Wall clock time and date at job start Mon Mar 30 2020 03:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46848 * 111.00287 * 2 1 4 4 C 1.53037 * 109.52178 * 185.83876 * 3 2 1 5 5 C 1.53116 * 109.28100 * 300.81726 * 4 3 2 6 6 C 1.52999 * 109.52344 * 297.69279 * 5 4 3 7 7 N 1.46896 * 109.52472 * 177.55801 * 5 4 3 8 8 C 1.46901 * 110.99848 * 180.02562 * 7 5 4 9 9 C 1.53009 * 109.47050 * 184.81104 * 8 7 5 10 10 C 1.50696 * 115.54760 * 294.80859 * 9 8 7 11 11 H 1.08005 * 119.99978 * 95.12218 * 10 9 8 12 12 C 1.37879 * 120.00213 * 275.11998 * 10 9 8 13 13 N 1.31515 * 119.99501 * 5.25724 * 12 10 9 14 14 Si 1.86803 * 119.99910 * 185.25386 * 12 10 9 15 15 H 1.48503 * 109.46613 * 180.02562 * 14 12 10 16 16 H 1.48491 * 109.47272 * 300.00212 * 14 12 10 17 17 H 1.48500 * 109.46903 * 60.00559 * 14 12 10 18 18 C 1.52997 * 117.49668 * 80.47704 * 9 8 7 19 19 C 1.53002 * 117.49932 * 149.13771 * 9 8 7 20 20 C 1.53121 * 109.16021 * 57.65459 * 5 4 3 21 21 C 1.46855 * 110.99747 * 124.20939 * 2 1 3 22 22 H 1.09007 * 109.47017 * 59.99942 * 1 2 3 23 23 H 1.08995 * 109.47639 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47054 * 300.00480 * 1 2 3 25 25 H 1.08994 * 109.46294 * 65.81981 * 3 2 1 26 26 H 1.09002 * 109.45092 * 305.85014 * 3 2 1 27 27 H 1.09001 * 109.49915 * 180.87860 * 4 3 2 28 28 H 1.08996 * 109.50483 * 60.76043 * 4 3 2 29 29 H 1.08999 * 109.46939 * 299.86671 * 6 5 4 30 30 H 1.08994 * 109.47621 * 59.86690 * 6 5 4 31 31 H 1.09005 * 109.46971 * 179.87237 * 6 5 4 32 32 H 1.00896 * 111.00207 * 303.95965 * 7 5 4 33 33 H 1.09002 * 109.47275 * 64.81396 * 8 7 5 34 34 H 1.08999 * 109.47508 * 304.81134 * 8 7 5 35 35 H 0.96999 * 119.99430 * 174.99494 * 13 12 10 36 36 H 1.08996 * 117.49989 * 215.00149 * 18 9 8 37 37 H 1.09000 * 117.50049 * 0.02562 * 18 9 8 38 38 H 1.09003 * 117.49565 * 359.97438 * 19 9 8 39 39 H 1.08994 * 117.49541 * 144.99488 * 19 9 8 40 40 H 1.09007 * 109.50381 * 62.28767 * 20 5 4 41 41 H 1.08995 * 109.50660 * 182.40463 * 20 5 4 42 42 H 1.08995 * 109.45911 * 294.17560 * 21 2 1 43 43 H 1.08996 * 109.46325 * 54.15655 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3340 -0.1467 5 6 4.1188 0.5369 1.0144 6 6 3.7971 1.2374 2.3360 7 7 5.5756 0.4484 0.8475 8 6 6.1861 -0.3121 1.9460 9 6 7.7092 -0.2810 1.8031 10 6 8.2620 -0.9757 0.5855 11 1 8.4762 -0.4092 -0.3088 12 6 8.4944 -2.3345 0.6130 13 7 8.1381 -3.0413 1.6632 14 14 9.3153 -3.1713 -0.8415 15 1 9.4495 -4.6242 -0.5655 16 1 8.4874 -2.9735 -2.0583 17 1 10.6609 -2.5815 -1.0571 18 6 8.4395 0.9701 2.2952 19 6 8.5405 -0.3364 3.0864 20 6 3.5181 -0.8715 1.0210 21 6 1.9952 -0.7708 1.1338 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.7325 1.8608 0.9375 26 1 1.5634 1.9255 -0.8331 27 1 3.9100 2.3511 -0.1310 28 1 3.7814 0.8566 -1.0905 29 1 4.2231 2.2407 2.3285 30 1 2.7161 1.3026 2.4590 31 1 4.2232 0.6680 3.1621 32 1 5.8133 0.0457 -0.0466 33 1 5.8389 -1.3447 1.9101 34 1 5.9015 0.1340 2.8990 35 1 8.2348 -4.0065 1.6537 36 1 9.3198 1.2908 1.7382 37 1 7.8350 1.7709 2.7211 38 1 8.0023 -0.3945 4.0325 39 1 9.4871 -0.8753 3.0499 40 1 3.7813 -1.3838 0.0954 41 1 3.9098 -1.4303 1.8708 42 1 1.7324 -0.2708 2.0660 43 1 1.5635 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714859957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:16 Heat of formation + Delta-G solvation = 25.105190 kcal Electronic energy + Delta-G solvation = -19852.151723 eV Core-core repulsion = 17125.626062 eV Total energy + Delta-G solvation = -2726.525661 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.60555 -36.84120 -35.16321 -31.87492 -31.08452 -30.53562 -27.87517 -26.01443 -25.32892 -24.02732 -22.85470 -21.32528 -20.85408 -18.97238 -18.08042 -16.14995 -15.79725 -15.04098 -14.95020 -14.58497 -14.24497 -14.21859 -13.95882 -13.59757 -12.72017 -12.68993 -12.34547 -12.17800 -11.94503 -11.85163 -11.47705 -11.41080 -11.04431 -10.90800 -10.84649 -10.83157 -10.69852 -10.38913 -10.25041 -10.06730 -9.90968 -9.31830 -8.69442 -8.36627 -8.26109 -7.98438 -7.35254 -5.97793 -4.03723 3.32730 3.37733 3.40798 3.98471 4.43725 4.76213 4.96714 5.08496 5.21888 5.28841 5.31381 5.41388 5.41777 5.55578 5.60587 5.64645 5.75033 5.77231 5.82592 5.91450 6.09399 6.15577 6.18805 6.27849 6.32655 6.44727 6.55088 6.58922 6.65919 6.71620 6.92029 6.97200 7.00962 7.12261 7.15186 7.23253 7.59226 7.63799 7.92699 8.11617 8.39043 8.55781 8.99321 9.61732 11.10134 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024152 B = 0.006167 C = 0.005482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.051038 B = 4539.024016 C = 5106.447073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.543 5.543 3 C 0.057 3.943 4 C -0.102 4.102 5 C 0.113 3.887 6 C -0.139 4.139 7 N -0.670 5.670 8 C 0.104 3.896 9 C 0.051 3.949 10 C -0.491 4.491 11 H 0.059 0.941 12 C 0.071 3.929 13 N -0.881 5.881 14 Si 0.886 3.114 15 H -0.289 1.289 16 H -0.277 1.277 17 H -0.277 1.277 18 C -0.201 4.201 19 C -0.163 4.163 20 C -0.144 4.144 21 C 0.060 3.940 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.021 0.979 25 H 0.034 0.966 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.347 0.653 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.259 0.741 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.033 0.967 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.974 6.079 -0.653 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.268 5.268 3 C -0.071 4.071 4 C -0.140 4.140 5 C 0.021 3.979 6 C -0.196 4.196 7 N -0.300 5.300 8 C -0.025 4.025 9 C 0.051 3.949 10 C -0.529 4.529 11 H 0.077 0.923 12 C -0.132 4.132 13 N -0.518 5.518 14 Si 0.714 3.286 15 H -0.215 1.215 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.238 4.238 19 C -0.201 4.201 20 C -0.183 4.183 21 C -0.069 4.069 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.166 0.834 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.614 6.277 -0.684 14.106 hybrid contribution -0.108 -1.212 -0.162 1.228 sum -12.722 5.065 -0.846 13.719 Atomic orbital electron populations 1.22330 0.87905 1.01768 1.00237 1.61930 1.06949 1.14056 1.43866 1.22133 0.96080 0.88800 1.00076 1.21573 0.92912 1.00782 0.98719 1.20882 0.89420 0.92913 0.94700 1.21950 0.99704 1.00988 0.97005 1.60624 1.05301 1.57139 1.06950 1.21483 0.94954 0.94646 0.91391 1.18756 0.88698 0.93946 0.93549 1.20430 1.42529 0.92367 0.97608 0.92330 1.24984 0.95222 0.97543 0.95470 1.69984 1.47305 1.06004 1.28508 0.86757 0.80385 0.78316 0.83113 1.21466 1.20281 1.20275 1.22859 1.03202 0.91528 1.06242 1.22519 1.02721 0.99554 0.95284 1.22361 0.93764 0.99225 1.02993 1.22102 0.96242 0.97498 0.91012 0.91604 0.91626 0.96067 0.94791 0.91176 0.90938 0.91263 0.92249 0.93381 0.92517 0.83381 0.94496 0.94229 0.93142 0.91031 0.91795 0.92355 0.90397 0.91169 0.91021 0.94883 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.59 60.06 0.58 0.84 16 2 N -0.54 -6.99 4.91 -242.96 -1.19 -8.18 16 3 C 0.06 0.70 5.22 -3.83 -0.02 0.68 16 4 C -0.10 -1.43 5.14 -26.65 -0.14 -1.57 16 5 C 0.11 1.80 0.71 -131.48 -0.09 1.70 16 6 C -0.14 -2.07 7.67 37.16 0.29 -1.79 16 7 N -0.67 -12.95 6.07 -99.84 -0.61 -13.55 16 8 C 0.10 2.28 4.74 -3.82 -0.02 2.26 16 9 C 0.05 1.25 1.57 -155.66 -0.24 1.01 16 10 C -0.49 -13.15 8.32 -34.44 -0.29 -13.44 16 11 H 0.06 1.58 7.82 -52.48 -0.41 1.17 16 12 C 0.07 1.91 5.40 -17.82 -0.10 1.82 16 13 N -0.88 -24.76 12.90 55.43 0.72 -24.04 16 14 Si 0.89 21.08 29.54 -169.99 -5.02 16.05 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C -0.20 -4.55 9.96 -26.69 -0.27 -4.81 16 19 C -0.16 -3.91 9.41 -26.69 -0.25 -4.16 16 20 C -0.14 -2.31 4.57 -26.65 -0.12 -2.43 16 21 C 0.06 0.81 5.22 -3.83 -0.02 0.79 16 22 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 23 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 24 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.03 0.41 6.51 -51.93 -0.34 0.07 16 26 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.63 4.93 -51.93 -0.26 0.38 16 31 H 0.06 0.90 6.30 -51.93 -0.33 0.58 16 32 H 0.35 7.19 8.28 -39.29 -0.33 6.86 16 33 H 0.04 0.90 6.64 -51.93 -0.34 0.55 16 34 H 0.04 0.84 6.01 -51.93 -0.31 0.53 16 35 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 36 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.07 1.25 6.67 -51.93 -0.35 0.91 16 42 H 0.03 0.43 6.52 -51.93 -0.34 0.10 16 43 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 LS Contribution 325.97 15.07 4.91 4.91 Total: -1.00 -27.30 325.97 -9.51 -36.81 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -7.62 Total: 7.09 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -0.69 Total: -19.09 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -1.08 Total: -45.78 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.30 -9.51 -36.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714859957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.919 kcal (2) G-P(sol) polarization free energy of solvation -27.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds