Wall clock time and date at job start Mon Mar 30 2020 04:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47025 * 2 1 4 4 H 1.09002 * 109.47472 * 178.06476 * 3 2 1 5 5 C 1.50698 * 109.47237 * 58.05907 * 3 2 1 6 6 H 1.08000 * 120.00360 * 239.99937 * 5 3 2 7 7 C 1.37879 * 119.99719 * 60.00273 * 5 3 2 8 8 N 1.31517 * 120.00068 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00128 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47388 * 90.00030 * 9 7 5 11 11 H 1.48503 * 109.47137 * 210.00213 * 9 7 5 12 12 H 1.48500 * 109.46959 * 329.99901 * 9 7 5 13 13 N 1.46907 * 109.46833 * 298.06129 * 3 2 1 14 14 C 1.47894 * 111.00223 * 298.91449 * 13 3 2 15 15 C 1.55022 * 104.86529 * 213.77062 * 14 13 3 16 16 C 1.54494 * 101.59873 * 36.42116 * 15 14 13 17 17 C 1.47609 * 110.99751 * 178.10193 * 13 3 2 18 18 C 1.52335 * 110.18296 * 206.52077 * 16 15 14 19 19 C 1.53264 * 109.22309 * 293.46910 * 18 16 15 20 20 C 1.53046 * 109.17480 * 303.49247 * 19 18 16 21 21 N 1.46853 * 109.65526 * 59.75112 * 20 19 18 22 22 C 1.46986 * 111.12523 * 297.72102 * 21 20 19 23 23 H 1.09001 * 109.46732 * 178.73508 * 1 2 3 24 24 H 1.08999 * 109.47297 * 298.73788 * 1 2 3 25 25 H 1.09000 * 109.47083 * 58.73932 * 1 2 3 26 26 H 1.08997 * 109.47062 * 240.00093 * 2 1 3 27 27 H 1.08996 * 109.47148 * 119.99975 * 2 1 3 28 28 H 0.96998 * 120.00415 * 180.02562 * 8 7 5 29 29 H 1.08997 * 110.36139 * 332.61131 * 14 13 3 30 30 H 1.08998 * 110.36249 * 94.91844 * 14 13 3 31 31 H 1.09008 * 111.00155 * 278.34300 * 15 14 13 32 32 H 1.08999 * 111.03850 * 154.51363 * 15 14 13 33 33 H 1.09004 * 109.91362 * 243.05208 * 17 13 3 34 34 H 1.09000 * 109.91821 * 4.33491 * 17 13 3 35 35 H 1.09002 * 109.51164 * 53.39010 * 18 16 15 36 36 H 1.08995 * 109.51760 * 173.54515 * 18 16 15 37 37 H 1.08998 * 109.52147 * 183.58389 * 19 18 16 38 38 H 1.09000 * 109.56926 * 63.42974 * 19 18 16 39 39 H 1.09006 * 109.43807 * 299.70056 * 20 19 18 40 40 H 1.09004 * 109.41248 * 179.79424 * 20 19 18 41 41 H 1.00901 * 111.00128 * 173.67067 * 21 20 19 42 42 H 1.08998 * 109.44269 * 300.44493 * 22 21 20 43 43 H 1.08999 * 109.42207 * 180.52969 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4428 0.0347 5 6 1.4988 2.1667 1.2057 6 1 0.8815 3.0435 1.0769 7 6 1.7917 1.7099 2.4732 8 7 2.5439 0.6425 2.6300 9 14 1.1215 2.6078 3.9677 10 1 -0.1992 2.0378 4.3368 11 1 2.0641 2.4495 5.1043 12 1 0.9668 4.0503 3.6503 13 7 1.5889 2.1213 -1.2223 14 6 2.1232 1.4522 -2.4281 15 6 2.3563 2.5966 -3.4475 16 6 2.8326 3.7414 -2.5259 17 6 2.0249 3.5315 -1.2358 18 6 2.5056 5.0910 -3.1521 19 6 3.3408 5.2727 -4.4243 20 6 4.8243 5.1303 -4.0762 21 7 5.0725 3.8000 -3.5060 22 6 4.3250 3.6123 -2.2544 23 1 -0.3633 -1.0274 -0.0227 24 1 -0.3634 0.4941 0.9011 25 1 -0.3633 0.5333 -0.8785 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.7497 0.3208 3.5216 29 1 3.0637 0.9514 -2.1987 30 1 1.3979 0.7384 -2.8186 31 1 1.4288 2.8634 -3.9544 32 1 3.1291 2.3277 -4.1677 33 1 1.1555 4.1890 -1.2308 34 1 2.6522 3.7345 -0.3678 35 1 1.4457 5.1282 -3.4040 36 1 2.7407 5.8869 -2.4455 37 1 3.1580 6.2628 -4.8417 38 1 3.0635 4.5126 -5.1547 39 1 5.1013 5.8940 -3.3494 40 1 5.4219 5.2553 -4.9793 41 1 6.0595 3.6456 -3.3645 42 1 4.6296 4.3703 -1.5328 43 1 4.5363 2.6219 -1.8511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710016335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:17 Heat of formation + Delta-G solvation = -6.584488 kcal Electronic energy + Delta-G solvation = -20284.532800 eV Core-core repulsion = 17556.632971 eV Total energy + Delta-G solvation = -2727.899829 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.84182 -36.81702 -34.05478 -31.97794 -31.29761 -29.81299 -29.00281 -25.99088 -25.00480 -23.72145 -22.93324 -21.49762 -20.64733 -18.92539 -17.92667 -16.41988 -15.87570 -15.12565 -14.96479 -14.47211 -14.07472 -13.96741 -13.53144 -13.09123 -13.01939 -12.49302 -12.40055 -12.12535 -11.89370 -11.69132 -11.50402 -11.06716 -11.02409 -10.86980 -10.65764 -10.56211 -10.38491 -10.01494 -9.99628 -9.89814 -9.81031 -9.54840 -9.23209 -8.76120 -8.38333 -8.34393 -7.02896 -5.96783 -3.99399 3.31903 3.38630 3.41633 4.28519 4.44167 4.89459 4.97324 5.02000 5.17490 5.25347 5.34077 5.51216 5.55170 5.65675 5.76131 5.84985 5.92921 5.95828 6.01517 6.10779 6.25139 6.30633 6.45968 6.51733 6.54595 6.58104 6.67828 6.73290 6.81914 6.86364 6.89317 7.12582 7.21401 7.35928 7.45086 7.51183 7.71668 7.81446 7.89890 8.23479 8.42763 8.66640 9.06766 9.64214 11.09778 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026685 B = 0.006612 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.013334 B = 4233.975832 C = 4648.527981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.109 4.109 3 C 0.213 3.787 4 H -0.004 1.004 5 C -0.494 4.494 6 H 0.060 0.940 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.521 5.521 14 C 0.045 3.955 15 C -0.109 4.109 16 C -0.077 4.077 17 C 0.066 3.934 18 C -0.103 4.103 19 C -0.116 4.116 20 C 0.059 3.941 21 N -0.688 5.688 22 C 0.074 3.926 23 H 0.013 0.987 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.012 0.988 27 H 0.088 0.912 28 H 0.259 0.741 29 H 0.034 0.966 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.025 0.975 40 H 0.067 0.933 41 H 0.339 0.661 42 H 0.028 0.972 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 6.416 -11.669 13.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.147 4.147 3 C 0.107 3.893 4 H 0.013 0.987 5 C -0.533 4.533 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.245 5.245 14 C -0.083 4.083 15 C -0.148 4.148 16 C -0.079 4.079 17 C -0.063 4.063 18 C -0.141 4.141 19 C -0.154 4.154 20 C -0.071 4.071 21 N -0.318 5.318 22 C -0.055 4.055 23 H 0.032 0.968 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.031 0.969 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.156 0.844 42 H 0.047 0.953 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.099 5.965 -11.883 13.460 hybrid contribution 1.100 0.978 1.629 2.196 sum 3.198 6.943 -10.254 12.789 Atomic orbital electron populations 1.21450 0.97344 0.97167 1.01708 1.21508 0.95250 0.98211 0.99726 1.19434 0.92792 0.91176 0.85908 0.98696 1.21076 1.30735 1.11758 0.89746 0.92197 1.24892 0.95324 0.95132 0.98774 1.69886 1.37775 1.23325 1.22255 0.86616 0.78772 0.80128 0.82606 1.20694 1.21458 1.20037 1.63703 1.57394 1.00753 1.02691 1.22962 0.97553 0.96309 0.91492 1.22626 1.00174 0.94695 0.97259 1.21331 0.94207 0.95270 0.97049 1.22591 0.97009 0.91883 0.94808 1.21449 0.99691 0.96596 0.96385 1.21605 0.94380 1.01070 0.98295 1.21885 0.97162 0.89549 0.98488 1.60319 1.13042 1.29195 1.29270 1.21807 0.93356 1.01059 0.89257 0.96796 0.92517 0.93793 0.96947 0.89399 0.93113 0.94727 0.91845 0.92014 0.90617 0.92068 0.91991 0.91638 0.92580 0.92199 0.91160 0.95651 0.91420 0.84420 0.95334 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.49 37.16 0.35 -2.36 16 2 C -0.11 -2.64 5.29 -26.73 -0.14 -2.78 16 3 C 0.21 5.29 1.38 -68.86 -0.10 5.20 16 4 H 0.00 -0.12 8.06 -51.93 -0.42 -0.54 16 5 C -0.49 -13.26 6.30 -34.44 -0.22 -13.48 16 6 H 0.06 1.63 7.35 -52.49 -0.39 1.25 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -25.27 11.34 55.43 0.63 -24.64 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.52 -11.11 4.32 -224.85 -0.97 -12.08 16 14 C 0.05 0.84 5.08 -2.21 -0.01 0.83 16 15 C -0.11 -1.72 5.08 -24.88 -0.13 -1.85 16 16 C -0.08 -1.21 0.55 -154.12 -0.09 -1.30 16 17 C 0.07 1.28 5.16 -3.10 -0.02 1.27 16 18 C -0.10 -1.39 4.62 -26.93 -0.12 -1.51 16 19 C -0.12 -1.33 5.90 -26.57 -0.16 -1.48 16 20 C 0.06 0.66 6.52 -3.83 -0.02 0.64 16 21 N -0.69 -8.80 6.20 -114.15 -0.71 -9.51 16 22 C 0.07 1.14 5.11 -4.17 -0.02 1.12 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.06 1.39 7.21 -51.93 -0.37 1.02 16 25 H 0.04 0.96 7.62 -51.93 -0.40 0.56 16 26 H 0.01 0.27 7.09 -51.93 -0.37 -0.10 16 27 H 0.09 2.37 6.12 -51.93 -0.32 2.05 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.03 0.68 7.23 -51.93 -0.38 0.31 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.94 7.96 -51.92 -0.41 0.53 16 32 H 0.08 1.16 7.48 -51.93 -0.39 0.77 16 33 H 0.06 1.18 7.80 -51.93 -0.41 0.78 16 34 H 0.06 1.35 6.68 -51.93 -0.35 1.00 16 35 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.84 7.56 -51.93 -0.39 0.45 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.34 3.78 8.90 -39.29 -0.35 3.43 16 42 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 1.32 7.43 -51.93 -0.39 0.94 16 LS Contribution 316.37 15.07 4.77 4.77 Total: -1.00 -27.56 316.37 -9.90 -37.46 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.83 Total: 1.89 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -0.76 Total: -14.18 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -1.05 Total: -46.23 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.56 -9.90 -37.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710016335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.872 kcal (2) G-P(sol) polarization free energy of solvation -27.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds