Wall clock time and date at job start Mon Mar 30 2020 04:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47164 * 2 1 4 4 H 1.08999 * 109.47191 * 180.55508 * 3 2 1 5 5 C 1.50700 * 109.46946 * 300.55318 * 3 2 1 6 6 H 1.08001 * 120.00042 * 119.99667 * 5 3 2 7 7 C 1.37882 * 120.00073 * 300.00134 * 5 3 2 8 8 N 1.31515 * 119.99428 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00025 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47604 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47200 * 119.99929 * 9 7 5 12 12 H 1.48499 * 109.47415 * 239.99833 * 9 7 5 13 13 N 1.46904 * 109.47320 * 60.54968 * 3 2 1 14 14 C 1.48520 * 110.99677 * 61.40732 * 13 3 2 15 15 C 1.54282 * 104.71458 * 159.27309 * 14 13 3 16 16 C 1.53007 * 111.92112 * 98.29245 * 15 14 13 17 17 C 1.54286 * 109.32536 * 224.05613 * 15 14 13 18 18 N 1.48515 * 104.71498 * 135.94070 * 17 15 14 19 19 C 1.50107 * 104.26395 * 320.09796 * 18 17 15 20 20 C 1.54278 * 103.94985 * 39.89071 * 19 18 17 21 21 C 1.52999 * 112.38015 * 98.68999 * 20 19 18 22 22 C 1.48518 * 111.00100 * 176.80396 * 13 3 2 23 23 H 1.09004 * 109.47304 * 185.41101 * 1 2 3 24 24 H 1.09003 * 109.47600 * 305.41230 * 1 2 3 25 25 H 1.09000 * 109.47114 * 65.41323 * 1 2 3 26 26 H 1.08992 * 109.47574 * 239.99695 * 2 1 3 27 27 H 1.09006 * 109.47374 * 119.99426 * 2 1 3 28 28 H 0.97009 * 119.99366 * 180.02562 * 8 7 5 29 29 H 1.08996 * 110.38716 * 278.08312 * 14 13 3 30 30 H 1.09004 * 110.38832 * 40.35219 * 14 13 3 31 31 H 1.08998 * 109.47065 * 302.22250 * 16 15 14 32 32 H 1.09001 * 109.46827 * 62.22360 * 16 15 14 33 33 H 1.08993 * 109.47106 * 182.22000 * 16 15 14 34 34 H 1.09001 * 110.38797 * 254.75765 * 17 15 14 35 35 H 1.09002 * 110.38263 * 17.02123 * 17 15 14 36 36 H 1.00893 * 110.99926 * 200.72655 * 18 17 15 37 37 H 1.09004 * 110.64625 * 281.38703 * 19 18 17 38 38 H 1.09005 * 110.86884 * 158.50447 * 19 18 17 39 39 H 1.09005 * 109.46989 * 182.13102 * 21 20 19 40 40 H 1.09000 * 109.47427 * 62.13321 * 21 20 19 41 41 H 1.08998 * 109.47556 * 302.13412 * 21 20 19 42 42 H 1.08993 * 110.38718 * 81.91372 * 22 13 3 43 43 H 1.09007 * 110.38702 * 319.53399 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4425 -0.0100 5 6 1.5264 2.1568 -1.2236 6 1 0.9064 3.0346 -1.1160 7 6 1.8481 1.6898 -2.4804 8 7 2.6034 0.6211 -2.6112 9 14 1.2110 2.5747 -3.9969 10 1 0.3898 3.7403 -3.5816 11 1 2.3582 3.0444 -4.8145 12 1 0.3789 1.6436 -4.8005 13 7 1.5612 2.1312 1.2060 14 6 2.0762 1.4737 2.4342 15 6 1.9640 2.5517 3.5322 16 6 0.7032 2.3738 4.3806 17 6 3.2565 2.5588 4.3747 18 7 3.5902 3.9963 4.5416 19 6 3.2819 4.6052 3.2046 20 6 1.9799 3.9025 2.7673 21 6 0.7376 4.7500 3.0490 22 6 2.1002 3.5132 1.2792 23 1 -0.3634 -1.0231 0.0969 24 1 -0.3634 0.5955 0.8375 25 1 -0.3633 0.4276 -0.9345 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.8300 0.2928 -3.4955 29 1 1.4633 0.6086 2.6872 30 1 3.1155 1.1750 2.2976 31 1 -0.1756 2.4051 3.7365 32 1 0.7433 1.4132 4.8941 33 1 0.6437 3.1764 5.1156 34 1 3.0799 2.0946 5.3450 35 1 4.0568 2.0402 3.8466 36 1 4.5644 4.1167 4.7744 37 1 4.0823 4.3981 2.4942 38 1 3.1217 5.6796 3.2949 39 1 -0.1544 4.1952 2.7578 40 1 0.7922 5.6763 2.4771 41 1 0.6898 4.9822 4.1129 42 1 1.5055 4.1859 0.6613 43 1 3.1439 3.5308 0.9652 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702625329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:06 Heat of formation + Delta-G solvation = 4.648673 kcal Electronic energy + Delta-G solvation = -20522.602484 eV Core-core repulsion = 17795.189762 eV Total energy + Delta-G solvation = -2727.412722 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21771 -36.22711 -33.49411 -31.87001 -31.65772 -30.46211 -27.02484 -25.62114 -25.61158 -25.04995 -23.37459 -21.61829 -20.50665 -18.91102 -17.61630 -16.11556 -15.75637 -15.42602 -14.73400 -14.20586 -13.94970 -13.69826 -13.46341 -12.99119 -12.85589 -12.55401 -12.26080 -12.11357 -12.00542 -11.73696 -11.32312 -11.22879 -11.01367 -10.92684 -10.83901 -10.48553 -10.40893 -10.20401 -10.11625 -10.01939 -9.79839 -9.63777 -9.31657 -8.80251 -8.52449 -8.40140 -7.25556 -6.00180 -4.03241 3.28961 3.37381 3.41635 4.37079 4.41357 4.72067 4.74928 5.07298 5.28695 5.34970 5.40702 5.51576 5.52268 5.65813 5.77151 5.91341 5.97587 6.02905 6.10917 6.13894 6.21495 6.30853 6.40373 6.42667 6.46950 6.52569 6.58461 6.66471 6.69267 6.78521 6.83228 6.87354 7.13865 7.26466 7.35256 7.39757 7.61654 7.72151 7.84744 8.11443 8.34377 8.56560 9.02485 9.60787 11.06545 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.027514 B = 0.007023 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.415748 B = 3986.051702 C = 4315.966200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 C 0.207 3.793 4 H -0.004 1.004 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.495 5.495 14 C 0.042 3.958 15 C -0.059 4.059 16 C -0.119 4.119 17 C 0.043 3.957 18 N -0.665 5.665 19 C 0.041 3.959 20 C -0.063 4.063 21 C -0.119 4.119 22 C 0.058 3.942 23 H 0.014 0.986 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.011 0.989 28 H 0.259 0.741 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.039 0.961 36 H 0.328 0.672 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 4.269 11.889 12.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.147 4.147 3 C 0.101 3.899 4 H 0.013 0.987 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.219 5.219 14 C -0.087 4.087 15 C -0.060 4.060 16 C -0.176 4.176 17 C -0.086 4.086 18 N -0.292 5.292 19 C -0.089 4.089 20 C -0.064 4.064 21 C -0.176 4.176 22 C -0.071 4.071 23 H 0.033 0.967 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.142 0.858 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.108 4.353 12.066 12.875 hybrid contribution 1.572 -0.056 -1.602 2.245 sum 0.464 4.297 10.464 11.321 Atomic orbital electron populations 1.21450 0.97234 0.97211 1.01829 1.21512 0.95280 0.98057 0.99872 1.19440 0.92757 0.91251 0.86491 0.98653 1.21066 1.30781 1.11748 0.89557 0.92076 1.24905 0.95285 0.95111 0.98897 1.69897 1.37397 1.23106 1.22902 0.86533 0.78600 0.79767 0.83094 1.19746 1.21261 1.21063 1.65446 1.53763 1.00818 1.01906 1.23185 0.97717 0.96498 0.91333 1.21948 0.94477 0.94985 0.94564 1.21605 0.96706 1.00505 0.98815 1.23065 0.96411 0.89539 0.99633 1.64172 1.25322 1.11038 1.28656 1.23408 0.96533 0.99335 0.89576 1.22027 0.94494 0.94234 0.95683 1.21602 0.96899 0.98469 1.00651 1.23020 0.98016 0.93127 0.92916 0.96718 0.93465 0.92705 0.89215 0.97033 0.93135 0.91016 0.95172 0.91717 0.93399 0.92604 0.90572 0.94235 0.85767 0.93837 0.90378 0.91789 0.93277 0.92716 0.90529 0.94795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.47 37.15 0.35 -2.31 16 2 C -0.11 -2.61 5.25 -26.73 -0.14 -2.75 16 3 C 0.21 5.11 1.52 -68.86 -0.10 5.01 16 4 H 0.00 -0.11 7.98 -51.93 -0.41 -0.53 16 5 C -0.49 -13.17 6.95 -34.44 -0.24 -13.41 16 6 H 0.06 1.66 7.15 -52.49 -0.38 1.28 16 7 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 8 N -0.89 -25.24 11.33 55.43 0.63 -24.61 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.50 -10.35 4.35 -223.60 -0.97 -11.32 16 14 C 0.04 0.75 4.57 -2.26 -0.01 0.74 16 15 C -0.06 -0.89 1.06 -151.97 -0.16 -1.05 16 16 C -0.12 -1.62 7.54 37.16 0.28 -1.34 16 17 C 0.04 0.59 6.67 -2.26 -0.02 0.57 16 18 N -0.66 -8.58 7.66 -108.58 -0.83 -9.42 16 19 C 0.04 0.57 6.75 -1.36 -0.01 0.56 16 20 C -0.06 -0.98 1.05 -151.97 -0.16 -1.14 16 21 C -0.12 -1.68 7.54 37.16 0.28 -1.40 16 22 C 0.06 1.11 4.95 -2.25 -0.01 1.10 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.05 1.01 7.46 -51.93 -0.39 0.62 16 25 H 0.05 1.31 7.40 -51.93 -0.38 0.93 16 26 H 0.09 2.40 6.08 -51.93 -0.32 2.09 16 27 H 0.01 0.25 6.94 -51.93 -0.36 -0.11 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.07 1.30 7.39 -51.93 -0.38 0.91 16 30 H 0.03 0.58 7.01 -51.93 -0.36 0.21 16 31 H 0.06 0.94 7.17 -51.93 -0.37 0.57 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.72 7.20 -51.93 -0.37 0.35 16 34 H 0.08 0.95 7.92 -51.93 -0.41 0.54 16 35 H 0.04 0.56 7.20 -51.93 -0.37 0.19 16 36 H 0.33 3.63 8.93 -39.30 -0.35 3.28 16 37 H 0.04 0.64 7.16 -51.93 -0.37 0.26 16 38 H 0.08 1.01 7.90 -51.93 -0.41 0.59 16 39 H 0.06 0.95 7.13 -51.93 -0.37 0.58 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.72 7.24 -51.93 -0.38 0.34 16 42 H 0.08 1.54 7.32 -51.93 -0.38 1.16 16 43 H 0.03 0.70 6.95 -51.92 -0.36 0.34 16 LS Contribution 315.09 15.07 4.75 4.75 Total: -1.00 -27.54 315.09 -9.02 -36.56 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.54 Total: 1.71 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -0.03 Total: -13.91 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -1.18 Total: -45.35 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.54 -9.02 -36.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702625329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.210 kcal (2) G-P(sol) polarization free energy of solvation -27.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds