Wall clock time and date at job start Mon Mar 30 2020 04:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47068 * 2 1 4 4 H 1.09000 * 109.47396 * 304.88255 * 3 2 1 5 5 C 1.50699 * 109.47008 * 184.87908 * 3 2 1 6 6 H 1.07998 * 119.99678 * 267.45289 * 5 3 2 7 7 C 1.37872 * 119.99778 * 87.18503 * 5 3 2 8 8 N 1.31522 * 120.00100 * 189.88630 * 7 5 3 9 9 Si 1.86804 * 120.00134 * 9.87849 * 7 5 3 10 10 H 1.48502 * 109.46847 * 85.03715 * 9 7 5 11 11 H 1.48500 * 109.47118 * 205.03332 * 9 7 5 12 12 H 1.48494 * 109.47119 * 325.03867 * 9 7 5 13 13 N 1.46899 * 109.46893 * 64.88098 * 3 2 1 14 14 C 1.46945 * 111.00123 * 209.48840 * 13 3 2 15 15 C 1.52985 * 109.77702 * 174.66356 * 14 13 3 16 16 C 1.53201 * 109.50675 * 58.59837 * 15 14 13 17 17 C 1.52995 * 108.89443 * 302.58815 * 16 15 14 18 18 H 1.09003 * 109.49384 * 298.48254 * 17 16 15 19 19 C 1.52895 * 110.12575 * 177.95427 * 17 16 15 20 20 N 1.46939 * 109.26150 * 180.69258 * 19 17 16 21 21 C 1.46794 * 111.44417 * 61.46534 * 20 19 17 22 22 C 1.53114 * 109.70036 * 298.75564 * 21 20 19 23 23 C 1.46711 * 111.00299 * 85.66159 * 13 3 2 24 24 H 1.09006 * 109.44847 * 66.35527 * 23 13 3 25 25 H 1.09000 * 109.46900 * 304.95146 * 1 2 3 26 26 H 1.08997 * 109.46851 * 64.95659 * 1 2 3 27 27 H 1.09001 * 109.46863 * 184.95583 * 1 2 3 28 28 H 1.09005 * 109.47120 * 240.00027 * 2 1 3 29 29 H 1.09001 * 109.46913 * 120.00326 * 2 1 3 30 30 H 0.96999 * 120.00174 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.41979 * 294.75732 * 14 13 3 32 32 H 1.08998 * 109.41930 * 54.56555 * 14 13 3 33 33 H 1.09003 * 109.46472 * 298.58524 * 15 14 13 34 34 H 1.09004 * 109.46469 * 178.61430 * 15 14 13 35 35 H 1.08999 * 109.56690 * 182.76817 * 16 15 14 36 36 H 1.09003 * 109.66642 * 62.47308 * 16 15 14 37 37 H 1.09001 * 109.50588 * 300.63388 * 19 17 16 38 38 H 1.08999 * 109.50254 * 60.71462 * 19 17 16 39 39 H 1.00904 * 111.00079 * 185.73382 * 20 19 17 40 40 H 1.08999 * 109.42908 * 58.88226 * 21 20 19 41 41 H 1.09002 * 109.42114 * 178.76747 * 21 20 19 42 42 H 1.09004 * 109.60365 * 299.09648 * 22 21 20 43 43 H 1.09005 * 109.48537 * 178.83283 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9810 -0.8430 5 6 3.5422 1.4442 -0.1208 6 1 4.1554 1.4598 0.7680 7 6 4.1336 1.4201 -1.3661 8 7 5.4298 1.2259 -1.4748 9 14 3.0938 1.6632 -2.8988 10 1 2.9317 3.1158 -3.1617 11 1 3.7641 1.0221 -4.0585 12 1 1.7591 1.0452 -2.6946 13 7 1.6489 2.1000 1.2540 14 6 1.4668 3.5447 1.0566 15 6 0.9331 4.1797 2.3420 16 6 1.9144 3.9160 3.4886 17 6 2.1082 2.4056 3.6373 18 1 1.1545 1.9391 3.8842 19 6 3.1231 2.1118 4.7425 20 7 3.3070 0.6585 4.8578 21 6 3.8336 0.0838 3.6139 22 6 2.8436 0.3298 2.4720 23 6 2.6284 1.8360 2.3139 24 1 3.5750 2.3134 2.0604 25 1 -0.3633 0.5887 0.8423 26 1 -0.3633 0.4350 -0.9310 27 1 -0.3633 -1.0238 0.0888 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.8458 1.2086 -2.3509 31 1 2.4235 3.9986 0.7983 32 1 0.7566 3.7132 0.2471 33 1 -0.0363 3.7452 2.5864 34 1 0.8232 5.2545 2.1978 35 1 1.5118 4.3253 4.4151 36 1 2.8722 4.3869 3.2673 37 1 4.0756 2.5808 4.4960 38 1 2.7559 2.5091 5.6887 39 1 3.9005 0.4302 5.6412 40 1 4.7885 0.5516 3.3742 41 1 3.9776 -0.9889 3.7428 42 1 1.8933 -0.1522 2.7017 43 1 3.2474 -0.0800 1.5462 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715006848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:41 Heat of formation + Delta-G solvation = 5.314441 kcal Electronic energy + Delta-G solvation = -20891.317226 eV Core-core repulsion = 18163.933374 eV Total energy + Delta-G solvation = -2727.383853 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.67753 -36.23538 -34.84131 -32.10716 -31.20444 -30.52291 -29.31164 -26.98834 -24.18998 -23.16619 -22.87447 -21.26957 -19.81928 -19.22682 -19.01485 -16.99187 -15.75968 -15.07164 -14.64139 -14.38086 -14.08053 -13.81347 -13.60949 -13.04033 -12.92770 -12.71985 -12.45291 -12.07680 -11.98448 -11.71956 -11.45721 -11.17072 -10.94199 -10.84999 -10.75970 -10.65868 -10.31475 -10.14219 -9.97901 -9.72843 -9.65835 -9.44497 -9.28809 -8.81673 -8.47027 -8.10688 -7.07065 -6.12989 -4.12048 3.25215 3.34649 3.38273 4.38747 4.53339 4.83977 5.18331 5.21060 5.32104 5.41511 5.58707 5.65064 5.77646 5.87975 5.91565 6.04385 6.13971 6.16754 6.19900 6.22604 6.29220 6.31077 6.37832 6.43491 6.46992 6.52018 6.59448 6.71672 6.75102 6.79412 6.88325 7.06944 7.14981 7.16587 7.28431 7.41485 7.45668 7.61955 7.69662 8.12748 8.29364 8.53369 8.92953 9.53082 10.98577 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020731 B = 0.009145 C = 0.008381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.308255 B = 3061.124198 C = 3339.957840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.180 3.820 4 H 0.031 0.969 5 C -0.548 4.548 6 H 0.089 0.911 7 C 0.079 3.921 8 N -0.895 5.895 9 Si 0.866 3.134 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.260 1.260 13 N -0.523 5.523 14 C 0.058 3.942 15 C -0.112 4.112 16 C -0.112 4.112 17 C -0.081 4.081 18 H 0.077 0.923 19 C 0.067 3.933 20 N -0.692 5.692 21 C 0.058 3.942 22 C -0.118 4.118 23 C 0.105 3.895 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.033 0.967 27 H 0.031 0.969 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.263 0.737 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.025 0.975 38 H 0.065 0.935 39 H 0.333 0.667 40 H 0.028 0.972 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.265 1.863 9.104 11.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C 0.073 3.927 4 H 0.049 0.951 5 C -0.586 4.586 6 H 0.106 0.894 7 C -0.124 4.124 8 N -0.532 5.532 9 Si 0.693 3.307 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.184 1.184 13 N -0.247 5.247 14 C -0.070 4.070 15 C -0.150 4.150 16 C -0.150 4.150 17 C -0.100 4.100 18 H 0.096 0.904 19 C -0.063 4.063 20 N -0.322 5.322 21 C -0.071 4.071 22 C -0.155 4.155 23 C -0.004 4.004 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.149 0.851 40 H 0.046 0.954 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.219 1.504 8.934 11.584 hybrid contribution 1.375 0.858 -1.280 2.065 sum -5.843 2.362 7.655 9.915 Atomic orbital electron populations 1.21754 0.98246 0.99279 1.00852 1.22161 0.93324 0.99118 1.01576 1.19672 0.94528 0.91229 0.87283 0.95113 1.21790 0.90623 1.51673 0.94485 0.89351 1.25015 0.94604 0.94037 0.98773 1.69938 1.10189 1.48823 1.24244 0.87040 0.81625 0.78729 0.83330 1.20444 1.21608 1.18446 1.62338 1.45815 1.08375 1.08156 1.21924 0.99303 0.89780 0.96016 1.21550 0.99056 0.99029 0.95355 1.21546 0.99355 0.96144 0.97953 1.21262 0.99097 0.94779 0.94903 0.90436 1.21889 0.97797 0.87969 0.98623 1.60283 1.54212 1.11808 1.05878 1.21999 0.96604 0.98650 0.89866 1.22137 0.98655 0.96418 0.98297 1.21331 0.94270 0.95355 0.89402 0.93249 0.92075 0.94779 0.95022 0.93543 0.90763 0.92738 0.94819 0.92208 0.91802 0.92635 0.92775 0.92601 0.95659 0.91610 0.85089 0.95384 0.91442 0.91799 0.87492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.86 37.16 0.37 -2.28 16 2 C -0.12 -2.61 5.05 -26.73 -0.13 -2.74 16 3 C 0.18 4.08 1.22 -68.87 -0.08 3.99 16 4 H 0.03 0.74 5.06 -51.93 -0.26 0.47 16 5 C -0.55 -14.29 6.99 -34.44 -0.24 -14.54 16 6 H 0.09 2.48 4.89 -52.49 -0.26 2.22 16 7 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 8 N -0.89 -26.38 13.96 55.43 0.77 -25.60 16 9 Si 0.87 21.12 26.60 -169.99 -4.52 16.59 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.12 6.73 56.52 0.38 -5.74 16 13 N -0.52 -10.48 3.79 -220.13 -0.83 -11.31 16 14 C 0.06 1.09 5.31 -3.81 -0.02 1.07 16 15 C -0.11 -1.69 6.08 -26.63 -0.16 -1.85 16 16 C -0.11 -1.65 5.34 -26.63 -0.14 -1.79 16 17 C -0.08 -1.32 2.25 -90.58 -0.20 -1.52 16 18 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 19 C 0.07 0.98 5.89 -3.86 -0.02 0.96 16 20 N -0.69 -10.14 6.83 -113.82 -0.78 -10.92 16 21 C 0.06 0.97 6.55 -3.82 -0.03 0.94 16 22 C -0.12 -2.23 3.33 -26.68 -0.09 -2.32 16 23 C 0.11 2.03 1.03 -67.74 -0.07 1.96 16 24 H 0.05 1.13 6.26 -51.93 -0.32 0.80 16 25 H 0.06 1.11 7.62 -51.93 -0.40 0.72 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 1.04 7.65 -51.93 -0.40 0.64 16 29 H 0.07 1.53 4.00 -51.93 -0.21 1.32 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.09 7.91 -51.93 -0.41 0.68 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.33 4.07 8.90 -39.29 -0.35 3.72 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.06 1.21 7.51 -51.93 -0.39 0.82 16 43 H 0.11 2.33 4.26 -51.93 -0.22 2.11 16 LS Contribution 306.58 15.07 4.62 4.62 Total: -1.00 -27.77 306.58 -9.11 -36.88 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -7.45 Total: 5.78 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -0.93 Total: -16.04 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.84 Total: -47.83 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.52 Total: 16.59 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.77 -9.11 -36.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715006848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.195 kcal (2) G-P(sol) polarization free energy of solvation -27.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds