Wall clock time and date at job start Mon Mar 30 2020 04:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46989 * 2 1 4 4 H 1.09005 * 109.46787 * 303.33679 * 3 2 1 5 5 C 1.50692 * 109.47050 * 183.33593 * 3 2 1 6 6 H 1.08003 * 120.00202 * 245.44695 * 5 3 2 7 7 C 1.37882 * 120.00353 * 65.44316 * 5 3 2 8 8 N 1.31509 * 120.00272 * 190.61211 * 7 5 3 9 9 Si 1.86805 * 119.99697 * 10.61251 * 7 5 3 10 10 H 1.48494 * 109.46951 * 88.37365 * 9 7 5 11 11 H 1.48496 * 109.46742 * 208.37587 * 9 7 5 12 12 H 1.48505 * 109.46827 * 328.37351 * 9 7 5 13 13 N 1.46897 * 109.46968 * 63.33052 * 3 2 1 14 14 C 1.48009 * 110.99967 * 204.91729 * 13 3 2 15 15 H 1.09036 * 107.05884 * 327.80451 * 14 13 3 16 16 C 1.52318 * 108.43434 * 208.89692 * 14 13 3 17 17 C 1.52313 * 112.66275 * 195.34365 * 16 14 13 18 18 H 1.10055 * 108.71055 * 170.85814 * 17 16 14 19 19 C 1.52389 * 111.56809 * 290.68317 * 17 16 14 20 20 C 1.52189 * 112.44759 * 68.94390 * 19 17 16 21 21 C 1.52215 * 112.67778 * 44.99928 * 20 19 17 22 22 N 1.45798 * 112.58033 * 313.69626 * 21 20 19 23 23 C 1.46527 * 112.08518 * 57.45538 * 22 21 20 24 24 C 1.45801 * 114.07811 * 288.90249 * 22 21 20 25 25 H 1.09000 * 109.47217 * 301.57338 * 1 2 3 26 26 H 1.08998 * 109.47512 * 61.57608 * 1 2 3 27 27 H 1.09004 * 109.47375 * 181.57332 * 1 2 3 28 28 H 1.09000 * 109.46998 * 239.99905 * 2 1 3 29 29 H 1.08996 * 109.47127 * 119.99664 * 2 1 3 30 30 H 0.96995 * 120.00164 * 180.02562 * 8 7 5 31 31 H 1.00902 * 110.99809 * 80.96970 * 13 3 2 32 32 H 1.09679 * 109.14997 * 316.79874 * 16 14 13 33 33 H 1.09715 * 109.08585 * 74.00428 * 16 14 13 34 34 H 1.09675 * 109.15947 * 307.51765 * 19 17 16 35 35 H 1.09700 * 109.10240 * 190.25408 * 19 17 16 36 36 H 1.08723 * 110.85886 * 280.13483 * 20 19 17 37 37 H 1.10572 * 108.00413 * 164.11298 * 20 19 17 38 38 H 1.09669 * 109.10873 * 192.23206 * 21 20 19 39 39 H 1.09699 * 109.06980 * 75.06378 * 21 20 19 40 40 H 1.08847 * 109.94346 * 54.74264 * 23 22 21 41 41 H 1.08861 * 109.92429 * 175.87378 * 23 22 21 42 42 H 1.09649 * 109.28536 * 309.24429 * 24 22 21 43 43 H 1.09644 * 109.27220 * 191.74827 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6285 1.9733 -0.8586 5 6 3.5446 1.4434 -0.0827 6 1 4.1307 1.8157 0.7445 7 6 4.1732 0.9687 -1.2143 8 7 5.4737 0.7731 -1.2111 9 14 3.1775 0.6033 -2.7521 10 1 3.0791 1.8312 -3.5814 11 1 3.8468 -0.4685 -3.5320 12 1 1.8151 0.1569 -2.3651 13 7 1.6171 2.1114 1.2376 14 6 1.5445 3.5777 1.0500 15 1 2.3151 3.8462 0.3268 16 6 1.8220 4.2490 2.3888 17 6 1.4133 5.7162 2.4056 18 1 1.4860 6.0911 3.4377 19 6 2.3175 6.5598 1.5152 20 6 2.1236 6.2566 0.0364 21 6 0.6558 6.1625 -0.3558 22 7 -0.1211 5.3510 0.5735 23 6 -0.0403 5.8563 1.9465 24 6 0.1661 3.9235 0.5002 25 1 -0.3634 0.5381 0.8755 26 1 -0.3634 0.4891 -0.9037 27 1 -0.3634 -1.0273 0.0282 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.9159 0.4395 -2.0074 31 1 2.2295 1.8748 2.0039 32 1 1.2797 3.7148 3.1784 33 1 2.8931 4.1717 2.6136 34 1 3.3638 6.3765 1.7879 35 1 2.1098 7.6217 1.6960 36 1 2.6581 5.3533 -0.2469 37 1 2.5788 7.0804 -0.5439 38 1 0.5799 5.7327 -1.3619 39 1 0.2300 7.1727 -0.3955 40 1 -0.3355 6.9036 1.9747 41 1 -0.6887 5.2707 2.5960 42 1 0.1048 3.5949 -0.5441 43 1 -0.5937 3.3719 1.0665 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717212468.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:19 Heat of formation + Delta-G solvation = -7.654111 kcal Electronic energy + Delta-G solvation = -20443.541387 eV Core-core repulsion = 17715.595176 eV Total energy + Delta-G solvation = -2727.946211 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.20179 -36.34641 -33.19219 -32.98964 -31.91675 -31.16075 -28.54531 -26.30561 -26.01747 -23.36481 -22.48026 -21.95615 -20.45922 -19.59131 -18.14848 -16.95905 -15.83185 -15.12619 -14.88789 -14.73962 -14.40911 -13.78593 -13.73321 -13.30583 -13.05390 -12.81153 -12.53903 -12.23923 -12.01176 -11.74949 -11.54723 -11.45521 -11.15230 -11.09627 -10.95959 -10.78372 -10.63872 -10.47901 -10.25316 -9.97607 -9.71977 -9.66028 -9.37062 -9.08858 -8.50573 -7.87393 -7.24010 -6.14771 -4.13071 3.25175 3.34976 3.37955 4.23552 4.38044 4.79647 4.86585 5.00277 5.16385 5.19957 5.27939 5.37970 5.48185 5.57815 5.61912 5.70494 5.82305 5.92061 5.98414 6.03579 6.09948 6.16696 6.18414 6.24390 6.25507 6.31551 6.37103 6.41207 6.52369 6.59754 6.72651 6.82234 6.86410 7.09615 7.19565 7.38271 7.43545 7.55038 7.60785 8.06247 8.40195 8.50445 8.90226 9.51163 10.98330 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023205 B = 0.007683 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.340422 B = 3643.334127 C = 3969.454424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.188 3.812 4 H 0.025 0.975 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.076 3.924 8 N -0.896 5.896 9 Si 0.859 3.141 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.241 1.241 13 N -0.679 5.679 14 C 0.059 3.941 15 H 0.059 0.941 16 C -0.109 4.109 17 C -0.117 4.117 18 H 0.066 0.934 19 C -0.103 4.103 20 C -0.159 4.159 21 C 0.070 3.930 22 N -0.548 5.548 23 C 0.071 3.929 24 C 0.080 3.920 25 H 0.060 0.940 26 H 0.036 0.964 27 H 0.030 0.970 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.263 0.737 31 H 0.333 0.667 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.883 9.434 4.534 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C 0.079 3.921 4 H 0.043 0.957 5 C -0.585 4.585 6 H 0.087 0.913 7 C -0.127 4.127 8 N -0.533 5.533 9 Si 0.686 3.314 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.165 1.165 13 N -0.309 5.309 14 C -0.053 4.053 15 H 0.077 0.923 16 C -0.147 4.147 17 C -0.138 4.138 18 H 0.084 0.916 19 C -0.141 4.141 20 C -0.198 4.198 21 C -0.059 4.059 22 N -0.269 5.269 23 C -0.057 4.057 24 C -0.049 4.049 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.150 0.850 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.861 9.304 4.145 14.890 hybrid contribution 1.798 -0.123 -0.751 1.953 sum -9.062 9.181 3.394 13.340 Atomic orbital electron populations 1.21721 0.97919 0.99077 1.01147 1.21936 0.93476 0.99164 1.00856 1.19482 0.93687 0.90690 0.88259 0.95664 1.21719 0.90493 1.43016 1.03303 0.91325 1.24971 0.94653 0.94247 0.98804 1.69959 1.09223 1.45039 1.29090 0.87342 0.82317 0.78276 0.83418 1.20747 1.21499 1.16506 1.61150 1.56030 1.05495 1.08208 1.21992 0.97584 0.89649 0.96066 0.92307 1.21489 1.01154 0.94110 0.97967 1.21497 0.97252 0.95801 0.99233 0.91593 1.21239 0.99571 0.98651 0.94660 1.22045 0.98474 1.03065 0.96186 1.21694 0.90672 0.97525 0.95968 1.60267 1.56342 1.03390 1.06914 1.21911 0.94491 0.99971 0.89358 1.21780 0.95964 0.85767 1.01356 0.92058 0.94489 0.95130 0.92622 0.93048 0.92741 0.85049 0.91813 0.92524 0.92333 0.92806 0.90617 0.92701 0.91275 0.91674 0.91233 0.90751 0.91701 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.81 37.16 0.36 -2.23 16 2 C -0.12 -2.51 4.92 -26.73 -0.13 -2.64 16 3 C 0.19 4.27 1.33 -68.87 -0.09 4.18 16 4 H 0.03 0.60 6.10 -51.93 -0.32 0.29 16 5 C -0.55 -14.82 8.69 -34.44 -0.30 -15.12 16 6 H 0.07 2.04 7.95 -52.48 -0.42 1.62 16 7 C 0.08 2.15 5.39 -17.82 -0.10 2.06 16 8 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 9 Si 0.86 20.95 25.85 -169.99 -4.39 16.56 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.24 -5.50 5.12 56.52 0.29 -5.21 16 13 N -0.68 -13.25 5.38 -100.86 -0.54 -13.79 16 14 C 0.06 1.03 1.91 -67.77 -0.13 0.90 16 15 H 0.06 1.22 4.96 -51.91 -0.26 0.97 16 16 C -0.11 -1.66 4.53 -27.43 -0.12 -1.78 16 17 C -0.12 -1.51 2.91 -91.24 -0.27 -1.77 16 18 H 0.07 0.76 8.23 -51.33 -0.42 0.33 16 19 C -0.10 -1.34 5.38 -27.46 -0.15 -1.49 16 20 C -0.16 -2.23 5.13 -27.55 -0.14 -2.38 16 21 C 0.07 0.95 5.76 -4.82 -0.03 0.92 16 22 N -0.55 -7.81 4.78 -236.55 -1.13 -8.94 16 23 C 0.07 0.88 5.70 -3.99 -0.02 0.86 16 24 C 0.08 1.30 5.15 -4.74 -0.02 1.27 16 25 H 0.06 1.09 7.66 -51.93 -0.40 0.69 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 1.27 4.43 -51.93 -0.23 1.04 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.33 6.67 7.94 -39.29 -0.31 6.35 16 32 H 0.06 0.93 8.18 -51.54 -0.42 0.51 16 33 H 0.06 0.92 8.20 -51.52 -0.42 0.50 16 34 H 0.06 0.80 8.20 -51.55 -0.42 0.38 16 35 H 0.05 0.61 8.20 -51.53 -0.42 0.19 16 36 H 0.08 1.29 5.72 -52.08 -0.30 0.99 16 37 H 0.05 0.70 8.27 -51.03 -0.42 0.27 16 38 H 0.07 0.97 8.11 -51.55 -0.42 0.55 16 39 H 0.06 0.78 8.20 -51.53 -0.42 0.35 16 40 H 0.07 0.77 8.13 -52.02 -0.42 0.35 16 41 H 0.07 0.90 8.13 -52.01 -0.42 0.48 16 42 H 0.06 1.15 7.61 -51.56 -0.39 0.75 16 43 H 0.08 1.25 8.19 -51.56 -0.42 0.83 16 LS Contribution 311.06 15.07 4.69 4.69 Total: -1.00 -28.23 311.06 -9.52 -37.76 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -7.78 Total: 7.27 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -1.14 Total: -17.22 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.90 Total: -49.05 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.39 Total: 16.56 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.23 -9.52 -37.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717212468.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.102 kcal (2) G-P(sol) polarization free energy of solvation -28.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds