Wall clock time and date at job start Mon Mar 30 2020 03:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.50083 * 110.99652 * 2 1 4 4 C 1.51428 * 102.34743 * 212.46351 * 3 2 1 5 5 C 1.52996 * 111.42854 * 287.34348 * 4 3 2 6 6 C 1.51589 * 123.73178 * 150.11732 * 4 3 2 7 7 N 1.50218 * 102.05296 * 208.51330 * 6 4 3 8 8 C 1.46902 * 111.00134 * 148.27250 * 7 6 4 9 9 C 1.52998 * 109.47376 * 169.99944 * 8 7 6 10 10 C 1.50698 * 109.47027 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00456 * 0.27555 * 10 9 8 12 12 C 1.37880 * 119.99964 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00134 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00194 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47271 * 90.00170 * 14 12 10 16 16 H 1.48500 * 109.47025 * 210.00318 * 14 12 10 17 17 H 1.48507 * 109.47105 * 330.00108 * 14 12 10 18 18 C 1.49949 * 107.44751 * 26.73693 * 7 6 4 19 19 C 1.49773 * 104.36907 * 6.72678 * 18 7 6 20 20 C 1.53001 * 108.40706 * 77.39543 * 19 18 7 21 21 C 1.49635 * 128.35646 * 211.76227 * 19 18 7 22 22 H 1.09005 * 109.46998 * 60.00006 * 1 2 3 23 23 H 1.09002 * 109.47024 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47089 * 299.99944 * 1 2 3 25 25 H 1.09000 * 110.83013 * 94.25070 * 3 2 1 26 26 H 1.09001 * 111.00754 * 330.75407 * 3 2 1 27 27 H 1.09004 * 109.47384 * 278.36794 * 5 4 3 28 28 H 1.09001 * 109.46840 * 38.36807 * 5 4 3 29 29 H 1.09000 * 109.47334 * 158.36542 * 5 4 3 30 30 H 1.09000 * 110.91682 * 90.32647 * 6 4 3 31 31 H 1.08997 * 110.91825 * 326.69941 * 6 4 3 32 32 H 1.08997 * 109.47116 * 49.99627 * 8 7 6 33 33 H 1.09003 * 109.47191 * 290.00067 * 8 7 6 34 34 H 1.09005 * 109.47038 * 60.00026 * 9 8 7 35 35 H 1.08998 * 109.47079 * 299.99730 * 9 8 7 36 36 H 0.96993 * 120.00608 * 179.97438 * 13 12 10 37 37 H 1.09000 * 110.46033 * 125.44561 * 18 7 6 38 38 H 1.08999 * 110.45816 * 248.00273 * 18 7 6 39 39 H 1.09000 * 109.47072 * 315.27440 * 20 19 18 40 40 H 1.08999 * 109.46651 * 75.27072 * 20 19 18 41 41 H 1.08993 * 109.47140 * 195.27220 * 20 19 18 42 42 H 1.09002 * 110.41937 * 28.78932 * 21 19 18 43 43 H 1.08994 * 110.51976 * 266.38187 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0068 1.4012 0.0000 4 6 3.2881 1.2563 -0.7940 5 6 4.3652 0.5267 0.0112 6 6 3.8840 2.3641 -1.6399 7 7 4.6137 1.5906 -2.7010 8 6 4.6248 2.3244 -3.9736 9 6 5.5779 1.6347 -4.9517 10 6 5.5888 2.3871 -6.2573 11 1 4.9805 3.2716 -6.3761 12 6 6.3801 1.9500 -7.2984 13 7 7.1251 0.8761 -7.1521 14 14 6.3942 2.8830 -8.9166 15 1 7.4517 3.9249 -8.8781 16 1 6.6693 1.9393 -10.0297 17 1 5.0727 3.5266 -9.1284 18 6 3.9222 0.2684 -2.8491 19 6 2.7064 0.3856 -1.9823 20 6 1.6641 1.2257 -2.7230 21 6 2.0057 -0.6912 -1.2151 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 2.2162 1.7360 1.0160 26 1 1.3179 2.0841 -0.4971 27 1 4.8545 1.2303 0.6847 28 1 3.9053 -0.2726 0.5923 29 1 5.1030 0.1025 -0.6698 30 1 4.5759 2.9706 -1.0555 31 1 3.1012 2.9829 -2.0785 32 1 4.9593 3.3472 -3.8003 33 1 3.6193 2.3374 -4.3943 34 1 5.2433 0.6119 -5.1249 35 1 6.5834 1.6218 -4.5310 36 1 7.6815 0.5683 -7.8845 37 1 3.6350 0.1028 -3.8875 38 1 4.5644 -0.5390 -2.4973 39 1 2.1468 2.0984 -3.1628 40 1 1.2083 0.6267 -3.5114 41 1 0.8947 1.5504 -2.0226 42 1 2.7090 -1.4730 -0.9282 43 1 1.1907 -1.1116 -1.8043 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706257972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:18 Heat of formation + Delta-G solvation = 20.307140 kcal Electronic energy + Delta-G solvation = -20042.017135 eV Core-core repulsion = 17315.283415 eV Total energy + Delta-G solvation = -2726.733720 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.77291 -38.02636 -35.49817 -33.74621 -32.72647 -30.96913 -29.50753 -27.80472 -27.45381 -26.83649 -24.78805 -23.05070 -21.67575 -21.02457 -19.37459 -18.51746 -16.77806 -16.68646 -16.50171 -16.46468 -16.35586 -15.38377 -15.03260 -14.46561 -14.22548 -14.17852 -13.67345 -13.45241 -13.40303 -13.19813 -13.05139 -12.92133 -12.90178 -12.71788 -12.54072 -12.46591 -12.36742 -12.04982 -11.79228 -11.75616 -11.37979 -11.32276 -11.16381 -10.72044 -10.55389 -9.43416 -9.07318 -8.20709 -6.32511 1.38813 1.40564 1.51310 2.39063 2.82533 2.94261 3.02758 3.12545 3.67576 3.96020 4.02875 4.13327 4.22997 4.28243 4.38538 4.40610 4.50552 4.51650 4.56964 4.62422 4.73774 4.74671 4.77483 4.88736 4.92035 4.96349 5.02923 5.06798 5.10497 5.13639 5.17704 5.33068 5.33467 5.44348 5.53664 5.62120 5.77460 5.79150 5.99129 6.07582 6.14329 6.31431 6.84705 7.36737 8.91492 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041715 B = 0.004770 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.054547 B = 5868.466215 C = 6002.259125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.527 5.527 3 C 0.063 3.937 4 C -0.081 4.081 5 C -0.118 4.118 6 C 0.056 3.944 7 N -0.530 5.530 8 C 0.074 3.926 9 C 0.040 3.960 10 C -0.545 4.545 11 H 0.059 0.941 12 C 0.002 3.998 13 N -0.931 5.931 14 Si 0.966 3.034 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.073 3.927 19 C -0.121 4.121 20 C -0.153 4.153 21 C 0.072 3.928 22 H 0.027 0.973 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.023 0.977 34 H -0.010 1.010 35 H -0.010 1.010 36 H 0.264 0.736 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.586 -0.235 15.151 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.251 5.251 3 C -0.064 4.064 4 C -0.082 4.082 5 C -0.175 4.175 6 C -0.071 4.071 7 N -0.254 5.254 8 C -0.054 4.054 9 C 0.003 3.997 10 C -0.583 4.583 11 H 0.077 0.923 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.790 3.210 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.188 1.188 18 C -0.055 4.055 19 C -0.123 4.123 20 C -0.210 4.210 21 C -0.055 4.055 22 H 0.046 0.954 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.112 0.888 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.009 0.991 35 H 0.008 0.992 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.797 -0.676 15.672 20.244 hybrid contribution -0.616 0.773 -2.282 2.487 sum -13.413 0.096 13.389 18.952 Atomic orbital electron populations 1.22629 0.87000 1.02671 1.01100 1.65258 1.08841 1.13731 1.37233 1.22561 0.93569 0.89829 1.00480 1.22004 0.95796 0.96102 0.94275 1.21532 0.96914 1.00141 0.98895 1.22666 0.96675 0.95135 0.92660 1.65350 1.50112 1.03013 1.06910 1.22108 0.97409 0.96961 0.88894 1.18866 0.93727 0.94544 0.92595 1.21616 1.25856 1.11920 0.98939 0.92310 1.25957 0.94794 0.95947 1.02855 1.70113 1.28230 1.25058 1.33746 0.85442 0.78924 0.78323 0.78309 1.19689 1.20662 1.18755 1.21844 0.93197 0.92769 0.97661 1.21933 0.95381 0.98840 0.96156 1.22359 0.98606 0.99738 1.00252 1.21884 0.98575 0.95366 0.89709 0.95441 0.90679 0.90251 0.88840 0.92242 0.92009 0.91328 0.93480 0.89945 0.92745 0.92204 0.95902 0.99144 0.99198 0.92751 0.94091 0.91192 0.93283 0.92879 0.90832 0.90231 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.12 127.69 1.16 1.39 16 2 N -0.53 -10.30 5.05 -915.12 -4.62 -14.92 16 3 C 0.06 1.23 5.45 85.17 0.46 1.69 16 4 C -0.08 -1.94 1.06 -51.24 -0.05 -1.99 16 5 C -0.12 -2.85 8.31 71.98 0.60 -2.26 16 6 C 0.06 1.59 5.47 85.19 0.47 2.06 16 7 N -0.53 -19.51 4.91 -887.39 -4.36 -23.87 16 8 C 0.07 3.23 4.32 86.30 0.37 3.60 16 9 C 0.04 2.21 5.02 29.85 0.15 2.36 16 10 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 11 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 12 C 0.00 0.15 5.46 84.66 0.46 0.61 16 13 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 14 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 18 C 0.07 2.51 4.86 84.67 0.41 2.93 16 19 C -0.12 -3.16 1.22 -52.37 -0.06 -3.22 16 20 C -0.15 -3.91 7.39 71.98 0.53 -3.38 16 21 C 0.07 1.60 5.47 84.67 0.46 2.06 16 22 H 0.03 0.43 6.71 -2.38 -0.02 0.41 16 23 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 24 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.09 1.63 8.12 -2.39 -0.02 1.62 16 26 H 0.06 1.12 5.87 -2.39 -0.01 1.10 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.56 7.01 -2.39 -0.02 1.55 16 29 H 0.05 1.35 6.32 -2.39 -0.02 1.34 16 30 H 0.08 2.26 8.13 -2.39 -0.02 2.24 16 31 H 0.05 1.52 5.86 -2.39 -0.01 1.50 16 32 H 0.06 2.56 8.09 -2.39 -0.02 2.54 16 33 H 0.02 0.98 6.57 -2.39 -0.02 0.96 16 34 H -0.01 -0.58 7.03 -2.38 -0.02 -0.60 16 35 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 36 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.04 1.61 6.65 -2.39 -0.02 1.59 16 38 H 0.07 2.44 7.23 -2.39 -0.02 2.42 16 39 H 0.05 1.44 4.03 -2.39 -0.01 1.43 16 40 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 1.59 4.09 -2.39 -0.01 1.58 16 42 H 0.08 1.81 7.79 -2.39 -0.02 1.79 16 43 H 0.07 1.39 7.49 -2.39 -0.02 1.38 16 Total: -1.00 -64.29 310.10 -0.50 -64.78 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.98 Total: 10.38 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 5.20 Total: -25.63 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -8.70 Total: -96.34 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.29 -0.50 -64.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706257972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.090 kcal (2) G-P(sol) polarization free energy of solvation -64.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds