Wall clock time and date at job start Mon Mar 30 2020 04:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46881 * 2 1 4 4 H 1.08995 * 109.47618 * 302.79001 * 3 2 1 5 5 C 1.50698 * 109.46869 * 182.78945 * 3 2 1 6 6 H 1.08001 * 120.00150 * 240.00422 * 5 3 2 7 7 C 1.37878 * 119.99910 * 60.00481 * 5 3 2 8 8 N 1.31506 * 120.00014 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99905 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46936 * 59.99571 * 9 7 5 11 11 H 1.48490 * 109.47046 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46868 * 300.00042 * 9 7 5 13 13 N 1.46899 * 109.46729 * 62.79551 * 3 2 1 14 14 C 1.46810 * 111.00515 * 61.99075 * 13 3 2 15 15 C 1.53055 * 109.47727 * 186.07299 * 14 13 3 16 16 C 1.53109 * 109.19373 * 300.63002 * 15 14 13 17 17 C 1.53002 * 109.26755 * 57.62784 * 16 15 14 18 18 H 1.09008 * 109.47077 * 182.63805 * 17 16 15 19 19 C 1.52984 * 109.60648 * 62.56355 * 17 16 15 20 20 N 1.46867 * 109.48701 * 180.68355 * 19 17 16 21 21 C 1.46828 * 111.25200 * 61.55214 * 20 19 17 22 22 C 1.53041 * 109.58156 * 298.39939 * 21 20 19 23 23 C 1.46864 * 111.00085 * 186.35167 * 13 3 2 24 24 H 1.09003 * 109.91626 * 294.83535 * 23 13 3 25 25 H 1.08994 * 109.47356 * 299.99577 * 1 2 3 26 26 H 1.09004 * 109.47275 * 60.00168 * 1 2 3 27 27 H 1.09000 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46694 * 240.00482 * 2 1 3 29 29 H 1.08993 * 109.47032 * 120.00544 * 2 1 3 30 30 H 0.97001 * 120.00248 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.46525 * 66.07516 * 14 13 3 32 32 H 1.09001 * 109.46770 * 306.08020 * 14 13 3 33 33 H 1.09004 * 109.51703 * 180.71304 * 15 14 13 34 34 H 1.09004 * 109.56577 * 60.57414 * 15 14 13 35 35 H 1.08998 * 109.50816 * 297.69431 * 16 15 14 36 36 H 1.08998 * 109.50524 * 177.56672 * 16 15 14 37 37 H 1.09000 * 109.47389 * 60.67610 * 19 17 16 38 38 H 1.09000 * 109.46464 * 300.68505 * 19 17 16 39 39 H 1.00897 * 110.99960 * 297.41359 * 20 19 17 40 40 H 1.09000 * 109.45797 * 58.43293 * 21 20 19 41 41 H 1.09002 * 109.45008 * 178.36663 * 21 20 19 42 42 H 1.09001 * 109.52177 * 179.17408 * 22 21 20 43 43 H 1.09009 * 109.51680 * 299.34856 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6364 1.9706 -0.8638 5 6 3.5453 1.4431 -0.0691 6 1 4.1222 1.8977 0.7227 7 6 4.1863 0.8633 -1.1434 8 7 3.4840 0.3093 -2.1074 9 14 6.0524 0.8633 -1.2287 10 1 6.6018 0.1435 -0.0518 11 1 6.4910 0.1829 -2.4736 12 1 6.5479 2.2632 -1.2282 13 7 1.6062 2.1151 1.2318 14 6 2.1707 1.4580 2.4170 15 6 1.5793 2.0882 3.6803 16 6 1.9100 3.5830 3.6992 17 6 1.3593 4.2380 2.4308 18 1 1.6334 5.2930 2.4183 19 6 -0.1647 4.1069 2.4056 20 7 -0.6891 4.7220 1.1793 21 6 -0.1725 4.0467 -0.0177 22 6 1.3518 4.1759 -0.0619 23 6 1.9475 3.5432 1.1999 24 1 3.0305 3.6661 1.1937 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.9349 -0.0983 -2.8633 31 1 3.2534 1.5837 2.4210 32 1 1.9283 0.3955 2.3933 33 1 2.0075 1.6093 4.5609 34 1 0.4975 1.9545 3.6829 35 1 2.9911 3.7162 3.7374 36 1 1.4545 4.0455 4.5748 37 1 -0.5873 4.6115 3.2745 38 1 -0.4390 3.0523 2.4290 39 1 -0.4843 5.7096 1.1541 40 1 -0.4466 2.9921 0.0135 41 1 -0.6018 4.5068 -0.9077 42 1 1.7355 3.6617 -0.9431 43 1 1.6268 5.2298 -0.1056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715006854.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:43 Heat of formation + Delta-G solvation = -22.118674 kcal Electronic energy + Delta-G solvation = -21045.503137 eV Core-core repulsion = 18316.929695 eV Total energy + Delta-G solvation = -2728.573442 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.27988 -37.59689 -35.97624 -34.04841 -32.93040 -31.37095 -30.24592 -28.36034 -25.75744 -24.90818 -23.84793 -23.75800 -21.81149 -20.80918 -19.58900 -18.10622 -17.16067 -16.76600 -16.25914 -16.13910 -15.39490 -15.28363 -14.91181 -14.66536 -14.60129 -14.06078 -13.46993 -13.26652 -13.19595 -13.12988 -13.08447 -12.77872 -12.58973 -12.50512 -12.47966 -12.12741 -11.84289 -11.76798 -11.63397 -11.53048 -11.35007 -11.09528 -10.82692 -10.57613 -10.31037 -9.18257 -8.76595 -8.00725 -6.23389 1.32239 1.34059 1.40376 2.37547 3.15261 3.41939 3.56589 3.89544 3.96850 4.11611 4.30519 4.37756 4.47409 4.49945 4.57495 4.61990 4.76749 4.77451 4.86901 4.91731 4.93707 5.02988 5.10694 5.13348 5.17069 5.17991 5.22599 5.33220 5.35477 5.37599 5.47868 5.54332 5.55430 5.57748 5.67837 5.86147 6.12322 6.23448 6.28348 6.45105 6.72083 6.79547 7.00643 7.46733 8.91453 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022302 B = 0.008587 C = 0.008203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.202639 B = 3260.018439 C = 3412.700156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 C 0.220 3.780 4 H 0.021 0.979 5 C -0.545 4.545 6 H 0.039 0.961 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.936 3.064 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.279 1.279 13 N -0.508 5.508 14 C 0.060 3.940 15 C -0.109 4.109 16 C -0.105 4.105 17 C -0.110 4.110 18 H 0.071 0.929 19 C 0.078 3.922 20 N -0.681 5.681 21 C 0.077 3.923 22 C -0.144 4.144 23 C 0.099 3.901 24 H 0.002 0.998 25 H 0.058 0.942 26 H 0.033 0.967 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.027 0.973 30 H 0.260 0.740 31 H 0.003 0.997 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.341 0.659 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.264 6.885 9.287 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.146 4.146 3 C 0.112 3.888 4 H 0.038 0.962 5 C -0.585 4.585 6 H 0.057 0.943 7 C -0.176 4.176 8 N -0.547 5.547 9 Si 0.763 3.237 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.205 1.205 13 N -0.232 5.232 14 C -0.068 4.068 15 C -0.147 4.147 16 C -0.144 4.144 17 C -0.131 4.131 18 H 0.089 0.911 19 C -0.051 4.051 20 N -0.308 5.308 21 C -0.053 4.053 22 C -0.184 4.184 23 C -0.010 4.010 24 H 0.020 0.980 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.022 0.978 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.158 0.842 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.375 6.389 9.141 13.370 hybrid contribution 3.604 0.008 -0.779 3.687 sum -3.771 6.396 8.362 11.183 Atomic orbital electron populations 1.21542 0.96147 0.99550 1.00730 1.21470 0.94502 0.98612 0.99980 1.19081 0.90783 0.91078 0.87813 0.96170 1.21928 0.94561 1.36546 1.05443 0.94285 1.25507 1.01177 0.95242 0.95630 1.69972 1.36073 1.38497 1.10162 0.85956 0.82484 0.77923 0.77295 1.20290 1.20780 1.20463 1.62338 1.57361 1.00945 1.02525 1.21932 0.95478 0.98262 0.91131 1.21614 1.01619 0.95486 0.95977 1.21465 0.99730 0.95676 0.97482 1.21853 0.98618 0.98498 0.94111 0.91113 1.21960 0.90300 1.00806 0.92075 1.60701 1.60954 1.07218 1.01958 1.21726 0.90806 0.99941 0.92804 1.22251 0.98933 0.99368 0.97837 1.21354 0.95085 0.89576 0.95034 0.98041 0.92330 0.94799 0.93975 0.92320 0.95445 0.93054 0.97832 0.92309 0.91012 0.90588 0.93870 0.89536 0.89754 0.90943 0.84204 0.91636 0.91201 0.93675 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.82 9.78 71.98 0.70 -4.11 16 2 C -0.11 -5.05 5.02 30.60 0.15 -4.90 16 3 C 0.22 10.59 1.42 44.17 0.06 10.65 16 4 H 0.02 1.10 5.80 -2.39 -0.01 1.09 16 5 C -0.55 -29.43 7.19 25.60 0.18 -29.25 16 6 H 0.04 2.17 5.86 -2.91 -0.02 2.15 16 7 C 0.02 1.34 5.30 84.66 0.45 1.79 16 8 N -0.91 -51.67 11.30 21.45 0.24 -51.43 16 9 Si 0.94 44.16 29.54 68.60 2.03 46.19 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 N -0.51 -20.11 2.41 -849.88 -2.04 -22.15 16 14 C 0.06 2.29 4.80 86.34 0.41 2.70 16 15 C -0.11 -3.07 5.75 30.65 0.18 -2.90 16 16 C -0.11 -2.73 5.50 30.63 0.17 -2.56 16 17 C -0.11 -3.10 2.59 -10.77 -0.03 -3.12 16 18 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 19 C 0.08 2.01 5.42 86.30 0.47 2.48 16 20 N -0.68 -17.98 6.86 -514.09 -3.53 -21.51 16 21 C 0.08 2.43 6.40 86.33 0.55 2.99 16 22 C -0.14 -5.17 5.13 30.68 0.16 -5.02 16 23 C 0.10 3.67 1.79 45.03 0.08 3.75 16 24 H 0.00 0.07 7.06 -2.39 -0.02 0.05 16 25 H 0.06 2.18 7.68 -2.39 -0.02 2.16 16 26 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 3.16 6.00 -2.38 -0.01 3.14 16 29 H 0.03 1.28 6.18 -2.39 -0.01 1.27 16 30 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.00 0.15 6.57 -2.38 -0.02 0.13 16 32 H 0.06 2.33 6.00 -2.39 -0.01 2.31 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 2.03 6.59 -2.38 -0.02 2.01 16 35 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 2.15 6.03 -2.39 -0.01 2.14 16 39 H 0.34 7.68 8.86 -89.70 -0.79 6.88 16 40 H 0.07 2.40 7.65 -2.39 -0.02 2.38 16 41 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.04 1.97 6.07 -2.39 -0.01 1.95 16 43 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -57.53 305.49 0.43 -57.10 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.19 Total: 19.31 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 3.54 Total: -27.51 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -5.33 Total: -95.09 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -57.53 0.43 -57.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715006854.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.986 kcal (2) G-P(sol) polarization free energy of solvation -57.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds