Wall clock time and date at job start Mon Mar 30 2020 04:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47121 * 2 1 4 4 H 1.08995 * 109.47087 * 56.31803 * 3 2 1 5 5 C 1.50699 * 109.46857 * 176.31501 * 3 2 1 6 6 H 1.08000 * 120.00254 * 119.99907 * 5 3 2 7 7 C 1.37873 * 120.00313 * 300.00085 * 5 3 2 8 8 N 1.31516 * 119.99875 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00108 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47243 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47141 * 120.00460 * 9 7 5 12 12 H 1.48505 * 109.46974 * 239.99770 * 9 7 5 13 13 N 1.46895 * 109.47323 * 296.31462 * 3 2 1 14 14 C 1.47901 * 111.00011 * 151.14127 * 13 3 2 15 15 H 1.08977 * 107.22301 * 326.65984 * 14 13 3 16 16 C 1.52384 * 108.53741 * 207.65428 * 14 13 3 17 17 C 1.52374 * 112.33263 * 194.07704 * 16 14 13 18 18 H 1.10042 * 108.68082 * 171.70071 * 17 16 14 19 19 C 1.52322 * 111.55097 * 291.54954 * 17 16 14 20 20 C 1.52119 * 112.77226 * 69.77849 * 19 17 16 21 21 C 1.52174 * 112.98596 * 43.77029 * 20 19 17 22 22 N 1.45788 * 112.66591 * 314.55623 * 21 20 19 23 23 C 1.46541 * 111.99625 * 57.35584 * 22 21 20 24 24 C 1.45807 * 114.07246 * 288.76642 * 22 21 20 25 25 H 1.08998 * 109.47417 * 55.52980 * 1 2 3 26 26 H 1.08999 * 109.47423 * 175.53847 * 1 2 3 27 27 H 1.09004 * 109.47028 * 295.53418 * 1 2 3 28 28 H 1.09006 * 109.46780 * 239.99842 * 2 1 3 29 29 H 1.09001 * 109.46977 * 120.00352 * 2 1 3 30 30 H 0.97004 * 119.99762 * 180.02562 * 8 7 5 31 31 H 1.00897 * 111.00289 * 275.09539 * 13 3 2 32 32 H 1.09653 * 109.11563 * 315.29490 * 16 14 13 33 33 H 1.09624 * 109.19580 * 72.73611 * 16 14 13 34 34 H 1.09740 * 109.09840 * 191.33436 * 19 17 16 35 35 H 1.09765 * 109.05564 * 308.33655 * 19 17 16 36 36 H 1.08765 * 110.90580 * 278.61756 * 20 19 17 37 37 H 1.10667 * 107.90319 * 162.85666 * 20 19 17 38 38 H 1.09713 * 109.07637 * 193.14596 * 21 20 19 39 39 H 1.09684 * 109.12688 * 76.04028 * 21 20 19 40 40 H 1.08844 * 109.93962 * 175.47992 * 23 22 21 41 41 H 1.08873 * 109.90951 * 54.35747 * 23 22 21 42 42 H 1.09600 * 109.35146 * 309.06576 * 24 22 21 43 43 H 1.09633 * 109.27040 * 191.43328 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6238 1.9750 0.8551 5 6 3.5442 1.4434 0.0913 6 1 4.1327 1.8939 -0.6943 7 6 4.1693 0.8691 1.1778 8 7 3.4528 0.3200 2.1342 9 14 6.0339 0.8696 1.2905 10 1 6.6019 1.5439 0.0957 11 1 6.4555 1.5958 2.5154 12 1 6.5265 -0.5301 1.3507 13 7 1.6244 2.1088 -1.2414 14 6 1.4598 3.5637 -1.0325 15 1 1.1015 3.7048 -0.0131 16 6 0.4296 4.0826 -2.0283 17 6 0.4373 5.6029 -2.1302 18 1 -0.2146 5.9036 -2.9642 19 6 -0.0747 6.2521 -0.8509 20 6 0.8864 6.0903 0.3170 21 6 2.3369 6.3433 -0.0676 22 7 2.7111 5.6841 -1.3129 23 6 1.8557 6.0945 -2.4298 24 6 2.8174 4.2336 -1.2094 25 1 -0.3634 0.5816 -0.8472 26 1 -0.3634 -1.0245 -0.0799 27 1 -0.3633 0.4430 0.9273 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8926 -0.0837 2.8988 31 1 2.2770 1.9223 -1.9879 32 1 0.6374 3.6542 -3.0161 33 1 -0.5681 3.7462 -1.7230 34 1 -0.2447 7.3207 -1.0337 35 1 -1.0423 5.8068 -0.5856 36 1 0.7737 5.1125 0.7798 37 1 0.6078 6.8297 1.0918 38 1 2.9892 5.9867 0.7392 39 1 2.4988 7.4235 -0.1682 40 1 2.2127 5.6460 -3.3550 41 1 1.8573 7.1795 -2.5188 42 1 3.4574 3.9762 -0.3577 43 1 3.2941 3.8402 -2.1149 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717212466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:16 Heat of formation + Delta-G solvation = -30.174696 kcal Electronic energy + Delta-G solvation = -20408.049059 eV Core-core repulsion = 17679.126282 eV Total energy + Delta-G solvation = -2728.922777 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.37927 -37.88772 -34.82056 -34.11450 -33.42941 -32.32992 -29.83424 -27.77777 -27.14020 -24.78885 -24.13577 -23.06085 -21.81532 -21.47623 -19.38958 -18.48166 -17.11640 -16.73500 -16.10383 -15.89592 -15.58834 -15.34077 -15.03860 -14.67238 -14.52210 -14.09646 -13.93121 -13.45769 -13.18973 -13.16104 -12.93697 -12.79255 -12.60151 -12.55558 -12.24975 -12.19700 -12.09204 -12.02812 -11.63567 -11.52135 -11.34015 -11.06575 -10.84035 -10.81188 -10.43887 -9.45132 -8.57418 -8.03069 -6.24430 1.35487 1.39205 1.48635 2.40050 3.11791 3.15780 3.62201 3.77435 3.92943 4.02484 4.13164 4.28282 4.30811 4.36869 4.54786 4.57234 4.61073 4.66670 4.72955 4.76653 4.91593 4.93766 4.98662 5.01845 5.04369 5.17425 5.19592 5.22275 5.29206 5.36851 5.40753 5.46445 5.49660 5.55761 5.64829 5.78015 6.10641 6.20906 6.29270 6.41046 6.46040 6.84233 7.05187 7.46372 8.92672 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021379 B = 0.007801 C = 0.006502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.355137 B = 3588.372837 C = 4305.430981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.228 3.772 4 H -0.010 1.010 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.944 3.056 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.281 1.281 13 N -0.679 5.679 14 C 0.071 3.929 15 H 0.047 0.953 16 C -0.088 4.088 17 C -0.117 4.117 18 H 0.092 0.908 19 C -0.101 4.101 20 C -0.153 4.153 21 C 0.070 3.930 22 N -0.557 5.557 23 C 0.069 3.931 24 C 0.060 3.940 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.026 0.974 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.260 0.740 31 H 0.328 0.672 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.736 11.761 -7.589 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.119 3.881 4 H 0.008 0.992 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.181 4.181 8 N -0.553 5.553 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.207 1.207 13 N -0.308 5.308 14 C -0.040 4.040 15 H 0.065 0.935 16 C -0.126 4.126 17 C -0.137 4.137 18 H 0.110 0.890 19 C -0.138 4.138 20 C -0.192 4.192 21 C -0.058 4.058 22 N -0.278 5.278 23 C -0.058 4.058 24 C -0.069 4.069 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.144 0.856 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.067 0.933 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.950 11.673 -7.410 15.052 hybrid contribution 1.302 -0.615 1.053 1.784 sum -4.648 11.058 -6.357 13.576 Atomic orbital electron populations 1.21563 0.96657 0.99844 1.00194 1.21374 0.94208 0.98683 0.99941 1.18887 0.91605 0.91174 0.86454 0.99166 1.22189 0.93672 1.36766 1.05715 0.92711 1.25630 1.01717 0.95044 0.95662 1.70022 1.36215 1.38888 1.10142 0.85717 0.81708 0.77627 0.77852 1.19329 1.21129 1.20721 1.61247 1.52675 1.08406 1.08448 1.22048 0.95358 0.88224 0.98390 0.93479 1.21252 0.97900 0.94730 0.98760 1.21541 0.99178 0.94268 0.98727 0.88952 1.21216 0.97605 1.01356 0.93656 1.21948 0.96903 1.01418 0.98936 1.21699 0.93741 0.99688 0.90720 1.60125 1.53809 1.07918 1.05993 1.22050 0.89561 1.01076 0.93138 1.22355 0.96739 0.86693 1.01149 0.92292 0.93632 0.95493 0.95316 0.92265 0.93109 0.85559 0.91997 0.93038 0.90231 0.92605 0.94479 0.91114 0.93339 0.89186 0.90644 0.88928 0.93303 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 9.84 71.98 0.71 -4.46 16 2 C -0.10 -5.03 5.44 30.59 0.17 -4.87 16 3 C 0.23 11.33 2.00 44.17 0.09 11.42 16 4 H -0.01 -0.55 7.28 -2.39 -0.02 -0.56 16 5 C -0.54 -29.06 7.13 25.60 0.18 -28.88 16 6 H 0.05 2.89 7.00 -2.91 -0.02 2.87 16 7 C 0.02 1.04 5.30 84.65 0.45 1.49 16 8 N -0.91 -52.61 11.30 21.45 0.24 -52.36 16 9 Si 0.94 43.85 29.54 68.60 2.03 45.88 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 13 N -0.68 -28.06 5.35 -473.15 -2.53 -30.59 16 14 C 0.07 2.61 2.07 44.33 0.09 2.70 16 15 H 0.05 1.99 4.69 -2.40 -0.01 1.98 16 16 C -0.09 -2.57 4.95 30.18 0.15 -2.42 16 17 C -0.12 -2.67 2.91 -11.20 -0.03 -2.70 16 18 H 0.09 1.70 8.23 -1.83 -0.02 1.68 16 19 C -0.10 -2.25 5.37 30.08 0.16 -2.08 16 20 C -0.15 -4.06 5.09 30.03 0.15 -3.91 16 21 C 0.07 1.94 5.76 86.24 0.50 2.44 16 22 N -0.56 -16.63 4.78 -902.32 -4.31 -20.95 16 23 C 0.07 1.61 5.70 86.40 0.49 2.10 16 24 C 0.06 2.19 4.37 86.32 0.38 2.57 16 25 H 0.06 2.32 7.59 -2.39 -0.02 2.30 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.06 3.26 5.98 -2.39 -0.01 3.24 16 30 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.33 13.44 7.79 -89.70 -0.70 12.74 16 32 H 0.06 1.76 8.19 -2.04 -0.02 1.74 16 33 H 0.05 1.56 8.19 -2.05 -0.02 1.54 16 34 H 0.08 1.41 8.20 -1.99 -0.02 1.39 16 35 H 0.06 1.27 8.20 -1.98 -0.02 1.25 16 36 H 0.04 1.23 5.77 -2.51 -0.01 1.21 16 37 H 0.07 1.61 8.28 -1.49 -0.01 1.60 16 38 H 0.05 1.54 8.11 -2.01 -0.02 1.52 16 39 H 0.09 2.05 8.20 -2.02 -0.02 2.03 16 40 H 0.08 1.73 8.13 -2.47 -0.02 1.71 16 41 H 0.09 1.77 8.13 -2.45 -0.02 1.75 16 42 H 0.05 2.15 6.77 -2.07 -0.01 2.14 16 43 H 0.06 2.19 7.81 -2.05 -0.02 2.17 16 Total: -1.00 -58.00 313.50 -0.79 -58.79 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.30 Total: 25.83 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 3.48 Total: -26.59 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -6.60 Total: -103.90 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -58.00 -0.79 -58.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717212466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.619 kcal (2) G-P(sol) polarization free energy of solvation -58.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds