Wall clock time and date at job start Mon Mar 30 2020 04:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47252 * 2 1 4 4 H 1.08992 * 109.47002 * 55.00288 * 3 2 1 5 5 C 1.50705 * 109.46857 * 175.00019 * 3 2 1 6 6 H 1.07992 * 119.99717 * 120.00682 * 5 3 2 7 7 C 1.37883 * 119.99941 * 299.99535 * 5 3 2 8 8 N 1.31512 * 119.99784 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99703 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47451 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47162 * 120.00456 * 9 7 5 12 12 H 1.48503 * 109.46847 * 240.00230 * 9 7 5 13 13 N 1.46898 * 109.47096 * 294.99806 * 3 2 1 14 14 C 1.48600 * 111.00207 * 295.12586 * 13 3 2 15 15 C 1.54490 * 104.61006 * 201.19114 * 14 13 3 16 16 C 1.53827 * 104.89073 * 23.79721 * 15 14 13 17 17 C 1.48664 * 111.00008 * 179.61586 * 13 3 2 18 18 C 1.52584 * 110.15448 * 118.68484 * 16 15 14 19 19 C 1.53218 * 109.23445 * 65.61297 * 18 16 15 20 20 C 1.53170 * 109.14983 * 56.81567 * 19 18 16 21 21 N 1.46838 * 109.64551 * 300.43262 * 20 19 18 22 22 C 1.46944 * 111.16329 * 62.13256 * 21 20 19 23 23 H 1.08992 * 109.47341 * 300.00063 * 1 2 3 24 24 H 1.09000 * 109.47134 * 60.00021 * 1 2 3 25 25 H 1.09005 * 109.47378 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47212 * 239.99688 * 2 1 3 27 27 H 1.09000 * 109.47134 * 119.99979 * 2 1 3 28 28 H 0.97002 * 119.99861 * 179.97438 * 8 7 5 29 29 H 1.09001 * 110.40796 * 82.40569 * 14 13 3 30 30 H 1.09005 * 110.50869 * 320.02591 * 14 13 3 31 31 H 1.08996 * 110.35749 * 264.94851 * 15 14 13 32 32 H 1.09000 * 110.44325 * 142.69577 * 15 14 13 33 33 H 1.09003 * 110.42830 * 39.89550 * 17 13 3 34 34 H 1.09008 * 110.42882 * 277.40882 * 17 13 3 35 35 H 1.09002 * 109.51863 * 185.55627 * 18 16 15 36 36 H 1.09001 * 109.52119 * 305.67076 * 18 16 15 37 37 H 1.08997 * 109.51680 * 176.79026 * 19 18 16 38 38 H 1.08996 * 109.51915 * 296.94596 * 19 18 16 39 39 H 1.09001 * 109.43051 * 180.37694 * 20 19 18 40 40 H 1.09004 * 109.43206 * 60.48632 * 20 19 18 41 41 H 1.00899 * 111.00323 * 186.20243 * 21 20 19 42 42 H 1.08995 * 109.45683 * 179.12535 * 22 21 20 43 43 H 1.09002 * 109.43030 * 59.17981 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6522 7 6 4.1433 0.8783 1.2281 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8811 1.3818 10 1 6.5987 1.5471 0.1948 11 1 6.3990 1.6165 2.6102 12 1 6.4969 -0.5177 1.4630 13 7 1.6514 2.0993 -1.2552 14 6 2.3204 1.4619 -2.4190 15 6 2.2749 2.5344 -3.5301 16 6 2.1481 3.8729 -2.7826 17 6 2.1231 3.5087 -1.2873 18 6 3.3512 4.7608 -3.0866 19 6 3.3342 5.1432 -4.5702 20 6 2.0053 5.8314 -4.8965 21 7 0.8921 4.9201 -4.6025 22 6 0.8523 4.5745 -3.1749 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8292 -0.0618 2.9496 29 1 1.7758 0.5701 -2.7290 30 1 3.3528 1.2105 -2.1756 31 1 1.4099 2.3766 -4.1742 32 1 3.1929 2.5135 -4.1173 33 1 3.1230 3.5851 -0.8602 34 1 1.4285 4.1547 -0.7500 35 1 3.3010 5.6632 -2.4773 36 1 4.2698 4.2194 -2.8606 37 1 4.1594 5.8236 -4.7804 38 1 3.4379 4.2451 -5.1790 39 1 1.9856 6.0996 -5.9529 40 1 1.9057 6.7329 -4.2919 41 1 0.0133 5.3137 -4.9039 42 1 0.0085 3.9111 -2.9853 43 1 0.7389 5.4839 -2.5847 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710016341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:25 Heat of formation + Delta-G solvation = -6.961266 kcal Electronic energy + Delta-G solvation = -20249.150425 eV Core-core repulsion = 17521.234258 eV Total energy + Delta-G solvation = -2727.916167 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.70517 -36.87949 -33.90881 -31.89621 -31.43014 -30.07616 -28.79228 -26.36317 -24.53762 -23.64051 -22.75158 -21.53188 -20.64048 -19.03053 -17.80012 -16.35740 -16.27728 -15.23467 -14.64269 -14.52349 -14.03825 -13.94863 -13.23792 -12.97894 -12.97087 -12.72101 -12.44262 -12.26035 -11.98652 -11.49463 -11.21625 -11.03797 -10.99253 -10.82345 -10.68133 -10.50898 -10.28833 -10.11564 -9.94183 -9.84290 -9.77438 -9.57660 -9.34118 -9.02395 -8.34889 -8.30740 -7.13819 -5.97244 -4.09657 3.25694 3.34585 3.37365 4.31415 4.40318 4.94011 5.01901 5.11336 5.25944 5.28194 5.45064 5.47332 5.58073 5.71894 5.88044 5.91050 5.96466 6.03876 6.16607 6.20303 6.33749 6.38343 6.41204 6.51367 6.56728 6.61656 6.71595 6.76288 6.86892 6.89200 7.05498 7.13501 7.16726 7.23163 7.36298 7.48497 7.64244 7.77667 8.02351 8.19121 8.27930 8.48126 9.01451 9.56851 11.02174 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.007136 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.532421 B = 3923.014948 C = 4718.496857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C 0.202 3.798 4 H 0.037 0.963 5 C -0.540 4.540 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.507 5.507 14 C 0.034 3.966 15 C -0.101 4.101 16 C -0.057 4.057 17 C 0.046 3.954 18 C -0.109 4.109 19 C -0.117 4.117 20 C 0.060 3.940 21 N -0.688 5.688 22 C 0.078 3.922 23 H 0.038 0.962 24 H 0.047 0.953 25 H 0.024 0.976 26 H 0.031 0.969 27 H 0.091 0.909 28 H 0.260 0.740 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.024 0.976 41 H 0.337 0.663 42 H 0.081 0.919 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.009 7.922 -10.916 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C 0.095 3.905 4 H 0.055 0.945 5 C -0.579 4.579 6 H 0.077 0.923 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.230 5.230 14 C -0.095 4.095 15 C -0.139 4.139 16 C -0.058 4.058 17 C -0.083 4.083 18 C -0.147 4.147 19 C -0.155 4.155 20 C -0.069 4.069 21 N -0.319 5.319 22 C -0.050 4.050 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.154 0.846 42 H 0.099 0.901 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -3.237 7.219 -10.923 13.487 hybrid contribution 1.675 0.840 0.756 2.021 sum -1.562 8.059 -10.167 13.068 Atomic orbital electron populations 1.21708 0.98922 0.98355 1.00544 1.21547 0.92192 0.99147 1.01861 1.19376 0.93084 0.91341 0.86717 0.94550 1.21760 0.92891 1.37864 1.05338 0.92286 1.24912 0.97688 0.95128 0.95745 1.69890 1.34623 1.38386 1.09442 0.86657 0.86393 0.77726 0.77944 1.19939 1.21079 1.21012 1.65730 1.52129 1.00836 1.04323 1.23037 0.99004 0.96415 0.91020 1.22257 1.00962 0.93450 0.97254 1.20937 0.93434 0.95294 0.96125 1.22958 1.00063 0.92278 0.93033 1.21591 0.98420 0.99218 0.95438 1.21643 0.95863 1.00714 0.97261 1.21886 0.92101 0.93198 0.99736 1.60269 1.06243 1.46453 1.18935 1.21878 0.98638 0.98035 0.86494 0.94289 0.93368 0.95672 0.95049 0.89107 0.93006 0.92138 0.92543 0.91350 0.92798 0.92243 0.92259 0.92673 0.91677 0.92234 0.91066 0.91506 0.95779 0.84612 0.90093 0.95942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.80 37.16 0.36 -2.50 16 2 C -0.11 -2.61 5.18 -26.73 -0.14 -2.75 16 3 C 0.20 4.97 1.83 -68.86 -0.13 4.85 16 4 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 5 C -0.54 -14.26 6.50 -34.44 -0.22 -14.49 16 6 H 0.06 1.57 5.70 -52.49 -0.30 1.27 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.89 11.29 55.43 0.63 -24.26 16 9 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.51 -10.70 4.85 -223.50 -1.08 -11.79 16 14 C 0.03 0.67 5.32 -2.10 -0.01 0.66 16 15 C -0.10 -1.69 5.58 -25.52 -0.14 -1.83 16 16 C -0.06 -0.91 0.68 -154.07 -0.11 -1.01 16 17 C 0.05 0.89 5.38 -2.37 -0.01 0.87 16 18 C -0.11 -1.58 4.47 -26.83 -0.12 -1.70 16 19 C -0.12 -1.43 5.88 -26.53 -0.16 -1.59 16 20 C 0.06 0.68 6.53 -3.77 -0.02 0.65 16 21 N -0.69 -8.43 6.45 -113.98 -0.74 -9.17 16 22 C 0.08 1.11 4.93 -4.06 -0.02 1.09 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.97 7.75 -51.93 -0.40 0.56 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.03 0.74 6.85 -51.93 -0.36 0.38 16 27 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.06 1.19 7.59 -51.93 -0.39 0.80 16 30 H 0.06 1.25 5.88 -51.93 -0.31 0.95 16 31 H 0.07 1.13 7.55 -51.93 -0.39 0.74 16 32 H 0.05 0.87 6.73 -51.93 -0.35 0.52 16 33 H 0.06 1.29 5.97 -51.93 -0.31 0.98 16 34 H 0.06 1.12 7.84 -51.92 -0.41 0.72 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.92 6.91 -51.93 -0.36 0.56 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.34 3.44 8.90 -39.29 -0.35 3.09 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 314.18 15.07 4.73 4.73 Total: -1.00 -27.09 314.18 -9.89 -36.98 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -7.60 Total: 3.47 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -0.81 Total: -16.02 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -1.19 Total: -45.22 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.09 -9.89 -36.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710016341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.016 kcal (2) G-P(sol) polarization free energy of solvation -27.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds