Wall clock time and date at job start Mon Mar 30 2020 03:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46867 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46982 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47178 * 179.97438 * 12 11 10 14 14 C 1.47843 * 111.00089 * 290.84666 * 13 12 11 15 15 C 1.54902 * 104.79787 * 213.63347 * 14 13 12 16 16 C 1.55141 * 101.65257 * 37.06978 * 15 14 13 17 17 H 1.09004 * 110.70542 * 82.72844 * 16 15 14 18 18 N 1.46897 * 110.85666 * 205.89315 * 16 15 14 19 19 C 1.47487 * 110.99842 * 192.71113 * 18 16 15 20 20 C 1.53517 * 87.92782 * 138.70538 * 19 18 16 21 21 C 1.47477 * 111.00172 * 288.68297 * 18 16 15 22 22 C 1.47434 * 111.00127 * 170.00179 * 13 12 11 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 25 25 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 26 26 H 1.08996 * 109.46893 * 300.00088 * 10 9 7 27 27 H 1.08996 * 109.47396 * 60.00103 * 10 9 7 28 28 H 1.08996 * 109.47435 * 299.99755 * 11 10 9 29 29 H 1.09004 * 109.47044 * 60.00137 * 11 10 9 30 30 H 1.08996 * 109.47142 * 300.00311 * 12 11 10 31 31 H 1.09004 * 109.46812 * 60.00370 * 12 11 10 32 32 H 1.09001 * 110.37815 * 332.46504 * 14 13 12 33 33 H 1.09006 * 110.37529 * 94.80433 * 14 13 12 34 34 H 1.09001 * 110.99657 * 278.97811 * 15 14 13 35 35 H 1.09002 * 111.02537 * 155.17145 * 15 14 13 36 36 H 1.08996 * 113.47574 * 253.47047 * 19 18 16 37 37 H 1.08999 * 113.47753 * 23.94028 * 19 18 16 38 38 H 1.09000 * 114.16971 * 220.32737 * 20 19 18 39 39 H 1.08997 * 114.16953 * 87.62387 * 20 19 18 40 40 H 1.09000 * 113.47864 * 336.06765 * 21 18 16 41 41 H 1.08999 * 113.47005 * 106.53171 * 21 18 16 42 42 H 1.08998 * 109.89083 * 242.66330 * 22 13 12 43 43 H 1.09005 * 109.88938 * 3.85454 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0018 13 7 1.7403 -7.4222 -0.0018 14 6 1.0505 -7.6358 1.2883 15 6 1.0929 -9.1682 1.5107 16 6 2.4935 -9.5277 0.9484 17 1 3.2664 -9.3488 1.6959 18 7 2.5304 -10.9227 0.4895 19 6 3.9165 -11.3602 0.2393 20 6 3.5538 -12.6987 0.8978 21 6 2.5012 -11.8557 1.6312 22 6 2.6499 -8.5575 -0.2414 23 1 -0.4849 -0.8401 0.0004 24 1 0.6248 -2.5571 0.8897 25 1 0.6241 -2.5567 -0.8903 26 1 2.8720 -3.6043 -0.8905 27 1 2.8720 -3.6044 0.8894 28 1 0.8535 -5.0452 0.8885 29 1 0.8541 -5.0446 -0.8914 30 1 3.1014 -6.0918 -0.8917 31 1 3.1014 -6.0927 0.8882 32 1 1.5787 -7.1211 2.0909 33 1 0.0187 -7.2894 1.2288 34 1 0.3055 -9.6668 0.9454 35 1 1.0237 -9.4116 2.5709 36 1 4.1595 -11.4489 -0.8195 37 1 4.6593 -10.7894 0.7966 38 1 4.3319 -13.1030 1.5451 39 1 3.1364 -13.4352 0.2112 40 1 2.8662 -11.4171 2.5599 41 1 1.5447 -12.3643 1.7518 42 1 2.3780 -9.0613 -1.1689 43 1 3.6791 -8.2026 -0.2976 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702302041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:58 Heat of formation + Delta-G solvation = 19.457702 kcal Electronic energy + Delta-G solvation = -18387.049503 eV Core-core repulsion = 15660.278948 eV Total energy + Delta-G solvation = -2726.770555 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.65236 -38.45088 -35.05684 -33.07145 -31.29581 -29.67751 -28.17224 -26.25225 -26.07157 -24.06940 -22.13931 -21.08521 -20.58595 -20.18830 -20.10989 -16.83797 -16.65494 -16.33787 -15.60931 -15.06242 -14.70141 -14.22427 -13.74116 -13.67262 -13.46943 -13.07972 -12.90066 -12.78156 -12.47370 -11.96725 -11.89531 -11.61002 -11.36960 -11.12010 -10.98119 -10.94534 -10.88839 -10.73378 -10.53423 -10.46326 -10.09155 -9.71928 -9.57911 -9.27008 -8.45827 -8.28544 -8.26452 -6.30776 -3.99046 3.45728 3.49945 3.56517 3.65713 3.98675 4.01447 4.32535 4.42774 4.58843 4.66339 4.75628 4.93028 4.98064 5.15735 5.21752 5.25922 5.34819 5.36130 5.40268 5.44654 5.46628 5.52608 5.59416 5.72404 5.77402 5.85692 5.91999 5.96880 5.99550 6.09677 6.18818 6.44827 6.72808 6.76102 6.87784 6.98104 7.02015 7.19265 7.49769 7.63356 8.29518 8.53039 8.95120 9.73465 11.10089 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.065100 B = 0.002903 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.004081 B = 9642.837677 C = 9864.721091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 1.071 2.929 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.601 4.601 8 H 0.047 0.953 9 C 0.008 3.992 10 C -0.102 4.102 11 C -0.113 4.113 12 C 0.052 3.948 13 N -0.527 5.527 14 C 0.044 3.956 15 C -0.118 4.118 16 C 0.026 3.974 17 H 0.053 0.947 18 N -0.460 5.460 19 C -0.004 4.004 20 C -0.147 4.147 21 C -0.002 4.002 22 C 0.054 3.946 23 H 0.269 0.731 24 H 0.005 0.995 25 H 0.007 0.993 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.721 -25.087 3.464 26.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.191 4.191 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.639 4.639 8 H 0.066 0.934 9 C -0.029 4.029 10 C -0.140 4.140 11 C -0.151 4.151 12 C -0.076 4.076 13 N -0.251 5.251 14 C -0.084 4.084 15 C -0.157 4.157 16 C -0.084 4.084 17 H 0.071 0.929 18 N -0.182 5.182 19 C -0.133 4.133 20 C -0.185 4.185 21 C -0.131 4.131 22 C -0.074 4.074 23 H 0.079 0.921 24 H 0.023 0.977 25 H 0.025 0.975 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.654 -23.391 2.522 24.196 hybrid contribution 1.471 -1.456 1.382 2.488 sum 7.125 -24.847 3.904 26.141 Atomic orbital electron populations 1.70743 1.06883 1.30628 1.46966 1.25862 0.96606 1.02740 0.93923 0.83517 0.74664 0.75153 0.76681 1.21518 1.20983 1.21533 1.22123 0.94261 0.92204 1.55357 0.93432 1.19218 0.94669 0.93150 0.95860 1.21467 0.98811 0.93547 1.00209 1.21637 0.97887 0.93547 1.02000 1.22444 0.95836 0.88986 1.00291 1.63616 1.27888 1.01820 1.31754 1.23037 1.00414 0.94742 0.90246 1.22714 0.96460 0.96003 1.00494 1.23521 0.97848 0.90324 0.96724 0.92936 1.69029 1.20609 1.02379 1.26222 1.23781 0.91501 0.95720 1.02336 1.23120 0.98830 0.96683 0.99853 1.23727 1.00476 0.94868 0.94036 1.22759 0.95334 0.90886 0.98403 0.92063 0.97676 0.97478 0.93318 0.93616 0.92735 0.91696 0.91050 0.95137 0.93492 0.89794 0.89678 0.91261 0.89586 0.91481 0.90727 0.88845 0.91518 0.89682 0.89598 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.98 13.65 55.43 0.76 -28.22 16 2 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 3 Si 1.07 26.05 29.90 -169.99 -5.08 20.97 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.60 -17.82 9.11 -34.44 -0.31 -18.14 16 8 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 9 C 0.01 0.22 4.28 -27.88 -0.12 0.10 16 10 C -0.10 -2.20 5.15 -26.73 -0.14 -2.34 16 11 C -0.11 -2.03 5.26 -26.73 -0.14 -2.17 16 12 C 0.05 0.79 4.57 -3.82 -0.02 0.77 16 13 N -0.53 -7.33 5.16 -231.25 -1.19 -8.52 16 14 C 0.04 0.54 5.78 -2.30 -0.01 0.53 16 15 C -0.12 -1.23 6.33 -24.59 -0.16 -1.39 16 16 C 0.03 0.27 2.18 -65.89 -0.14 0.12 16 17 H 0.05 0.53 7.67 -51.93 -0.40 0.14 16 18 N -0.46 -4.34 6.12 -234.41 -1.44 -5.78 16 19 C 0.00 -0.03 7.51 -7.53 -0.06 -0.09 16 20 C -0.15 -0.92 8.47 -26.20 -0.22 -1.14 16 21 C 0.00 -0.02 7.31 -7.54 -0.06 -0.07 16 22 C 0.05 0.65 6.40 -2.84 -0.02 0.63 16 23 H 0.27 8.49 7.22 -40.82 -0.29 8.19 16 24 H 0.00 0.14 8.01 -51.93 -0.42 -0.28 16 25 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.98 7.49 -51.93 -0.39 0.59 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.06 8.03 -51.93 -0.42 0.64 16 31 H 0.03 0.45 7.85 -51.93 -0.41 0.04 16 32 H 0.05 0.59 7.62 -51.93 -0.40 0.20 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.49 7.70 -51.93 -0.40 0.09 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.47 7.82 -51.93 -0.41 0.06 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.09 1.08 8.03 -51.93 -0.42 0.66 16 43 H 0.05 0.58 7.55 -51.93 -0.39 0.19 16 LS Contribution 336.13 15.07 5.07 5.07 Total: -1.00 -31.77 336.13 -11.56 -43.33 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -8.18 Total: -3.93 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -1.49 Total: -22.92 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: -1.87 Total: -42.52 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -5.08 Total: 20.97 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.77 -11.56 -43.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702302041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.788 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds