1.53127 * 109.16077 * 302.34318 * 16 15 14 18 18 H 1.09000 * 109.53238 * 297.69371 * 17 16 15 19 19 N 1.46895 * 109.50114 * 177.59511 * 17 16 15 20 20 C 1.47479 * 111.00043 * 75.98985 * 19 17 16 21 21 C 1.53519 * 87.93249 * 138.69791 * 20 19 17 22 22 C 1.47486 * 110.99653 * 171.95883 * 19 17 16 23 23 C 1.46850 * 111.00082 * 176.89922 * 13 3 2 24 24 H 1.08997 * 109.47074 * 64.05008 * 1 2 3 25 25 H 1.09000 * 109.47541 * 184.04888 * 1 2 3 26 26 H 1.09001 * 109.47055 * 304.05113 * 1 2 3 27 27 H 1.09002 * 109.47272 * 239.99684 * 2 1 3 28 28 H 1.09000 * 109.46977 * 120.00014 * 2 1 3 29 29 H 0.97006 * 119.99697 * 357.51591 * 8 7 5 30 30 H 1.09000 * 109.46171 * 294.17857 * 14 13 3 31 31 H 1.08998 * 109.46036 * 54.14840 * 14 13 3 32 32 H 1.09000 * 109.50426 * 299.23900 * 15 14 13 33 33 H 1.08996 * 109.50297 * 179.11941 * 15 14 13 34 34 H 1.09000 * 109.52729 * 182.44209 * 16 15 14 35 35 H 1.09002 * 109.52628 * 62.24796 * 16 15 14 36 36 H 1.08997 * 113.47424 * 253.46258 * 20 19 17 37 37 H 1.09002 * 113.47672 * 23.93890 * 20 19 17 38 38 H 1.08996 * 114.17026 * 220.32925 * 21 20 19 39 39 H 1.09002 * 114.34204 * 87.63488 * 21 20 19 40 40 H 1.08995 * 113.47788 * 336.06504 * 22 19 17 41 41 H 1.09003 * 113.47332 * 106.52937 * 22 19 17 42 42 H 1.08999 * 109.45981 * 305.85750 * 23 13 3 43 43 H 1.09000 * 109.45944 * 65.82916 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1286 1.4429 -0.0542 5 6 1.5997 2.1310 1.2662 6 1 0.9088 2.9597 1.2181 7 6 2.0791 1.7029 2.4861 8 7 3.0435 0.8103 2.5372 9 14 1.3584 2.3907 4.0662 10 1 2.1186 3.6002 4.4717 11 1 1.4485 1.3670 5.1381 12 1 -0.0650 2.7518 3.8450 13 7 1.4917 2.1557 -1.1613 14 6 1.8792 1.4964 -2.4149 15 6 1.1741 2.1774 -3.5901 16 6 1.5673 3.6568 -3.6270 17 6 1.1969 4.3087 -2.2918 18 1 0.1178 4.2562 -2.1476 19 7 1.6231 5.7145 -2.2976 20 6 0.7114 6.5399 -3.1116 21 6 0.8069 7.6190 -2.0238 22 6 1.1157 6.4254 -1.1092 23 6 1.9013 3.5659 -1.1543 24 1 -0.3633 0.4497 -0.9240 25 1 -0.3634 -1.0251 0.0726 26 1 -0.3633 0.5754 0.8515 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.3930 0.4264 1.7177 30 1 2.9586 1.5713 -2.5461 31 1 1.5901 0.4461 -2.3772 32 1 0.0946 2.0907 -3.4665 33 1 1.4739 1.6978 -4.5218 34 1 1.0337 4.1555 -4.4362 35 1 2.6415 3.7443 -3.7895 36 1 1.1389 6.8465 -4.0661 37 1 -0.2865 6.1132 -3.2133 38 1 -0.1378 8.1165 -1.8046 39 1 1.6390 8.3117 -2.1500 40 1 0.2259 5.9681 -0.6767 41 1 1.8859 6.6350 -0.3669 42 1 1.6284 4.0186 -0.2011 43 1 2.9807 3.6312 -1.2916 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702299975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:54 Heat of formation + Delta-G solvation = 30.775045 kcal Electronic energy + Delta-G solvation = -20172.072096 eV Core-core repulsion = 17445.792298 eV Total energy + Delta-G solvation = -2726.279798 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.17107 -38.02028 -34.90190 -31.98017 -30.94806 -30.45804 -26.57774 -26.29435 -25.60502 -23.85060 -22.46151 -21.83549 -19.83845 -19.55792 -18.96385 -16.80887 -15.88102 -15.61104 -15.11715 -14.43772 -14.16471 -13.87105 -13.72103 -13.25816 -12.79990 -12.75980 -12.59292 -12.37552 -12.00237 -11.72258 -11.46403 -11.07888 -10.93635 -10.82292 -10.77789 -10.63370 -10.55630 -10.35514 -10.11399 -10.08460 -9.84378 -9.77185 -9.44012 -8.69178 -8.43869 -8.30570 -7.21780 -6.32234 -4.01670 3.42970 3.47364 3.62413 4.08238 4.50850 4.53491 4.90509 4.93950 5.06691 5.29311 5.30562 5.39324 5.46338 5.55245 5.58462 5.73800 5.77881 5.85830 5.90988 5.96950 6.09124 6.15748 6.20696 6.24613 6.26426 6.33192 6.36648 6.42900 6.53461 6.57885 6.68848 6.79897 6.91111 7.11032 7.19455 7.27849 7.41279 7.49959 7.93060 8.07032 8.42033 8.61918 8.90352 9.67599 11.04221 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.007867 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.994862 B = 3558.154175 C = 4649.473568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.114 4.114 3 C 0.206 3.794 4 H -0.012 1.012 5 C -0.578 4.578 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 1.066 2.934 10 H -0.290 1.290 11 H -0.285 1.285 12 H -0.288 1.288 13 N -0.522 5.522 14 C 0.048 3.952 15 C -0.112 4.112 16 C -0.105 4.105 17 C 0.053 3.947 18 H 0.052 0.948 19 N -0.470 5.470 20 C -0.001 4.001 21 C -0.148 4.148 22 C 0.001 3.999 23 C 0.079 3.921 24 H 0.045 0.955 25 H 0.019 0.981 26 H 0.062 0.938 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.270 0.730 30 H 0.019 0.981 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.024 7.656 -10.521 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.152 4.152 3 C 0.100 3.900 4 H 0.005 0.995 5 C -0.617 4.617 6 H 0.073 0.927 7 C -0.184 4.184 8 N -0.550 5.550 9 Si 0.895 3.105 10 H -0.217 1.217 11 H -0.211 1.211 12 H -0.214 1.214 13 N -0.247 5.247 14 C -0.080 4.080 15 C -0.151 4.151 16 C -0.143 4.143 17 C -0.056 4.056 18 H 0.070 0.930 19 N -0.193 5.193 20 C -0.130 4.130 21 C -0.186 4.186 22 C -0.128 4.128 23 C -0.050 4.050 24 H 0.064 0.936 25 H 0.038 0.962 26 H 0.081 0.919 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.676 7.503 -8.967 12.592 hybrid contribution -0.046 -0.130 -1.593 1.599 sum -4.723 7.373 -10.560 13.717 Atomic orbital electron populations 1.21436 0.96310 0.97932 1.02073 1.21631 0.96402 0.98258 0.98952 1.19346 0.91783 0.90624 0.88253 0.99473 1.21807 1.30286 1.18485 0.91096 0.92689 1.25688 0.94751 0.96147 1.01787 1.70768 1.23650 1.28417 1.32122 0.83584 0.75579 0.75898 0.75435 1.21656 1.21059 1.21409 1.61877 1.60083 1.01105 1.01674 1.22110 0.96405 0.98778 0.90715 1.21550 1.01048 0.94923 0.97547 1.21495 1.01309 0.95449 0.96038 1.22307 0.98171 0.88690 0.96453 0.93001 1.68922 1.42819 1.01904 1.05624 1.23712 0.96324 0.94650 0.98306 1.23116 1.02014 0.96499 0.96984 1.23699 1.00054 0.94017 0.95071 1.21792 0.96216 0.89428 0.97547 0.93569 0.96213 0.91918 0.95930 0.91769 0.91886 0.96327 0.90947 0.91630 0.92275 0.92892 0.91908 0.90327 0.91673 0.91042 0.89254 0.91058 0.89755 0.89557 0.95856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.52 37.16 0.35 -2.22 16 2 C -0.11 -2.65 4.90 -26.73 -0.13 -2.78 16 3 C 0.21 5.11 1.39 -68.87 -0.10 5.02 16 4 H -0.01 -0.34 7.53 -51.93 -0.39 -0.73 16 5 C -0.58 -15.58 6.47 -34.44 -0.22 -15.80 16 6 H 0.05 1.51 6.71 -52.49 -0.35 1.15 16 7 C 0.02 0.57 5.19 -17.82 -0.09 0.48 16 8 N -0.91 -26.98 13.03 55.43 0.72 -26.26 16 9 Si 1.07 24.99 29.91 -169.99 -5.08 19.90 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.52 -11.12 3.70 -228.08 -0.84 -11.97 16 14 C 0.05 0.89 5.15 -3.83 -0.02 0.88 16 15 C -0.11 -1.70 6.09 -26.65 -0.16 -1.87 16 16 C -0.10 -1.58 5.38 -26.60 -0.14 -1.72 16 17 C 0.05 0.88 1.70 -67.63 -0.11 0.76 16 18 H 0.05 0.90 7.56 -51.93 -0.39 0.50 16 19 N -0.47 -7.11 6.13 -236.51 -1.45 -8.56 16 20 C 0.00 -0.01 7.14 -7.54 -0.05 -0.06 16 21 C -0.15 -1.63 8.47 -26.20 -0.22 -1.85 16 22 C 0.00 0.01 6.73 -7.54 -0.05 -0.04 16 23 C 0.08 1.61 4.52 -3.83 -0.02 1.59 16 24 H 0.05 0.94 7.62 -51.93 -0.40 0.54 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 1.46 7.18 -51.93 -0.37 1.09 16 27 H 0.02 0.48 6.43 -51.93 -0.33 0.14 16 28 H 0.06 1.64 6.31 -51.93 -0.33 1.32 16 29 H 0.27 7.99 5.99 -40.82 -0.24 7.74 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 1.33 6.04 -51.93 -0.31 1.02 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.71 7.81 -51.93 -0.41 0.30 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.76 7.67 -51.93 -0.40 0.36 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.03 7.80 -51.93 -0.41 0.63 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.09 1.94 5.54 -51.93 -0.29 1.65 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 318.35 15.07 4.80 4.80 Total: -1.00 -28.59 318.35 -10.48 -39.06 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.64 Total: 0.64 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -0.97 Total: -17.62 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -1.57 Total: -46.79 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.59 -10.48 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702299975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.838 kcal (2) G-P(sol) polarization free energy of solvation -28.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds