Wall clock time and date at job start Mon Mar 30 2020 03:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46867 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46982 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47178 * 179.97438 * 12 11 10 14 14 C 1.47843 * 111.00089 * 290.84666 * 13 12 11 15 15 C 1.54902 * 104.79787 * 213.63347 * 14 13 12 16 16 C 1.55141 * 101.65257 * 37.06978 * 15 14 13 17 17 H 1.09004 * 110.70542 * 82.72844 * 16 15 14 18 18 N 1.46897 * 110.85666 * 205.89315 * 16 15 14 19 19 C 1.47487 * 110.99842 * 192.71113 * 18 16 15 20 20 C 1.53517 * 87.92782 * 138.70538 * 19 18 16 21 21 C 1.47477 * 111.00172 * 288.68297 * 18 16 15 22 22 C 1.47434 * 111.00127 * 170.00179 * 13 12 11 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 25 25 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 26 26 H 1.08996 * 109.46893 * 300.00088 * 10 9 7 27 27 H 1.08996 * 109.47396 * 60.00103 * 10 9 7 28 28 H 1.08996 * 109.47435 * 299.99755 * 11 10 9 29 29 H 1.09004 * 109.47044 * 60.00137 * 11 10 9 30 30 H 1.08996 * 109.47142 * 300.00311 * 12 11 10 31 31 H 1.09004 * 109.46812 * 60.00370 * 12 11 10 32 32 H 1.09001 * 110.37815 * 332.46504 * 14 13 12 33 33 H 1.09006 * 110.37529 * 94.80433 * 14 13 12 34 34 H 1.09001 * 110.99657 * 278.97811 * 15 14 13 35 35 H 1.09002 * 111.02537 * 155.17145 * 15 14 13 36 36 H 1.08996 * 113.47574 * 253.47047 * 19 18 16 37 37 H 1.08999 * 113.47753 * 23.94028 * 19 18 16 38 38 H 1.09000 * 114.16971 * 220.32737 * 20 19 18 39 39 H 1.08997 * 114.16953 * 87.62387 * 20 19 18 40 40 H 1.09000 * 113.47864 * 336.06765 * 21 18 16 41 41 H 1.08999 * 113.47005 * 106.53171 * 21 18 16 42 42 H 1.08998 * 109.89083 * 242.66330 * 22 13 12 43 43 H 1.09005 * 109.88938 * 3.85454 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0018 13 7 1.7403 -7.4222 -0.0018 14 6 1.0505 -7.6358 1.2883 15 6 1.0929 -9.1682 1.5107 16 6 2.4935 -9.5277 0.9484 17 1 3.2664 -9.3488 1.6959 18 7 2.5304 -10.9227 0.4895 19 6 3.9165 -11.3602 0.2393 20 6 3.5538 -12.6987 0.8978 21 6 2.5012 -11.8557 1.6312 22 6 2.6499 -8.5575 -0.2414 23 1 -0.4849 -0.8401 0.0004 24 1 0.6248 -2.5571 0.8897 25 1 0.6241 -2.5567 -0.8903 26 1 2.8720 -3.6043 -0.8905 27 1 2.8720 -3.6044 0.8894 28 1 0.8535 -5.0452 0.8885 29 1 0.8541 -5.0446 -0.8914 30 1 3.1014 -6.0918 -0.8917 31 1 3.1014 -6.0927 0.8882 32 1 1.5787 -7.1211 2.0909 33 1 0.0187 -7.2894 1.2288 34 1 0.3055 -9.6668 0.9454 35 1 1.0237 -9.4116 2.5709 36 1 4.1595 -11.4489 -0.8195 37 1 4.6593 -10.7894 0.7966 38 1 4.3319 -13.1030 1.5451 39 1 3.1364 -13.4352 0.2112 40 1 2.8662 -11.4171 2.5599 41 1 1.5447 -12.3643 1.7518 42 1 2.3780 -9.0613 -1.1689 43 1 3.6791 -8.2026 -0.2976 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702302041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:57 Heat of formation + Delta-G solvation = -1.963438 kcal Electronic energy + Delta-G solvation = -18387.978394 eV Core-core repulsion = 15660.278948 eV Total energy + Delta-G solvation = -2727.699445 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36147 -39.40206 -36.83218 -34.85930 -32.70947 -30.55390 -29.70711 -27.27856 -26.75073 -25.79956 -23.73971 -22.29597 -21.63282 -21.51172 -20.80493 -18.89016 -17.57569 -17.18294 -16.57448 -16.38122 -15.67570 -15.65881 -15.13054 -15.02395 -14.84753 -14.40844 -14.15608 -13.84628 -13.51871 -13.46196 -12.94885 -12.63930 -12.58983 -12.54063 -12.31217 -12.08622 -12.04517 -11.94327 -11.83565 -11.65407 -11.51513 -11.49025 -11.38684 -10.63790 -10.56160 -9.91805 -9.34806 -8.71355 -6.41664 1.50697 1.60760 1.78652 2.55586 2.80513 3.04804 3.13893 3.32132 3.64711 3.69451 3.91893 3.96904 3.96944 4.11025 4.26452 4.27471 4.35780 4.42951 4.44589 4.51978 4.57595 4.67090 4.72240 4.75065 4.76996 4.83787 4.87185 4.96564 4.97344 5.04750 5.06097 5.10971 5.17349 5.26836 5.29923 5.45151 5.53840 5.94954 5.99910 6.02807 6.09998 6.17212 6.55843 7.41339 8.69462 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.065100 B = 0.002903 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.004081 B = 9642.837677 C = 9864.721091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.043 4.043 3 Si 1.122 2.878 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.621 4.621 8 H 0.051 0.949 9 C 0.007 3.993 10 C -0.090 4.090 11 C -0.101 4.101 12 C 0.063 3.937 13 N -0.542 5.542 14 C 0.040 3.960 15 C -0.110 4.110 16 C 0.034 3.966 17 H 0.058 0.942 18 N -0.480 5.480 19 C -0.008 4.008 20 C -0.136 4.136 21 C -0.003 4.003 22 C 0.056 3.944 23 H 0.255 0.745 24 H -0.014 1.014 25 H -0.014 1.014 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.408 -26.026 4.082 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.240 4.240 3 Si 0.943 3.057 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.659 4.659 8 H 0.069 0.931 9 C -0.030 4.030 10 C -0.128 4.128 11 C -0.139 4.139 12 C -0.065 4.065 13 N -0.266 5.266 14 C -0.088 4.088 15 C -0.148 4.148 16 C -0.076 4.076 17 H 0.076 0.924 18 N -0.202 5.202 19 C -0.137 4.137 20 C -0.174 4.174 21 C -0.132 4.132 22 C -0.072 4.072 23 H 0.064 0.936 24 H 0.004 0.996 25 H 0.004 0.996 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.344 -24.373 3.144 25.649 hybrid contribution 0.905 -1.215 1.170 1.914 sum 8.249 -25.588 4.314 27.229 Atomic orbital electron populations 1.70887 1.08000 1.29827 1.48943 1.27560 0.96656 1.07121 0.92673 0.82882 0.74155 0.70759 0.77910 1.19594 1.20691 1.19278 1.22570 0.94740 0.93562 1.54988 0.93062 1.19192 0.95189 0.94746 0.93865 1.21290 0.97737 0.93290 1.00497 1.21449 0.98016 0.93103 1.01350 1.22228 0.94888 0.88510 1.00834 1.63525 1.28475 1.01880 1.32761 1.23066 0.99728 0.96371 0.89620 1.22642 0.96463 0.94181 1.01490 1.23410 0.97653 0.90715 0.95859 0.92446 1.69037 1.21920 1.01931 1.27357 1.23849 0.90729 0.96563 1.02528 1.23088 0.98685 0.95988 0.99622 1.23794 1.01059 0.94561 0.93802 1.22723 0.95076 0.90517 0.98869 0.93611 0.99555 0.99599 0.93051 0.93125 0.92994 0.92790 0.90638 0.94440 0.93499 0.90658 0.90430 0.89521 0.89766 0.91037 0.89104 0.88675 0.90876 0.89553 0.90448 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.41 13.65 21.45 0.29 -60.12 16 2 C -0.04 -2.60 5.46 84.65 0.46 -2.14 16 3 Si 1.12 51.58 29.90 68.60 2.05 53.63 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.62 -37.01 9.11 25.60 0.23 -36.78 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.01 0.39 4.28 29.85 0.13 0.52 16 10 C -0.09 -3.87 5.15 30.59 0.16 -3.71 16 11 C -0.10 -3.63 5.26 30.59 0.16 -3.47 16 12 C 0.06 1.85 4.57 86.31 0.39 2.24 16 13 N -0.54 -14.62 5.16 -885.55 -4.57 -19.20 16 14 C 0.04 0.96 5.78 86.77 0.50 1.47 16 15 C -0.11 -2.12 6.33 31.98 0.20 -1.92 16 16 C 0.03 0.64 2.18 46.10 0.10 0.74 16 17 H 0.06 1.04 7.67 -2.39 -0.02 1.02 16 18 N -0.48 -8.25 6.12 -895.55 -5.48 -13.73 16 19 C -0.01 -0.11 7.51 83.58 0.63 0.52 16 20 C -0.14 -1.39 8.47 30.94 0.26 -1.13 16 21 C 0.00 -0.04 7.31 83.58 0.61 0.57 16 22 C 0.06 1.27 6.40 86.65 0.55 1.83 16 23 H 0.25 16.63 7.22 -92.71 -0.67 15.96 16 24 H -0.01 -0.80 8.01 -2.39 -0.02 -0.82 16 25 H -0.01 -0.84 8.01 -2.39 -0.02 -0.86 16 26 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.05 1.87 7.49 -2.39 -0.02 1.86 16 29 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.08 2.14 8.03 -2.39 -0.02 2.12 16 31 H 0.04 1.05 7.85 -2.38 -0.02 1.03 16 32 H 0.05 1.13 7.62 -2.39 -0.02 1.11 16 33 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 0.90 7.70 -2.39 -0.02 0.88 16 38 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 0.84 7.82 -2.39 -0.02 0.83 16 41 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.89 8.03 -2.39 -0.02 1.87 16 43 H 0.06 1.20 7.55 -2.38 -0.02 1.18 16 Total: -1.00 -67.98 336.13 -2.28 -70.26 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.03 Total: 10.42 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 4.40 Total: -41.27 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -9.76 Total: -93.05 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.05 Total: 53.63 kcal Total: -67.98 -2.28 -70.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702302041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.300 kcal (2) G-P(sol) polarization free energy of solvation -67.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds