Wall clock time and date at job start Mon Mar 30 2020 04:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46953 * 2 1 4 4 H 1.08993 * 109.47133 * 56.50651 * 3 2 1 5 5 C 1.50703 * 109.47007 * 176.50941 * 3 2 1 6 6 H 1.07993 * 120.00267 * 114.47593 * 5 3 2 7 7 C 1.37878 * 119.99528 * 294.47160 * 5 3 2 8 8 N 1.31511 * 119.99704 * 169.52859 * 7 5 3 9 9 Si 1.86798 * 120.00132 * 349.52909 * 7 5 3 10 10 H 1.48495 * 109.47285 * 271.68870 * 9 7 5 11 11 H 1.48503 * 109.47300 * 31.69315 * 9 7 5 12 12 H 1.48504 * 109.46926 * 151.69145 * 9 7 5 13 13 N 1.46903 * 109.46778 * 296.50500 * 3 2 1 14 14 C 1.47142 * 110.99778 * 157.21837 * 13 3 2 15 15 H 1.09023 * 108.95495 * 36.04366 * 14 13 3 16 16 C 1.52986 * 109.25156 * 155.85452 * 14 13 3 17 17 C 1.52989 * 109.65130 * 176.43718 * 16 14 13 18 18 H 1.09017 * 109.73674 * 119.90103 * 17 16 14 19 19 C 1.53097 * 109.54204 * 240.32084 * 17 16 14 20 20 C 1.52954 * 109.63104 * 61.96071 * 19 17 16 21 21 C 1.52872 * 109.97748 * 55.61113 * 20 19 17 22 22 N 1.46746 * 110.17476 * 303.28631 * 21 20 19 23 23 C 1.46712 * 111.18119 * 61.01580 * 22 21 20 24 24 C 1.46523 * 111.60178 * 295.29298 * 22 21 20 25 25 H 1.08997 * 109.47410 * 306.02959 * 1 2 3 26 26 H 1.09007 * 109.47043 * 66.03510 * 1 2 3 27 27 H 1.09001 * 109.46708 * 186.02963 * 1 2 3 28 28 H 1.09000 * 109.47029 * 239.99908 * 2 1 3 29 29 H 1.08996 * 109.47248 * 119.99590 * 2 1 3 30 30 H 0.96996 * 119.99997 * 179.97438 * 8 7 5 31 31 H 1.00898 * 111.00273 * 33.26687 * 13 3 2 32 32 H 1.09241 * 109.29111 * 296.25910 * 16 14 13 33 33 H 1.08970 * 109.66522 * 55.76415 * 16 14 13 34 34 H 1.09091 * 109.47213 * 301.79984 * 19 17 16 35 35 H 1.09100 * 109.46033 * 182.10707 * 19 17 16 36 36 H 1.08933 * 109.80734 * 294.70476 * 20 19 17 37 37 H 1.09309 * 109.19513 * 175.41029 * 20 19 17 38 38 H 1.09136 * 109.38824 * 183.01868 * 21 20 19 39 39 H 1.09111 * 109.40963 * 63.59915 * 21 20 19 40 40 H 1.09167 * 109.37543 * 56.44559 * 23 22 21 41 41 H 1.08794 * 110.06578 * 176.46665 * 23 22 21 42 42 H 1.09077 * 109.75003 * 359.84764 * 24 22 21 43 43 H 1.09324 * 109.22151 * 240.71224 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6264 1.9741 0.8570 5 6 3.5445 1.4435 0.0865 6 1 4.1327 1.8139 -0.7400 7 6 4.1700 0.9714 1.2209 8 7 5.4709 0.7783 1.2225 9 14 3.1697 0.6061 2.7557 10 1 3.0648 1.8352 3.5824 11 1 1.8100 0.1550 2.3646 12 1 3.8392 -0.4625 3.5401 13 7 1.6204 2.1102 -1.2395 14 6 1.5966 3.5715 -1.0692 15 1 2.4195 3.8655 -0.4173 16 6 1.7570 4.2412 -2.4353 17 6 1.6448 5.7591 -2.2806 18 1 2.5668 6.2328 -2.6183 19 6 0.4672 6.2731 -3.1131 20 6 -0.8340 5.6545 -2.5996 21 6 -0.9968 5.9444 -1.1075 22 7 0.1659 5.4443 -0.3649 23 6 1.4005 6.1014 -0.8080 24 6 0.2664 3.9844 -0.4394 25 1 -0.3634 0.6044 0.8310 26 1 -0.3633 0.4174 -0.9391 27 1 -0.3633 -1.0220 0.1080 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 5.9110 0.4465 2.0206 31 1 0.7232 1.7676 -1.5489 32 1 2.7376 3.9913 -2.8469 33 1 0.9840 3.8806 -3.1135 34 1 0.6137 5.9983 -4.1587 35 1 0.4113 7.3596 -3.0317 36 1 -0.8222 4.5782 -2.7668 37 1 -1.6771 6.0876 -3.1439 38 1 -1.8997 5.4541 -0.7396 39 1 -1.0886 7.0210 -0.9552 40 1 1.2934 7.1827 -0.7023 41 1 2.2404 5.7637 -0.2045 42 1 -0.5568 3.5883 -1.0353 43 1 0.2027 3.5674 0.5692 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717212465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:14 Heat of formation + Delta-G solvation = -0.333753 kcal Electronic energy + Delta-G solvation = -20309.221466 eV Core-core repulsion = 17581.592690 eV Total energy + Delta-G solvation = -2727.628777 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.46911 -36.62281 -33.38741 -33.04907 -31.97115 -30.91662 -28.37394 -26.46985 -25.98031 -23.60198 -22.53064 -21.95006 -20.68396 -19.70676 -17.70960 -16.73991 -16.39650 -15.67268 -14.85061 -14.67164 -14.47997 -14.18510 -13.76261 -13.36710 -12.96987 -12.80115 -12.61148 -12.21770 -12.06559 -11.90600 -11.76993 -11.41199 -11.22999 -11.11674 -10.98928 -10.91948 -10.76818 -10.49819 -10.22769 -10.13377 -9.89448 -9.67503 -9.31654 -9.10273 -8.47505 -8.08763 -7.19318 -6.02347 -3.96933 3.29991 3.38426 3.41348 4.15677 4.45613 4.72803 4.79913 4.93821 5.05142 5.20942 5.25304 5.34899 5.40715 5.42733 5.54125 5.65191 5.71347 5.78587 5.82911 5.88296 5.90977 5.95462 6.01275 6.05128 6.06589 6.16762 6.22246 6.33557 6.46381 6.54269 6.60525 6.67800 6.74805 6.83757 6.98838 7.24464 7.31718 7.36853 7.79505 8.01705 8.29261 8.79600 9.12017 9.63105 11.11158 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.027106 B = 0.006804 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.744053 B = 4114.167165 C = 4369.786203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.135 4.135 3 C 0.194 3.806 4 H -0.004 1.004 5 C -0.498 4.498 6 H 0.078 0.922 7 C 0.070 3.930 8 N -0.899 5.899 9 Si 0.856 3.144 10 H -0.281 1.281 11 H -0.247 1.247 12 H -0.290 1.290 13 N -0.668 5.668 14 C 0.077 3.923 15 H 0.093 0.907 16 C -0.101 4.101 17 C -0.124 4.124 18 H 0.073 0.927 19 C -0.109 4.109 20 C -0.156 4.156 21 C 0.058 3.942 22 N -0.534 5.534 23 C 0.060 3.940 24 C 0.030 3.970 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.262 0.738 31 H 0.316 0.684 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.049 0.951 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.729 8.972 -5.809 16.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.173 4.173 3 C 0.085 3.915 4 H 0.014 0.986 5 C -0.536 4.536 6 H 0.096 0.904 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.683 3.317 10 H -0.207 1.207 11 H -0.172 1.172 12 H -0.216 1.216 13 N -0.298 5.298 14 C -0.034 4.034 15 H 0.111 0.889 16 C -0.140 4.140 17 C -0.144 4.144 18 H 0.092 0.908 19 C -0.146 4.146 20 C -0.195 4.195 21 C -0.070 4.070 22 N -0.257 5.257 23 C -0.068 4.068 24 C -0.100 4.100 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.134 0.866 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.001 8.982 -5.464 15.955 hybrid contribution -1.091 -0.386 0.603 1.305 sum -13.092 8.597 -4.860 16.399 Atomic orbital electron populations 1.21903 0.98673 1.00327 1.00314 1.22230 0.92471 1.00286 1.02325 1.19524 0.96493 0.89352 0.86119 0.98615 1.20997 0.88882 1.41173 1.02562 0.90369 1.24921 0.94671 0.95073 0.98458 1.69932 1.09011 1.45986 1.28787 0.87415 0.81949 0.78253 0.84043 1.20739 1.17184 1.21573 1.60702 1.32289 1.02251 1.34519 1.21818 0.96329 0.89325 0.95917 0.88924 1.21584 1.02488 0.92426 0.97467 1.21802 0.98334 0.97079 0.97231 0.90822 1.21553 0.94433 0.99584 0.99048 1.22137 0.97766 1.01658 0.97964 1.22130 0.93637 1.00406 0.90875 1.61777 1.03284 1.05802 1.54801 1.22073 0.92792 0.98417 0.93554 1.22914 0.98704 0.87273 1.01061 0.93794 0.93528 0.93830 0.91898 0.91617 0.92838 0.86586 0.91220 0.92473 0.92210 0.92382 0.91571 0.92146 0.91315 0.91176 0.91361 0.89846 0.93217 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.59 37.16 0.36 -2.28 16 2 C -0.13 -2.86 4.86 -26.73 -0.13 -2.99 16 3 C 0.19 4.44 1.45 -68.86 -0.10 4.34 16 4 H 0.00 -0.09 5.86 -51.93 -0.30 -0.39 16 5 C -0.50 -13.87 8.82 -34.44 -0.30 -14.18 16 6 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 7 C 0.07 2.01 5.40 -17.82 -0.10 1.91 16 8 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 9 Si 0.86 21.07 25.85 -169.99 -4.39 16.68 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.25 -5.64 5.12 56.52 0.29 -5.35 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 N -0.67 -13.26 6.03 -100.85 -0.61 -13.87 16 14 C 0.08 1.38 2.02 -67.66 -0.14 1.25 16 15 H 0.09 1.96 6.34 -51.92 -0.33 1.63 16 16 C -0.10 -1.57 5.09 -26.74 -0.14 -1.70 16 17 C -0.12 -1.62 3.25 -90.50 -0.29 -1.91 16 18 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 19 C -0.11 -1.20 5.30 -26.70 -0.14 -1.35 16 20 C -0.16 -1.72 5.44 -26.82 -0.15 -1.86 16 21 C 0.06 0.68 5.59 -3.97 -0.02 0.66 16 22 N -0.53 -7.68 5.08 -235.03 -1.19 -8.87 16 23 C 0.06 0.83 5.37 -3.85 -0.02 0.80 16 24 C 0.03 0.47 5.17 -4.10 -0.02 0.45 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.71 6.59 -51.93 -0.34 0.37 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.07 1.48 4.43 -51.93 -0.23 1.25 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 31 H 0.32 5.63 6.17 -39.29 -0.24 5.39 16 32 H 0.07 1.18 8.16 -51.79 -0.42 0.76 16 33 H 0.06 0.85 6.43 -51.95 -0.33 0.51 16 34 H 0.06 0.64 8.15 -51.88 -0.42 0.22 16 35 H 0.06 0.59 8.15 -51.87 -0.42 0.16 16 36 H 0.07 0.81 5.58 -51.97 -0.29 0.52 16 37 H 0.06 0.57 8.17 -51.75 -0.42 0.15 16 38 H 0.07 0.78 8.15 -51.85 -0.42 0.35 16 39 H 0.07 0.75 8.15 -51.87 -0.42 0.33 16 40 H 0.07 0.83 8.15 -51.83 -0.42 0.41 16 41 H 0.08 1.29 6.85 -52.04 -0.36 0.93 16 42 H 0.05 0.74 6.43 -51.89 -0.33 0.40 16 43 H 0.07 1.20 7.38 -51.75 -0.38 0.82 16 LS Contribution 305.67 15.07 4.61 4.61 Total: -1.00 -29.25 305.67 -9.47 -38.72 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.46 Total: 6.35 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -1.19 Total: -16.86 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -1.03 Total: -49.50 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.39 Total: 16.68 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.25 -9.47 -38.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717212465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.389 kcal (2) G-P(sol) polarization free energy of solvation -29.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds