Wall clock time and date at job start Mon Mar 30 2020 03:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50740 * 109.73164 * 2 1 4 4 N 1.50186 * 102.14423 * 290.88802 * 3 2 1 5 5 C 1.49700 * 107.64809 * 334.70458 * 4 3 2 6 6 C 1.50140 * 104.74095 * 352.54980 * 5 4 3 7 7 C 1.53008 * 109.78196 * 279.74785 * 6 5 4 8 8 C 1.50757 * 126.47206 * 143.75467 * 6 5 4 9 9 N 1.50181 * 102.14716 * 205.14294 * 8 6 5 10 10 C 1.46896 * 111.00299 * 146.95246 * 9 8 6 11 11 C 1.52997 * 109.47114 * 170.00218 * 10 9 8 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99809 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99912 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47123 * 90.00333 * 17 15 13 19 19 H 1.48506 * 109.46940 * 210.00455 * 17 15 13 20 20 H 1.48493 * 109.47121 * 329.99876 * 17 15 13 21 21 C 1.49715 * 107.64448 * 25.28901 * 9 8 6 22 22 H 1.08995 * 109.47302 * 167.37405 * 1 2 3 23 23 H 1.09006 * 109.46884 * 287.37728 * 1 2 3 24 24 H 1.09000 * 109.47305 * 47.37403 * 1 2 3 25 25 H 1.08999 * 110.86400 * 49.04966 * 3 2 1 26 26 H 1.09000 * 110.87180 * 172.72589 * 3 2 1 27 27 H 1.00902 * 111.00211 * 213.03585 * 4 3 2 28 28 H 1.09000 * 110.38129 * 233.73200 * 5 4 3 29 29 H 1.08997 * 110.38285 * 111.36740 * 5 4 3 30 30 H 1.09003 * 109.46702 * 277.50815 * 7 6 5 31 31 H 1.08994 * 109.46930 * 37.50704 * 7 6 5 32 32 H 1.08993 * 109.47083 * 157.51175 * 7 6 5 33 33 H 1.08994 * 110.87023 * 86.97852 * 8 6 5 34 34 H 1.09002 * 111.04333 * 323.38323 * 8 6 5 35 35 H 1.08996 * 109.47194 * 50.00386 * 10 9 8 36 36 H 1.09001 * 109.47271 * 289.99949 * 10 9 8 37 37 H 1.09001 * 109.47502 * 60.00479 * 11 10 9 38 38 H 1.09001 * 109.47289 * 300.00275 * 11 10 9 39 39 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 40 40 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 41 41 H 0.97004 * 119.99097 * 179.97438 * 16 15 13 42 42 H 1.09000 * 110.38329 * 126.27713 * 21 9 8 43 43 H 1.08999 * 110.38432 * 248.64205 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0389 1.4189 0.0000 4 7 1.6528 1.8930 -1.3718 5 6 1.5554 0.6898 -2.2571 6 6 2.0711 -0.4440 -1.4189 7 6 3.6011 -0.4362 -1.4220 8 6 1.5611 -1.8627 -1.4191 9 7 1.9466 -2.3373 -0.0474 10 6 0.9629 -3.2957 0.4739 11 6 1.5069 -3.9419 1.7495 12 6 0.4826 -4.9406 2.2921 13 6 1.0182 -5.5767 3.5489 14 1 1.9920 -5.2970 3.9230 15 6 0.2655 -6.5165 4.2206 16 7 0.7332 -7.0720 5.3172 17 14 -1.4184 -7.0009 3.5732 18 1 -1.2785 -8.1451 2.6371 19 1 -2.2910 -7.3940 4.7087 20 1 -2.0244 -5.8485 2.8592 21 6 2.0448 -1.1341 0.8381 22 1 -0.3633 -1.0028 -0.2246 23 1 -0.3633 0.3069 0.9808 24 1 -0.3634 0.6959 -0.7561 25 1 1.5416 2.0097 0.7693 26 1 3.1210 1.4434 0.1290 27 1 2.3279 2.5519 -1.7299 28 1 2.1762 0.8196 -3.1436 29 1 0.5186 0.5108 -2.5416 30 1 3.9651 -0.9316 -2.3222 31 1 3.9592 0.5931 -1.4037 32 1 3.9690 -0.9646 -0.5425 33 1 2.0580 -2.4538 -2.1883 34 1 0.4793 -1.8897 -1.5495 35 1 0.7762 -4.0672 -0.2730 36 1 0.0322 -2.7749 0.6990 37 1 1.6936 -3.1704 2.4966 38 1 2.4377 -4.4627 1.5246 39 1 -0.4483 -4.4202 2.5171 40 1 0.2963 -5.7120 1.5450 41 1 0.2034 -7.7330 5.7899 42 1 1.4238 -1.2634 1.7246 43 1 3.0817 -0.9557 1.1227 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705598488.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:11 Heat of formation + Delta-G solvation = 28.262041 kcal Electronic energy + Delta-G solvation = -19691.651101 eV Core-core repulsion = 16965.262331 eV Total energy + Delta-G solvation = -2726.388770 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.75588 -36.69087 -33.95435 -32.17373 -31.87693 -30.27210 -28.55520 -26.99180 -26.50966 -24.81305 -23.52348 -21.20585 -20.21315 -19.96462 -18.28265 -16.67673 -16.40493 -15.67807 -15.54258 -15.37533 -14.43945 -14.17505 -13.86461 -13.16261 -13.12546 -12.72418 -12.55484 -12.44914 -12.36849 -12.12566 -12.06879 -11.90970 -11.75254 -11.46911 -11.10371 -10.99018 -10.88863 -10.70597 -10.44398 -9.99743 -9.80820 -9.66152 -9.53882 -9.14142 -8.77393 -8.50773 -8.13791 -6.01307 -3.98758 3.32302 3.39422 3.43207 3.69675 3.86481 4.03169 4.47685 4.51213 4.89042 4.96649 5.00600 5.09677 5.13098 5.32657 5.35519 5.47171 5.50270 5.53225 5.59205 5.62859 5.69734 5.73015 5.81719 5.83924 5.86805 6.00362 6.08069 6.14192 6.17849 6.25352 6.31100 6.42558 6.56161 6.59333 6.90280 7.04603 7.05560 7.25529 7.39219 7.49920 7.83598 8.58412 9.04505 9.61558 11.12355 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.042102 B = 0.004382 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.896207 B = 6387.520681 C = 6457.481733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 C 0.067 3.933 4 N -0.677 5.677 5 C 0.070 3.930 6 C -0.112 4.112 7 C -0.137 4.137 8 C 0.063 3.937 9 N -0.517 5.517 10 C 0.045 3.955 11 C -0.095 4.095 12 C -0.013 4.013 13 C -0.517 4.517 14 H 0.071 0.929 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.267 1.267 21 C 0.063 3.937 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.335 0.665 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.031 0.969 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.012 0.988 40 H 0.010 0.990 41 H 0.262 0.738 42 H 0.070 0.930 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.096 17.196 -15.631 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 C -0.062 4.062 4 N -0.305 5.305 5 C -0.060 4.060 6 C -0.114 4.114 7 C -0.194 4.194 8 C -0.065 4.065 9 N -0.240 5.240 10 C -0.083 4.083 11 C -0.133 4.133 12 C -0.051 4.051 13 C -0.555 4.555 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.191 1.191 21 C -0.065 4.065 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.031 0.969 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.822 16.857 -15.377 22.889 hybrid contribution -0.744 -0.259 -0.289 0.839 sum 1.078 16.598 -15.666 22.849 Atomic orbital electron populations 1.22001 0.93509 1.02028 1.02418 1.21983 0.97055 0.95093 0.96755 1.22108 0.98583 0.94051 0.91413 1.63493 1.51890 1.13198 1.01954 1.21836 1.01206 0.88582 0.94328 1.21978 0.96967 0.95601 0.96864 1.21922 0.93429 1.00759 1.03253 1.22317 0.98763 0.92911 0.92505 1.65295 1.46605 1.11568 1.00570 1.22504 0.92609 0.94604 0.98570 1.21439 0.99942 0.98352 0.93537 1.19554 0.94853 0.94273 0.96431 1.21151 1.04874 1.22069 1.07433 0.91051 1.25039 0.97975 0.95838 0.94720 1.69927 1.38121 1.28655 1.17737 0.86772 0.84718 0.79182 0.78559 1.20310 1.21437 1.19124 1.22107 1.01394 0.87764 0.95242 0.92660 0.92539 0.91156 0.90113 0.92950 0.85086 0.92315 0.90505 0.92572 0.93703 0.90602 0.90309 0.92861 0.91360 0.95048 0.92947 0.92091 0.96949 0.97148 0.92808 0.91200 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 7.84 37.16 0.29 -1.36 16 2 C -0.11 -1.18 1.12 -154.20 -0.17 -1.35 16 3 C 0.07 0.65 6.35 -3.11 -0.02 0.63 16 4 N -0.68 -6.08 6.88 -111.80 -0.77 -6.85 16 5 C 0.07 0.63 6.03 -3.68 -0.02 0.61 16 6 C -0.11 -1.15 1.12 -154.18 -0.17 -1.32 16 7 C -0.14 -1.35 7.72 37.16 0.29 -1.06 16 8 C 0.06 0.75 5.48 -3.11 -0.02 0.73 16 9 N -0.52 -7.35 4.83 -232.39 -1.12 -8.47 16 10 C 0.04 0.74 4.42 -3.83 -0.02 0.73 16 11 C -0.09 -1.92 5.19 -26.73 -0.14 -2.06 16 12 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 13 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 14 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 15 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 16 N -0.91 -28.36 13.96 55.43 0.77 -27.59 16 17 Si 0.88 22.07 27.47 -169.99 -4.67 17.41 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 21 C 0.06 0.82 4.85 -3.68 -0.02 0.81 16 22 H 0.05 0.69 4.64 -51.93 -0.24 0.45 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.80 6.10 -51.93 -0.32 0.48 16 25 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 26 H 0.05 0.47 6.66 -51.93 -0.35 0.13 16 27 H 0.33 2.46 8.94 -39.29 -0.35 2.11 16 28 H 0.06 0.46 7.97 -51.93 -0.41 0.05 16 29 H 0.08 0.73 7.22 -51.93 -0.37 0.36 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.40 6.53 -51.93 -0.34 0.06 16 32 H 0.08 0.87 5.85 -51.93 -0.30 0.57 16 33 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 34 H 0.05 0.64 6.17 -51.93 -0.32 0.32 16 35 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 36 H 0.03 0.52 6.80 -51.93 -0.35 0.16 16 37 H 0.05 1.07 6.99 -51.93 -0.36 0.70 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 40 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 42 H 0.07 1.02 6.62 -51.93 -0.34 0.68 16 43 H 0.08 1.00 6.97 -51.93 -0.36 0.64 16 LS Contribution 310.47 15.07 4.68 4.68 Total: -1.00 -30.34 310.47 -8.97 -39.30 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.31 Total: -0.84 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -0.54 Total: -17.65 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: -1.12 Total: -42.90 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.34 -8.97 -39.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705598488.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.567 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds