Wall clock time and date at job start Mon Mar 30 2020 03:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.51383 * 111.21202 * 2 1 4 4 N 1.50110 * 102.37177 * 71.50512 * 3 2 1 5 5 C 1.49775 * 107.62449 * 25.79846 * 4 3 2 6 6 C 1.49479 * 104.56140 * 6.76691 * 5 4 3 7 7 C 1.52993 * 108.56931 * 76.58532 * 6 5 4 8 8 C 1.49478 * 129.09640 * 211.48285 * 6 5 4 9 9 N 1.49776 * 104.56106 * 148.51121 * 8 6 5 10 10 C 1.46898 * 110.99875 * 114.88326 * 9 8 6 11 11 C 1.53002 * 109.47267 * 169.99934 * 10 9 8 12 12 C 1.52998 * 109.47200 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47001 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00251 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00188 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99485 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00236 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47287 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47316 * 119.99795 * 17 15 13 20 20 H 1.48507 * 109.47391 * 239.99840 * 17 15 13 21 21 C 1.50116 * 107.62186 * 353.23851 * 9 8 6 22 22 H 1.09000 * 109.47347 * 311.71034 * 1 2 3 23 23 H 1.09003 * 109.47348 * 71.70845 * 1 2 3 24 24 H 1.09003 * 109.47377 * 191.71519 * 1 2 3 25 25 H 1.08997 * 110.82432 * 313.27950 * 3 2 1 26 26 H 1.08997 * 110.82446 * 189.72514 * 3 2 1 27 27 H 1.00900 * 110.99634 * 264.15299 * 4 3 2 28 28 H 1.08998 * 110.41998 * 247.99575 * 5 4 3 29 29 H 1.08996 * 110.41846 * 125.53767 * 5 4 3 30 30 H 1.09001 * 109.47478 * 197.51055 * 7 6 5 31 31 H 1.08996 * 109.47295 * 317.51467 * 7 6 5 32 32 H 1.09003 * 109.47080 * 77.51143 * 7 6 5 33 33 H 1.08996 * 110.41519 * 29.74261 * 8 6 5 34 34 H 1.08992 * 110.41863 * 267.28323 * 8 6 5 35 35 H 1.08996 * 109.47460 * 289.99967 * 10 9 8 36 36 H 1.09000 * 109.46979 * 50.00311 * 10 9 8 37 37 H 1.09000 * 109.47367 * 300.00569 * 11 10 9 38 38 H 1.09000 * 109.46812 * 60.00276 * 11 10 9 39 39 H 1.08996 * 109.47135 * 299.99793 * 12 11 10 40 40 H 1.09000 * 109.47371 * 60.00178 * 12 11 10 41 41 H 0.96998 * 119.99463 * 179.97438 * 16 15 13 42 42 H 1.09001 * 110.82508 * 92.41778 * 21 9 8 43 43 H 1.09006 * 110.82746 * 215.97580 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0777 1.4113 0.0000 4 7 1.7604 1.8794 1.3905 5 6 1.6782 0.6690 2.2688 6 6 2.1177 -0.4607 1.3940 7 6 3.6409 -0.4095 1.2607 8 6 1.6897 -1.8927 1.4174 9 7 1.7793 -2.3358 -0.0104 10 6 2.8111 -3.3680 -0.1775 11 6 2.7066 -3.9714 -1.5797 12 6 3.7808 -5.0469 -1.7535 13 6 3.6783 -5.6407 -3.1348 14 1 2.9222 -5.2866 -3.8200 15 6 4.5496 -6.6359 -3.5238 16 7 5.4705 -7.0666 -2.6895 17 14 4.4230 -7.3714 -5.2362 18 1 3.3125 -6.7181 -5.9747 19 1 5.6985 -7.1527 -5.9644 20 1 4.1568 -8.8286 -5.1307 21 6 2.0890 -1.1259 -0.8432 22 1 -0.3634 0.6838 0.7672 23 1 -0.3634 0.3225 -0.9757 24 1 -0.3634 -1.0063 0.2087 25 1 1.5668 2.0252 -0.7417 26 1 3.1540 1.4092 -0.1721 27 1 0.8955 2.3987 1.4086 28 1 0.6535 0.5125 2.6057 29 1 2.3484 0.7721 3.1221 30 1 3.9511 -1.0079 0.4041 31 1 3.9586 0.6232 1.1166 32 1 4.0985 -0.8073 2.1666 33 1 0.6647 -1.9773 1.7783 34 1 2.3631 -2.4806 2.0410 35 1 3.7966 -2.9212 -0.0468 36 1 2.6655 -4.1511 0.5666 37 1 1.7210 -4.4182 -1.7105 38 1 2.8522 -3.1884 -2.3239 39 1 4.7665 -4.6004 -1.6226 40 1 3.6348 -5.8298 -1.0093 41 1 6.0833 -7.7670 -2.9631 42 1 3.1649 -1.0125 -0.9770 43 1 1.5811 -1.1779 -1.8063 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705598489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:13 Heat of formation + Delta-G solvation = 9.485594 kcal Electronic energy + Delta-G solvation = -19655.031449 eV Core-core repulsion = 16927.828471 eV Total energy + Delta-G solvation = -2727.202978 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.76825 -37.82132 -35.73565 -33.80542 -32.77747 -31.37591 -29.57639 -28.24790 -27.41271 -25.95346 -24.90554 -22.92946 -21.67722 -21.06822 -19.19284 -18.49006 -17.25801 -16.79639 -16.61637 -16.35816 -16.17441 -15.75967 -14.83349 -14.54075 -14.51114 -13.90038 -13.66414 -13.61628 -13.35411 -13.22656 -13.09953 -12.92074 -12.82680 -12.80887 -12.51212 -12.46173 -12.17042 -11.93153 -11.86863 -11.50542 -11.38454 -11.28216 -11.06636 -10.75525 -10.56867 -9.57611 -9.21407 -8.21392 -6.32458 1.39096 1.39402 1.53128 2.40005 2.81314 2.89924 3.11762 3.20615 3.61148 3.99987 4.08864 4.13514 4.15635 4.22316 4.25856 4.39631 4.55765 4.61632 4.65586 4.68929 4.72461 4.75052 4.82792 4.89831 4.92434 4.96811 5.02219 5.04174 5.08442 5.16407 5.23160 5.27494 5.32774 5.46943 5.50816 5.63300 5.71412 5.84310 5.90769 6.03818 6.26198 6.46121 6.84247 7.36901 8.90840 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.044232 B = 0.004143 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.868825 B = 6757.218613 C = 6922.343743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.110 4.110 3 C 0.066 3.934 4 N -0.680 5.680 5 C 0.080 3.920 6 C -0.112 4.112 7 C -0.156 4.156 8 C 0.068 3.932 9 N -0.524 5.524 10 C 0.062 3.938 11 C -0.085 4.085 12 C 0.026 3.974 13 C -0.542 4.542 14 H 0.058 0.942 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 C 0.059 3.941 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.348 0.652 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.026 0.974 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.045 0.955 39 H -0.011 1.011 40 H -0.009 1.009 41 H 0.264 0.736 42 H 0.050 0.950 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.673 18.031 8.989 22.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.112 4.112 3 C -0.063 4.063 4 N -0.309 5.309 5 C -0.049 4.049 6 C -0.114 4.114 7 C -0.213 4.213 8 C -0.059 4.059 9 N -0.248 5.248 10 C -0.066 4.066 11 C -0.123 4.123 12 C -0.012 4.012 13 C -0.580 4.580 14 H 0.076 0.924 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.790 3.210 18 H -0.186 1.186 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.069 4.069 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.164 0.836 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.007 0.993 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.341 17.888 9.041 22.113 hybrid contribution 0.449 -1.036 -0.844 1.410 sum -8.892 16.852 8.197 20.742 Atomic orbital electron populations 1.21645 0.92200 1.02445 1.01994 1.22521 0.97285 0.95630 0.95789 1.22374 1.01085 0.92170 0.90662 1.63284 1.39800 1.21036 1.06763 1.21587 1.01017 0.87161 0.95132 1.21717 0.96443 0.95663 0.97569 1.22403 0.94925 1.02645 1.01291 1.21900 1.01851 0.92841 0.89353 1.65236 1.44553 1.09016 1.05966 1.22218 0.92346 0.94231 0.97817 1.21317 0.98719 0.97235 0.95041 1.18972 0.93440 0.93326 0.95414 1.21705 1.16043 1.19972 1.00254 0.92387 1.25990 0.94809 0.97175 1.01855 1.70108 1.19888 1.29841 1.37591 0.85387 0.78325 0.78170 0.79101 1.18638 1.20250 1.20243 1.22514 0.98825 0.88784 0.96750 0.91770 0.92095 0.92236 0.89890 0.90551 0.83623 0.91436 0.90227 0.93681 0.90877 0.92844 0.89518 0.92368 0.95627 0.91682 0.93145 0.93587 0.99291 0.99039 0.92754 0.93233 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.31 71.98 0.60 -1.66 16 2 C -0.11 -2.22 1.08 -51.41 -0.06 -2.27 16 3 C 0.07 1.16 6.28 85.14 0.53 1.69 16 4 N -0.68 -10.77 7.10 -507.64 -3.61 -14.38 16 5 C 0.08 1.31 6.09 84.62 0.52 1.82 16 6 C -0.11 -2.28 1.29 -52.60 -0.07 -2.35 16 7 C -0.16 -3.58 7.36 71.98 0.53 -3.05 16 8 C 0.07 1.62 5.39 84.61 0.46 2.08 16 9 N -0.52 -15.39 4.82 -889.18 -4.29 -19.68 16 10 C 0.06 2.23 4.54 86.30 0.39 2.62 16 11 C -0.09 -3.68 5.22 30.59 0.16 -3.52 16 12 C 0.03 1.42 4.97 29.85 0.15 1.57 16 13 C -0.54 -31.77 9.11 25.60 0.23 -31.53 16 14 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 15 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 16 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 17 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 18 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 C 0.06 1.57 4.63 85.14 0.39 1.96 16 22 H 0.06 0.92 6.20 -2.39 -0.01 0.90 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.06 1.26 6.57 -2.39 -0.02 1.24 16 25 H 0.08 1.23 8.13 -2.39 -0.02 1.21 16 26 H 0.08 1.51 6.16 -2.39 -0.01 1.50 16 27 H 0.35 4.25 8.49 -89.69 -0.76 3.49 16 28 H 0.07 0.94 7.46 -2.39 -0.02 0.92 16 29 H 0.08 1.32 7.98 -2.39 -0.02 1.30 16 30 H 0.04 1.22 3.84 -2.39 -0.01 1.21 16 31 H 0.07 1.61 5.76 -2.39 -0.01 1.60 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.88 7.47 -2.39 -0.02 1.87 16 34 H 0.06 1.44 7.42 -2.39 -0.02 1.42 16 35 H 0.03 0.94 6.53 -2.39 -0.02 0.92 16 36 H 0.06 2.36 7.99 -2.39 -0.02 2.34 16 37 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.05 1.96 7.54 -2.39 -0.02 1.94 16 39 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 40 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.05 1.44 5.60 -2.39 -0.01 1.42 16 43 H 0.07 2.04 8.13 -2.38 -0.02 2.02 16 Total: -1.00 -64.07 313.85 -1.06 -65.13 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.22 Total: 11.62 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 4.30 Total: -32.21 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -7.61 Total: -91.60 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -64.07 -1.06 -65.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705598489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.617 kcal (2) G-P(sol) polarization free energy of solvation -64.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds