Wall clock time and date at job start Mon Mar 30 2020 04:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47025 * 2 1 4 4 H 1.09002 * 109.47472 * 178.06476 * 3 2 1 5 5 C 1.50698 * 109.47237 * 58.05907 * 3 2 1 6 6 H 1.08000 * 120.00360 * 239.99937 * 5 3 2 7 7 C 1.37879 * 119.99719 * 60.00273 * 5 3 2 8 8 N 1.31517 * 120.00068 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00128 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47388 * 90.00030 * 9 7 5 11 11 H 1.48503 * 109.47137 * 210.00213 * 9 7 5 12 12 H 1.48500 * 109.46959 * 329.99901 * 9 7 5 13 13 N 1.46907 * 109.46833 * 298.06129 * 3 2 1 14 14 C 1.47894 * 111.00223 * 298.91449 * 13 3 2 15 15 C 1.55022 * 104.86529 * 213.77062 * 14 13 3 16 16 C 1.54494 * 101.59873 * 36.42116 * 15 14 13 17 17 C 1.47609 * 110.99751 * 178.10193 * 13 3 2 18 18 C 1.52335 * 110.18296 * 206.52077 * 16 15 14 19 19 C 1.53264 * 109.22309 * 293.46910 * 18 16 15 20 20 C 1.53046 * 109.17480 * 303.49247 * 19 18 16 21 21 N 1.46853 * 109.65526 * 59.75112 * 20 19 18 22 22 C 1.46986 * 111.12523 * 297.72102 * 21 20 19 23 23 H 1.09001 * 109.46732 * 178.73508 * 1 2 3 24 24 H 1.08999 * 109.47297 * 298.73788 * 1 2 3 25 25 H 1.09000 * 109.47083 * 58.73932 * 1 2 3 26 26 H 1.08997 * 109.47062 * 240.00093 * 2 1 3 27 27 H 1.08996 * 109.47148 * 119.99975 * 2 1 3 28 28 H 0.96998 * 120.00415 * 180.02562 * 8 7 5 29 29 H 1.08997 * 110.36139 * 332.61131 * 14 13 3 30 30 H 1.08998 * 110.36249 * 94.91844 * 14 13 3 31 31 H 1.09008 * 111.00155 * 278.34300 * 15 14 13 32 32 H 1.08999 * 111.03850 * 154.51363 * 15 14 13 33 33 H 1.09004 * 109.91362 * 243.05208 * 17 13 3 34 34 H 1.09000 * 109.91821 * 4.33491 * 17 13 3 35 35 H 1.09002 * 109.51164 * 53.39010 * 18 16 15 36 36 H 1.08995 * 109.51760 * 173.54515 * 18 16 15 37 37 H 1.08998 * 109.52147 * 183.58389 * 19 18 16 38 38 H 1.09000 * 109.56926 * 63.42974 * 19 18 16 39 39 H 1.09006 * 109.43807 * 299.70056 * 20 19 18 40 40 H 1.09004 * 109.41248 * 179.79424 * 20 19 18 41 41 H 1.00901 * 111.00128 * 173.67067 * 21 20 19 42 42 H 1.08998 * 109.44269 * 300.44493 * 22 21 20 43 43 H 1.08999 * 109.42207 * 180.52969 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4428 0.0347 5 6 1.4988 2.1667 1.2057 6 1 0.8815 3.0435 1.0769 7 6 1.7917 1.7099 2.4732 8 7 2.5439 0.6425 2.6300 9 14 1.1215 2.6078 3.9677 10 1 -0.1992 2.0378 4.3368 11 1 2.0641 2.4495 5.1043 12 1 0.9668 4.0503 3.6503 13 7 1.5889 2.1213 -1.2223 14 6 2.1232 1.4522 -2.4281 15 6 2.3563 2.5966 -3.4475 16 6 2.8326 3.7414 -2.5259 17 6 2.0249 3.5315 -1.2358 18 6 2.5056 5.0910 -3.1521 19 6 3.3408 5.2727 -4.4243 20 6 4.8243 5.1303 -4.0762 21 7 5.0725 3.8000 -3.5060 22 6 4.3250 3.6123 -2.2544 23 1 -0.3633 -1.0274 -0.0227 24 1 -0.3634 0.4941 0.9011 25 1 -0.3633 0.5333 -0.8785 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.7497 0.3208 3.5216 29 1 3.0637 0.9514 -2.1987 30 1 1.3979 0.7384 -2.8186 31 1 1.4288 2.8634 -3.9544 32 1 3.1291 2.3277 -4.1677 33 1 1.1555 4.1890 -1.2308 34 1 2.6522 3.7345 -0.3678 35 1 1.4457 5.1282 -3.4040 36 1 2.7407 5.8869 -2.4455 37 1 3.1580 6.2628 -4.8417 38 1 3.0635 4.5126 -5.1547 39 1 5.1013 5.8940 -3.3494 40 1 5.4219 5.2553 -4.9793 41 1 6.0595 3.6456 -3.3645 42 1 4.6296 4.3703 -1.5328 43 1 4.5363 2.6219 -1.8511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710016335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:16 Heat of formation + Delta-G solvation = -24.190417 kcal Electronic energy + Delta-G solvation = -20285.296251 eV Core-core repulsion = 17556.632971 eV Total energy + Delta-G solvation = -2728.663279 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.19705 -38.30589 -35.75184 -33.57775 -32.74288 -31.32540 -30.53793 -27.89706 -26.56488 -24.81725 -24.70257 -22.92154 -22.01914 -20.74985 -19.21217 -18.03542 -17.48528 -16.92582 -16.47794 -15.84356 -15.44877 -15.25750 -15.13192 -14.60551 -14.39211 -14.13966 -13.73253 -13.61039 -13.52591 -13.35679 -12.97056 -12.84818 -12.60240 -12.44770 -12.33556 -12.10027 -11.84870 -11.68241 -11.49120 -11.43877 -11.28912 -11.11766 -10.95492 -10.77476 -10.47915 -9.40295 -8.81410 -8.07885 -6.16968 1.39680 1.41135 1.50155 2.42664 3.19986 3.22269 3.51211 3.71642 3.82775 3.90277 4.21215 4.29852 4.39920 4.47352 4.50973 4.59464 4.66989 4.68094 4.76889 4.82445 4.86169 4.92923 4.95917 4.99471 5.08138 5.17128 5.21231 5.22201 5.28738 5.32565 5.44343 5.51113 5.54024 5.55557 5.75168 5.77592 5.89122 6.04416 6.31446 6.46403 6.48717 6.77462 6.96902 7.50480 8.97854 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026685 B = 0.006612 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.013334 B = 4233.975832 C = 4648.527981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.105 4.105 3 C 0.224 3.776 4 H -0.046 1.046 5 C -0.502 4.502 6 H 0.052 0.948 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.526 5.526 14 C 0.043 3.957 15 C -0.093 4.093 16 C -0.070 4.070 17 C 0.066 3.934 18 C -0.101 4.101 19 C -0.111 4.111 20 C 0.056 3.944 21 N -0.686 5.686 22 C 0.082 3.918 23 H 0.036 0.964 24 H 0.033 0.967 25 H 0.052 0.948 26 H 0.025 0.975 27 H 0.058 0.942 28 H 0.259 0.741 29 H 0.018 0.982 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.025 0.975 40 H 0.092 0.908 41 H 0.348 0.652 42 H 0.018 0.982 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.506 7.649 -13.493 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.143 4.143 3 C 0.116 3.884 4 H -0.028 1.028 5 C -0.540 4.540 6 H 0.070 0.930 7 C -0.184 4.184 8 N -0.560 5.560 9 Si 0.775 3.225 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.195 1.195 13 N -0.250 5.250 14 C -0.085 4.085 15 C -0.131 4.131 16 C -0.072 4.072 17 C -0.063 4.063 18 C -0.139 4.139 19 C -0.148 4.148 20 C -0.073 4.073 21 N -0.318 5.318 22 C -0.048 4.048 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.110 0.890 41 H 0.167 0.833 42 H 0.036 0.964 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.570 7.208 -13.726 15.583 hybrid contribution 1.302 0.589 2.173 2.601 sum 2.871 7.798 -11.553 14.231 Atomic orbital electron populations 1.21301 0.95779 0.98452 1.00838 1.21393 0.96505 0.97578 0.98864 1.19168 0.90180 0.91869 0.87143 1.02831 1.21246 1.30416 1.11536 0.90818 0.93018 1.25594 0.95614 0.95830 1.01356 1.70019 1.38764 1.24499 1.22716 0.85689 0.78213 0.79182 0.79386 1.20160 1.21148 1.19517 1.63647 1.57462 1.01652 1.02274 1.23014 0.96807 0.97406 0.91250 1.22536 1.01126 0.93007 0.96432 1.21243 0.93674 0.97154 0.95103 1.22566 0.97080 0.90818 0.95793 1.21435 1.00570 0.94561 0.97327 1.21602 0.93771 1.02539 0.96928 1.22012 0.97657 0.88345 0.99285 1.60300 1.13545 1.30597 1.27342 1.21573 0.93764 0.99071 0.90368 0.94513 0.94812 0.92942 0.95673 0.92315 0.93165 0.96347 0.91143 0.90622 0.89493 0.91903 0.95195 0.91076 0.92754 0.89775 0.91081 0.95662 0.89003 0.83340 0.96377 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.79 9.49 71.98 0.68 -4.11 16 2 C -0.10 -5.20 5.29 30.60 0.16 -5.04 16 3 C 0.22 11.52 1.38 44.17 0.06 11.58 16 4 H -0.05 -2.68 8.06 -2.39 -0.02 -2.70 16 5 C -0.50 -27.70 6.30 25.60 0.16 -27.53 16 6 H 0.05 2.88 7.35 -2.91 -0.02 2.86 16 7 C 0.01 0.80 5.30 84.65 0.45 1.25 16 8 N -0.92 -53.60 11.34 21.45 0.24 -53.35 16 9 Si 0.95 44.33 29.54 68.60 2.03 46.36 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.53 -22.76 4.32 -865.28 -3.74 -26.50 16 14 C 0.04 1.60 5.08 86.80 0.44 2.04 16 15 C -0.09 -2.77 5.08 31.79 0.16 -2.61 16 16 C -0.07 -2.16 0.55 -51.93 -0.03 -2.19 16 17 C 0.07 2.61 5.16 86.39 0.45 3.06 16 18 C -0.10 -2.48 4.62 30.46 0.14 -2.34 16 19 C -0.11 -2.14 5.90 30.70 0.18 -1.96 16 20 C 0.06 1.09 6.52 86.33 0.56 1.65 16 21 N -0.69 -16.40 6.20 -515.07 -3.19 -19.60 16 22 C 0.08 2.53 5.11 86.03 0.44 2.97 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.03 1.64 7.21 -2.39 -0.02 1.63 16 25 H 0.05 2.24 7.62 -2.39 -0.02 2.22 16 26 H 0.02 1.14 7.09 -2.39 -0.02 1.13 16 27 H 0.06 3.27 6.12 -2.39 -0.01 3.25 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.02 0.74 7.23 -2.39 -0.02 0.72 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.08 2.08 7.96 -2.38 -0.02 2.06 16 32 H 0.09 2.44 7.48 -2.39 -0.02 2.43 16 33 H 0.06 2.43 7.80 -2.38 -0.02 2.41 16 34 H 0.03 1.36 6.68 -2.39 -0.02 1.34 16 35 H 0.07 1.69 8.06 -2.39 -0.02 1.67 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.41 7.56 -2.39 -0.02 1.39 16 39 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.35 7.27 8.90 -89.69 -0.80 6.47 16 42 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.05 1.69 7.43 -2.39 -0.02 1.68 16 Total: -1.00 -60.46 316.37 -0.64 -61.10 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.16 Total: 15.23 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 3.86 Total: -23.23 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -6.69 Total: -99.45 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -60.46 -0.64 -61.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710016335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.905 kcal (2) G-P(sol) polarization free energy of solvation -60.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds