Wall clock time and date at job start Mon Mar 30 2020 04:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47560 * 2 1 4 4 H 1.09006 * 109.46739 * 305.00010 * 3 2 1 5 5 C 1.50701 * 109.47687 * 185.00120 * 3 2 1 6 6 H 1.07999 * 119.99966 * 240.00233 * 5 3 2 7 7 C 1.37872 * 120.00031 * 59.99514 * 5 3 2 8 8 N 1.31512 * 119.99879 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00120 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46807 * 60.00530 * 9 7 5 11 11 H 1.48499 * 109.47409 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47321 * 300.00495 * 9 7 5 13 13 N 1.46905 * 109.46944 * 64.99942 * 3 2 1 14 14 C 1.49696 * 110.99812 * 70.31852 * 13 3 2 15 15 C 1.50148 * 104.73708 * 114.21677 * 14 13 3 16 16 H 1.08997 * 110.06811 * 279.64589 * 15 14 13 17 17 C 1.50757 * 126.47457 * 143.75401 * 15 14 13 18 18 N 1.50850 * 101.83196 * 204.77740 * 17 15 14 19 19 C 1.46903 * 110.81748 * 147.19831 * 18 17 15 20 20 C 1.49706 * 107.58725 * 25.68460 * 18 17 15 21 21 C 1.50126 * 104.74171 * 7.18930 * 20 18 17 22 22 C 1.53003 * 110.05553 * 80.32717 * 21 20 18 23 23 C 1.50184 * 111.00004 * 190.00576 * 13 3 2 24 24 H 1.09001 * 109.47063 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47409 * 300.00184 * 1 2 3 26 26 H 1.09001 * 109.47102 * 60.00095 * 1 2 3 27 27 H 1.09006 * 109.47457 * 240.00124 * 2 1 3 28 28 H 1.09008 * 109.47318 * 120.00232 * 2 1 3 29 29 H 0.97003 * 120.00066 * 180.02562 * 8 7 5 30 30 H 1.08993 * 110.38480 * 355.40212 * 14 13 3 31 31 H 1.09002 * 110.38256 * 233.02667 * 14 13 3 32 32 H 1.08995 * 110.87013 * 323.30305 * 17 15 14 33 33 H 1.08996 * 110.86722 * 86.98011 * 17 15 14 34 34 H 1.08994 * 109.47087 * 300.51181 * 19 18 17 35 35 H 1.09005 * 109.47056 * 60.51211 * 19 18 17 36 36 H 1.08998 * 109.46628 * 180.51203 * 19 18 17 37 37 H 1.09006 * 110.38070 * 248.37219 * 20 18 17 38 38 H 1.08996 * 110.48017 * 126.05610 * 20 18 17 39 39 H 1.09000 * 109.46810 * 310.91143 * 22 21 20 40 40 H 1.08995 * 109.46923 * 70.90504 * 22 21 20 41 41 H 1.08993 * 109.47156 * 190.90859 * 22 21 20 42 42 H 1.08998 * 110.87170 * 94.87537 * 23 13 3 43 43 H 1.09004 * 111.04705 * 331.28042 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3373 -2.1732 9 14 6.0050 0.8800 -1.3811 10 1 6.5966 0.1451 -0.2343 11 1 6.3979 0.2166 -2.6503 12 1 6.5005 2.2799 -1.3808 13 7 1.6514 2.0992 1.2553 14 6 2.4234 1.5452 2.4119 15 6 3.2724 2.6887 2.8874 16 1 4.1544 2.7880 2.2548 17 6 3.6321 3.0040 4.3171 18 7 3.9072 4.4855 4.2473 19 6 3.5244 5.1472 5.5018 20 6 3.1306 5.0359 3.0918 21 6 2.2788 3.8915 2.6243 22 6 1.0448 3.7563 3.5188 23 6 1.9183 3.5759 1.1951 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8293 -0.0612 -2.9498 30 1 3.0513 0.7157 2.0869 31 1 1.7449 1.2222 3.2015 32 1 2.7980 2.7866 4.9843 33 1 4.5262 2.4600 4.6215 34 1 2.4622 4.9881 5.6870 35 1 4.1035 4.7285 6.3249 36 1 3.7237 6.2160 5.4242 37 1 3.8062 5.3554 2.2982 38 1 2.5049 5.8679 3.4146 39 1 1.3514 3.7667 4.5647 40 1 0.3668 4.5887 3.3306 41 1 0.5374 2.8173 3.2982 42 1 1.0242 4.1201 0.8910 43 1 2.7508 3.7964 0.5269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702478459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:11 Heat of formation + Delta-G solvation = 19.160514 kcal Electronic energy + Delta-G solvation = -20551.259231 eV Core-core repulsion = 17824.475789 eV Total energy + Delta-G solvation = -2726.783442 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.13002 -38.25864 -35.49877 -33.60537 -31.95281 -31.48225 -28.77805 -28.23500 -27.32969 -26.37587 -24.39896 -22.83011 -21.32736 -20.69137 -19.61695 -18.52067 -17.40539 -16.72505 -16.27929 -15.88740 -15.74239 -15.18212 -14.88521 -14.59853 -14.25095 -13.87875 -13.53768 -13.39968 -13.23617 -13.08996 -12.99016 -12.86162 -12.67116 -12.54719 -12.46582 -12.33993 -12.03782 -11.97491 -11.70784 -11.58141 -11.44285 -11.15476 -10.89059 -10.73470 -10.40423 -9.30886 -8.96327 -8.03001 -6.22475 1.35989 1.37363 1.43908 2.39656 2.96631 3.04476 3.16851 3.39875 3.80239 4.20491 4.27979 4.35535 4.39434 4.47352 4.55306 4.57767 4.65310 4.70236 4.76845 4.80335 4.82038 4.87862 4.94323 5.02200 5.05348 5.08688 5.15115 5.19940 5.25846 5.33554 5.38577 5.44248 5.55761 5.57260 5.69338 5.78197 5.81288 6.05776 6.14380 6.18613 6.38803 6.51647 6.97899 7.47182 8.93196 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021736 B = 0.008196 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.866022 B = 3415.667508 C = 4251.970138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.214 3.786 4 H 0.000 1.000 5 C -0.545 4.545 6 H 0.056 0.944 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.939 3.061 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.278 1.278 13 N -0.512 5.512 14 C 0.076 3.924 15 C -0.129 4.129 16 H 0.049 0.951 17 C 0.065 3.935 18 N -0.541 5.541 19 C 0.017 3.983 20 C 0.068 3.932 21 C -0.105 4.105 22 C -0.126 4.126 23 C 0.071 3.929 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.029 0.971 29 H 0.260 0.740 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.058 6.815 13.375 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.106 3.894 4 H 0.018 0.982 5 C -0.584 4.584 6 H 0.074 0.926 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.766 3.234 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.204 1.204 13 N -0.236 5.236 14 C -0.053 4.053 15 C -0.149 4.149 16 H 0.068 0.932 17 C -0.063 4.063 18 N -0.266 5.266 19 C -0.132 4.132 20 C -0.060 4.060 21 C -0.106 4.106 22 C -0.183 4.183 23 C -0.058 4.058 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.052 6.727 13.195 15.122 hybrid contribution 1.300 -0.215 -0.917 1.606 sum -1.752 6.512 12.278 14.008 Atomic orbital electron populations 1.21562 0.96337 0.99737 1.00608 1.21396 0.94461 0.98153 1.00128 1.19173 0.91871 0.91591 0.86784 0.98229 1.22099 0.93921 1.37198 1.05209 0.92555 1.25568 1.01256 0.95231 0.95746 1.69994 1.36102 1.39192 1.09820 0.85910 0.82165 0.78040 0.77313 1.19955 1.20962 1.20387 1.65480 1.52258 1.01789 1.04028 1.21783 0.94402 0.95771 0.93301 1.22537 0.97817 0.96969 0.97571 0.93238 1.22434 1.00587 0.88587 0.94659 1.65477 1.53966 1.02913 1.04210 1.22609 0.99221 0.99926 0.91397 1.21998 0.94547 0.95572 0.93834 1.21869 0.96373 0.96296 0.96103 1.21856 0.95829 1.02728 0.97906 1.22060 0.99037 0.90127 0.94534 0.93661 0.92318 0.95035 0.92123 0.95202 0.93070 0.93597 0.90706 0.91062 0.90402 0.94577 0.90659 0.90669 0.92086 0.90176 0.92140 0.92000 0.91867 0.90959 0.95436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 9.80 71.98 0.71 -4.30 16 2 C -0.10 -4.91 5.22 30.59 0.16 -4.75 16 3 C 0.21 10.59 1.66 44.17 0.07 10.67 16 4 H 0.00 -0.01 8.09 -2.38 -0.02 -0.03 16 5 C -0.55 -29.24 6.33 25.60 0.16 -29.08 16 6 H 0.06 3.02 5.06 -2.91 -0.01 3.01 16 7 C 0.02 1.19 5.29 84.65 0.45 1.64 16 8 N -0.91 -52.37 11.29 21.45 0.24 -52.13 16 9 Si 0.94 44.21 29.54 68.60 2.03 46.23 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 N -0.51 -20.97 4.14 -868.33 -3.59 -24.57 16 14 C 0.08 2.84 4.68 84.84 0.40 3.23 16 15 C -0.13 -4.37 2.51 -10.58 -0.03 -4.40 16 16 H 0.05 2.05 6.42 -2.39 -0.02 2.04 16 17 C 0.06 1.74 6.10 84.80 0.52 2.26 16 18 N -0.54 -14.12 5.58 -913.33 -5.09 -19.21 16 19 C 0.02 0.32 9.13 127.69 1.17 1.49 16 20 C 0.07 1.86 6.12 84.83 0.52 2.38 16 21 C -0.10 -3.18 1.27 -51.98 -0.07 -3.25 16 22 C -0.13 -3.22 7.85 71.98 0.57 -2.66 16 23 C 0.07 2.67 5.72 84.92 0.49 3.15 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.06 2.20 7.75 -2.39 -0.02 2.19 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 27 H 0.06 3.29 5.95 -2.38 -0.01 3.27 16 28 H 0.03 1.39 6.90 -2.38 -0.02 1.37 16 29 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.05 2.00 5.83 -2.39 -0.01 1.99 16 31 H 0.07 2.50 7.22 -2.39 -0.02 2.48 16 32 H 0.07 1.68 6.15 -2.39 -0.01 1.67 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.04 0.63 6.68 -2.39 -0.02 0.62 16 35 H 0.07 1.28 8.14 -2.38 -0.02 1.27 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.08 1.82 7.50 -2.39 -0.02 1.80 16 39 H 0.06 1.35 4.53 -2.39 -0.01 1.34 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 41 H 0.06 1.80 6.12 -2.39 -0.01 1.79 16 42 H 0.07 2.56 8.13 -2.39 -0.02 2.54 16 43 H 0.03 1.21 7.18 -2.38 -0.02 1.19 16 Total: -1.00 -58.10 308.36 -0.34 -58.44 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.97 Total: 14.83 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 5.11 Total: -23.61 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -8.44 Total: -95.90 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -58.10 -0.34 -58.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702478459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.603 kcal (2) G-P(sol) polarization free energy of solvation -58.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds