Wall clock time and date at job start Mon Mar 30 2020 03:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48521 * 110.99472 * 2 1 4 4 C 1.54288 * 104.71479 * 200.72337 * 3 2 1 5 5 H 1.08997 * 112.83938 * 261.18339 * 4 3 2 6 6 C 1.54284 * 108.82095 * 135.72469 * 4 3 2 7 7 N 1.48619 * 104.79259 * 224.35021 * 6 4 3 8 8 C 1.46901 * 111.10439 * 159.14887 * 7 6 4 9 9 C 1.52998 * 109.47618 * 54.59931 * 8 7 6 10 10 C 1.52996 * 109.47621 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47432 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99972 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00089 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99889 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00119 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46987 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47142 * 120.00401 * 15 13 11 18 18 H 1.48499 * 109.47096 * 240.00653 * 15 13 11 19 19 C 1.48514 * 104.15311 * 39.57590 * 7 6 4 20 20 C 1.54289 * 104.81552 * 320.42036 * 19 7 6 21 21 C 1.52999 * 112.37919 * 261.38595 * 20 19 7 22 22 C 1.48514 * 110.99916 * 244.60611 * 2 1 3 23 23 H 1.09006 * 109.47511 * 60.12619 * 1 2 3 24 24 H 1.09003 * 109.47180 * 180.12386 * 1 2 3 25 25 H 1.08994 * 109.47427 * 300.12238 * 1 2 3 26 26 H 1.09001 * 110.38934 * 81.92053 * 3 2 1 27 27 H 1.08994 * 110.48832 * 319.58020 * 3 2 1 28 28 H 1.08998 * 110.38606 * 343.08747 * 6 4 3 29 29 H 1.09007 * 110.38581 * 105.34934 * 6 4 3 30 30 H 1.08996 * 109.47632 * 174.60578 * 8 7 6 31 31 H 1.09008 * 109.46867 * 294.60143 * 8 7 6 32 32 H 1.09004 * 109.47022 * 300.00291 * 9 8 7 33 33 H 1.09003 * 109.47185 * 59.99869 * 9 8 7 34 34 H 1.09004 * 109.46857 * 300.00021 * 10 9 8 35 35 H 1.09003 * 109.47252 * 59.99537 * 10 9 8 36 36 H 0.97007 * 119.99825 * 179.97438 * 14 13 11 37 37 H 1.09002 * 110.38930 * 201.55451 * 19 7 6 38 38 H 1.09000 * 110.38839 * 79.28567 * 19 7 6 39 39 H 1.09001 * 109.47039 * 58.99079 * 21 20 19 40 40 H 1.08998 * 109.46696 * 178.98257 * 21 20 19 41 41 H 1.08995 * 109.47282 * 298.98531 * 21 20 19 42 42 H 1.08996 * 110.39254 * 40.46518 * 22 2 1 43 43 H 1.09000 * 110.39029 * 278.07937 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0011 1.3866 0.0000 4 6 3.4446 1.2524 -0.5281 5 1 4.1876 1.2419 0.2694 6 6 3.7039 2.3716 -1.5579 7 7 4.3994 1.6966 -2.6847 8 6 4.2808 2.4776 -3.9233 9 6 4.7850 3.9013 -3.6789 10 6 4.6610 4.7147 -4.9688 11 6 5.1570 6.1172 -4.7279 12 1 5.5244 6.4000 -3.7524 13 6 5.1427 7.0391 -5.7530 14 7 4.6958 6.6946 -6.9409 15 14 5.7582 8.7773 -5.4546 16 1 6.2050 8.9090 -4.0444 17 1 6.8980 9.0617 -6.3631 18 1 4.6615 9.7430 -5.7190 19 6 3.7040 0.3904 -2.8104 20 6 3.4447 -0.0599 -1.3577 21 6 4.4876 -1.0648 -0.8643 22 6 2.0012 -0.5946 -1.2525 23 1 -0.3634 0.5119 -0.8911 24 1 -0.3634 -1.0277 0.0022 25 1 -0.3634 0.5157 0.8888 26 1 2.0031 1.7926 1.0116 27 1 1.4121 2.0213 -0.6620 28 1 2.7613 2.8004 -1.8980 29 1 4.3384 3.1455 -1.1260 30 1 4.8779 2.0100 -4.7062 31 1 3.2364 2.5103 -4.2336 32 1 4.1878 4.3688 -2.8961 33 1 5.8294 3.8686 -3.3686 34 1 5.2579 4.2473 -5.7519 35 1 3.6165 4.7474 -5.2788 36 1 4.6854 7.3434 -7.6621 37 1 4.3403 -0.3307 -3.3236 38 1 2.7616 0.5117 -3.3444 39 1 5.4795 -0.6165 -0.9213 40 1 4.2704 -1.3361 0.1688 41 1 4.4559 -1.9576 -1.4888 42 1 1.4117 -0.2671 -2.1088 43 1 2.0032 -1.6825 -1.1855 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702478303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:38 Heat of formation + Delta-G solvation = -2.102907 kcal Electronic energy + Delta-G solvation = -19171.266082 eV Core-core repulsion = 16443.560589 eV Total energy + Delta-G solvation = -2727.705493 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.54589 -36.91097 -34.26161 -32.83005 -31.35842 -30.62260 -27.31658 -27.00305 -26.03177 -24.72821 -22.82272 -21.36176 -20.91097 -19.90132 -18.76363 -16.33889 -16.22875 -15.57057 -15.02514 -14.93827 -14.49893 -14.19266 -14.07642 -13.72669 -13.24158 -13.01004 -12.62544 -12.53188 -12.30468 -11.94113 -11.76952 -11.57305 -11.41836 -11.17839 -10.97834 -10.80709 -10.73550 -10.70711 -10.68365 -10.45040 -10.34026 -9.66694 -9.32374 -9.03194 -8.74641 -8.34040 -8.16014 -5.99047 -4.01066 3.31634 3.38980 3.43541 3.81912 4.13692 4.30865 4.46973 4.63849 4.68721 4.98205 5.03847 5.15327 5.20360 5.23655 5.30725 5.36903 5.46706 5.57782 5.60023 5.63455 5.65535 5.71853 5.76120 5.80541 5.92357 5.98732 6.01721 6.13829 6.17887 6.29744 6.31979 6.59889 6.68050 6.77510 6.79542 7.01087 7.20733 7.37794 7.69124 7.83634 8.01318 8.44727 9.06300 9.63002 11.12475 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.035593 B = 0.003947 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.481054 B = 7092.243428 C = 7328.314627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.515 5.515 3 C 0.034 3.966 4 C -0.088 4.088 5 H 0.095 0.905 6 C 0.038 3.962 7 N -0.508 5.508 8 C 0.045 3.955 9 C -0.107 4.107 10 C 0.022 3.978 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.038 3.962 20 C -0.063 4.063 21 C -0.121 4.121 22 C 0.039 3.961 23 H 0.028 0.972 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.028 0.972 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.013 0.987 36 H 0.259 0.741 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 -15.474 12.928 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.238 5.238 3 C -0.094 4.094 4 C -0.107 4.107 5 H 0.113 0.887 6 C -0.090 4.090 7 N -0.232 5.232 8 C -0.082 4.082 9 C -0.145 4.145 10 C -0.016 4.016 11 C -0.556 4.556 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.090 4.090 20 C -0.065 4.065 21 C -0.179 4.179 22 C -0.089 4.089 23 H 0.046 0.954 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.429 -15.761 13.312 21.333 hybrid contribution -1.010 1.637 -1.005 2.170 sum -6.439 -14.123 12.308 19.809 Atomic orbital electron populations 1.22508 0.88203 1.02052 1.00876 1.65372 1.07961 1.15546 1.34956 1.23298 0.94777 0.89895 1.01385 1.22728 0.96212 0.94157 0.97619 0.88692 1.23241 0.97673 0.96296 0.91771 1.65460 1.49669 1.02632 1.05391 1.22462 0.99132 0.95754 0.90867 1.21684 1.00232 0.91767 1.00830 1.19076 0.96961 0.94094 0.91477 1.21287 1.41637 0.95985 0.96684 0.92635 1.25030 0.95492 0.98819 0.95185 1.69980 1.47115 1.34762 1.01763 0.86545 0.78507 0.84712 0.78307 1.19706 1.20991 1.21060 1.23304 0.97301 0.93213 0.95181 1.21968 0.94390 0.95328 0.94777 1.21587 0.98119 0.97405 1.00755 1.23327 0.94374 1.00202 0.90968 0.95367 0.91333 0.91288 0.90060 0.93457 0.93801 0.89742 0.90940 0.95358 0.93489 0.92544 0.96552 0.96910 0.93102 0.90231 0.94123 0.91766 0.92254 0.92810 0.93665 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.53 60.06 0.57 0.68 16 2 N -0.52 -5.50 5.66 -238.43 -1.35 -6.85 16 3 C 0.03 0.38 6.03 -2.25 -0.01 0.36 16 4 C -0.09 -1.03 3.75 -88.08 -0.33 -1.36 16 5 H 0.09 1.09 7.93 -51.93 -0.41 0.68 16 6 C 0.04 0.55 4.66 -2.20 -0.01 0.53 16 7 N -0.51 -7.86 5.49 -230.08 -1.26 -9.12 16 8 C 0.05 0.82 5.06 -3.82 -0.02 0.80 16 9 C -0.11 -2.27 4.87 -26.73 -0.13 -2.40 16 10 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 11 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 12 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 15 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 19 C 0.04 0.50 5.66 -2.26 -0.01 0.49 16 20 C -0.06 -0.71 1.07 -151.96 -0.16 -0.87 16 21 C -0.12 -1.22 8.66 37.16 0.32 -0.89 16 22 C 0.04 0.41 5.68 -2.26 -0.01 0.40 16 23 H 0.03 0.26 7.97 -51.93 -0.41 -0.16 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.55 6.98 -51.93 -0.36 0.19 16 28 H 0.04 0.65 7.01 -51.93 -0.36 0.29 16 29 H 0.08 1.24 7.67 -51.92 -0.40 0.84 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.03 0.51 7.88 -51.92 -0.41 0.10 16 32 H 0.05 0.98 6.84 -51.93 -0.36 0.62 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 37 H 0.08 0.98 7.90 -51.93 -0.41 0.57 16 38 H 0.04 0.54 6.83 -51.93 -0.35 0.19 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.50 6.91 -51.93 -0.36 0.14 16 43 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16 LS Contribution 329.12 15.07 4.96 4.96 Total: -1.00 -30.25 329.12 -10.30 -40.56 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -8.02 Total: -4.31 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -0.35 Total: -15.55 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: -1.88 Total: -42.54 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.25 -10.30 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702478303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.453 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds