Wall clock time and date at job start Mon Mar 30 2020 04:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47393 * 2 1 4 4 H 1.08994 * 109.46964 * 183.02208 * 3 2 1 5 5 C 1.50699 * 109.47030 * 63.01789 * 3 2 1 6 6 H 1.08000 * 120.00374 * 245.12166 * 5 3 2 7 7 C 1.37884 * 119.99529 * 65.12624 * 5 3 2 8 8 N 1.31507 * 120.00419 * 8.54321 * 7 5 3 9 9 Si 1.86801 * 119.99743 * 188.54579 * 7 5 3 10 10 H 1.48500 * 109.47183 * 270.00007 * 9 7 5 11 11 H 1.48497 * 109.47064 * 149.99867 * 9 7 5 12 12 H 1.48499 * 109.47020 * 29.99900 * 9 7 5 13 13 N 1.46897 * 109.46864 * 303.02184 * 3 2 1 14 14 C 1.46852 * 111.00040 * 301.10999 * 13 3 2 15 15 C 1.53037 * 109.52235 * 174.16024 * 14 13 3 16 16 C 1.53120 * 109.27805 * 59.18142 * 15 14 13 17 17 C 1.53127 * 109.16077 * 302.34318 * 16 15 14 18 18 H 1.09000 * 109.53238 * 297.69371 * 17 16 15 19 19 N 1.46895 * 109.50114 * 177.59511 * 17 16 15 20 20 C 1.47479 * 111.00043 * 75.98985 * 19 17 16 21 21 C 1.53519 * 87.93249 * 138.69791 * 20 19 17 22 22 C 1.47486 * 110.99653 * 171.95883 * 19 17 16 23 23 C 1.46850 * 111.00082 * 176.89922 * 13 3 2 24 24 H 1.08997 * 109.47074 * 64.05008 * 1 2 3 25 25 H 1.09000 * 109.47541 * 184.04888 * 1 2 3 26 26 H 1.09001 * 109.47055 * 304.05113 * 1 2 3 27 27 H 1.09002 * 109.47272 * 239.99684 * 2 1 3 28 28 H 1.09000 * 109.46977 * 120.00014 * 2 1 3 29 29 H 0.97006 * 119.99697 * 357.51591 * 8 7 5 30 30 H 1.09000 * 109.46171 * 294.17857 * 14 13 3 31 31 H 1.08998 * 109.46036 * 54.14840 * 14 13 3 32 32 H 1.09000 * 109.50426 * 299.23900 * 15 14 13 33 33 H 1.08996 * 109.50297 * 179.11941 * 15 14 13 34 34 H 1.09000 * 109.52729 * 182.44209 * 16 15 14 35 35 H 1.09002 * 109.52628 * 62.24796 * 16 15 14 36 36 H 1.08997 * 113.47424 * 253.46258 * 20 19 17 37 37 H 1.09002 * 113.47672 * 23.93890 * 20 19 17 38 38 H 1.08996 * 114.17026 * 220.32925 * 21 20 19 39 39 H 1.09002 * 114.34204 * 87.63488 * 21 20 19 40 40 H 1.08995 * 113.47788 * 336.06504 * 22 19 17 41 41 H 1.09003 * 113.47332 * 106.52937 * 22 19 17 42 42 H 1.08999 * 109.45981 * 305.85750 * 23 13 3 43 43 H 1.09000 * 109.45944 * 65.82916 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1286 1.4429 -0.0542 5 6 1.5997 2.1310 1.2662 6 1 0.9088 2.9597 1.2181 7 6 2.0791 1.7029 2.4861 8 7 3.0435 0.8103 2.5372 9 14 1.3584 2.3907 4.0662 10 1 2.1186 3.6002 4.4717 11 1 1.4485 1.3670 5.1381 12 1 -0.0650 2.7518 3.8450 13 7 1.4917 2.1557 -1.1613 14 6 1.8792 1.4964 -2.4149 15 6 1.1741 2.1774 -3.5901 16 6 1.5673 3.6568 -3.6270 17 6 1.1969 4.3087 -2.2918 18 1 0.1178 4.2562 -2.1476 19 7 1.6231 5.7145 -2.2976 20 6 0.7114 6.5399 -3.1116 21 6 0.8069 7.6190 -2.0238 22 6 1.1157 6.4254 -1.1092 23 6 1.9013 3.5659 -1.1543 24 1 -0.3633 0.4497 -0.9240 25 1 -0.3634 -1.0251 0.0726 26 1 -0.3633 0.5754 0.8515 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.3930 0.4264 1.7177 30 1 2.9586 1.5713 -2.5461 31 1 1.5901 0.4461 -2.3772 32 1 0.0946 2.0907 -3.4665 33 1 1.4739 1.6978 -4.5218 34 1 1.0337 4.1555 -4.4362 35 1 2.6415 3.7443 -3.7895 36 1 1.1389 6.8465 -4.0661 37 1 -0.2865 6.1132 -3.2133 38 1 -0.1378 8.1165 -1.8046 39 1 1.6390 8.3117 -2.1500 40 1 0.2259 5.9681 -0.6767 41 1 1.8859 6.6350 -0.3669 42 1 1.6284 4.0186 -0.2011 43 1 2.9807 3.6312 -1.2916 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702299975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:53 Heat of formation + Delta-G solvation = 11.936002 kcal Electronic energy + Delta-G solvation = -20172.889018 eV Core-core repulsion = 17445.792298 eV Total energy + Delta-G solvation = -2727.096720 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38271 -39.57813 -36.62177 -33.86550 -32.49531 -32.01121 -28.11699 -27.76148 -26.91103 -25.71653 -24.06097 -23.28472 -21.32219 -20.79143 -20.55595 -18.77232 -17.39920 -16.73359 -16.59698 -15.88639 -15.83853 -15.62845 -15.22699 -14.86445 -14.45954 -14.27722 -13.95873 -13.74963 -13.37056 -13.24367 -12.98740 -12.87474 -12.68107 -12.27984 -12.16259 -12.08721 -11.97194 -11.95980 -11.74634 -11.63273 -11.58860 -11.24889 -10.96853 -10.50885 -10.39183 -9.83849 -9.05787 -8.56676 -6.26022 1.50729 1.59176 1.76500 2.55420 2.86140 3.21627 3.34532 3.57592 3.80021 3.85746 4.01397 4.07847 4.19947 4.32880 4.37644 4.42874 4.47419 4.52495 4.59108 4.63152 4.68899 4.78260 4.81103 4.87256 4.92259 4.98041 4.99738 5.01791 5.04697 5.09801 5.20197 5.27004 5.30046 5.37760 5.42568 5.51364 5.67995 5.93471 6.04623 6.14728 6.47040 6.52041 6.76510 7.51046 8.79650 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.007867 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.994862 B = 3558.154175 C = 4649.473568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.108 4.108 3 C 0.209 3.791 4 H -0.057 1.057 5 C -0.576 4.576 6 H 0.047 0.953 7 C -0.028 4.028 8 N -0.938 5.938 9 Si 1.109 2.891 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.270 1.270 13 N -0.521 5.521 14 C 0.045 3.955 15 C -0.103 4.103 16 C -0.100 4.100 17 C 0.065 3.935 18 H 0.050 0.950 19 N -0.490 5.490 20 C 0.003 3.997 21 C -0.129 4.129 22 C -0.011 4.011 23 C 0.086 3.914 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.035 0.965 29 H 0.256 0.744 30 H 0.005 0.995 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.057 0.943 43 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.964 8.751 -12.365 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.146 4.146 3 C 0.102 3.898 4 H -0.040 1.040 5 C -0.615 4.615 6 H 0.065 0.935 7 C -0.226 4.226 8 N -0.576 5.576 9 Si 0.932 3.068 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.195 1.195 13 N -0.245 5.245 14 C -0.083 4.083 15 C -0.141 4.141 16 C -0.138 4.138 17 C -0.044 4.044 18 H 0.068 0.932 19 N -0.213 5.213 20 C -0.126 4.126 21 C -0.166 4.166 22 C -0.140 4.140 23 C -0.042 4.042 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.023 0.977 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges -6.626 8.613 -10.844 15.352 hybrid contribution 0.611 -0.451 -1.061 1.305 sum -6.016 8.161 -11.905 15.637 Atomic orbital electron populations 1.21310 0.94385 0.99266 1.01589 1.21506 0.97921 0.96771 0.98433 1.19199 0.89225 0.92111 0.89297 1.03981 1.22004 1.29322 1.17952 0.92197 0.93487 1.27009 0.94469 0.95937 1.05207 1.70884 1.25286 1.30076 1.31368 0.83037 0.75997 0.75664 0.72136 1.20507 1.20982 1.19487 1.61892 1.59361 1.01409 1.01873 1.22252 0.96175 0.99255 0.90651 1.21529 1.00891 0.94763 0.96943 1.21477 1.01072 0.95492 0.95725 1.22129 0.97160 0.89565 0.95565 0.93241 1.68942 1.44223 1.01174 1.06977 1.23792 0.96089 0.93890 0.98789 1.23069 1.03367 0.95477 0.94719 1.23758 0.99220 0.95877 0.95139 1.21690 0.94910 0.89425 0.98214 0.92320 0.93667 0.94255 0.94056 0.94642 0.93331 0.97685 0.90643 0.90958 0.89207 0.89931 0.92895 0.88778 0.90811 0.88838 0.88432 0.91928 0.91318 0.92436 0.98711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.53 9.52 71.98 0.68 -3.85 16 2 C -0.11 -5.09 4.90 30.59 0.15 -4.94 16 3 C 0.21 10.78 1.39 44.17 0.06 10.84 16 4 H -0.06 -3.39 7.53 -2.39 -0.02 -3.41 16 5 C -0.58 -32.15 6.47 25.60 0.17 -31.99 16 6 H 0.05 2.66 6.71 -2.91 -0.02 2.64 16 7 C -0.03 -1.60 5.19 84.66 0.44 -1.16 16 8 N -0.94 -57.56 13.03 21.45 0.28 -57.28 16 9 Si 1.11 50.96 29.91 68.60 2.05 53.02 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 N -0.52 -22.54 3.70 -875.52 -3.24 -25.78 16 14 C 0.04 1.62 5.15 86.32 0.44 2.07 16 15 C -0.10 -2.84 6.09 30.65 0.19 -2.65 16 16 C -0.10 -2.76 5.38 30.68 0.17 -2.59 16 17 C 0.07 2.10 1.70 44.97 0.08 2.18 16 18 H 0.05 1.63 7.56 -2.39 -0.02 1.62 16 19 N -0.49 -14.29 6.13 -902.19 -5.53 -19.82 16 20 C 0.00 0.06 7.14 83.58 0.60 0.66 16 21 C -0.13 -2.49 8.47 30.94 0.26 -2.23 16 22 C -0.01 -0.30 6.73 83.57 0.56 0.27 16 23 C 0.09 3.65 4.52 86.32 0.39 4.04 16 24 H 0.06 2.28 7.62 -2.39 -0.02 2.27 16 25 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.04 1.81 7.18 -2.39 -0.02 1.79 16 27 H 0.04 1.76 6.43 -2.39 -0.02 1.75 16 28 H 0.03 1.87 6.31 -2.39 -0.02 1.85 16 29 H 0.26 16.03 5.99 -92.70 -0.56 15.48 16 30 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.08 2.68 6.04 -2.39 -0.01 2.66 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.08 1.85 7.81 -2.39 -0.02 1.84 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 1.45 7.67 -2.39 -0.02 1.44 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.06 1.81 7.80 -2.39 -0.02 1.79 16 41 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.06 2.72 5.54 -2.39 -0.01 2.70 16 43 H -0.01 -0.25 8.14 -2.39 -0.02 -0.27 16 Total: -1.00 -64.53 318.35 -1.09 -65.62 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 1.17 Total: 13.60 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 4.19 Total: -29.36 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -8.49 Total: -102.88 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.05 Total: 53.02 kcal Total: -64.53 -1.09 -65.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702299975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.559 kcal (2) G-P(sol) polarization free energy of solvation -64.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds