Wall clock time and date at job start Mon Mar 30 2020 04:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46826 * 2 1 4 4 H 1.09001 * 109.47107 * 174.77376 * 3 2 1 5 5 C 1.50706 * 109.47128 * 54.78081 * 3 2 1 6 6 H 1.07998 * 119.99759 * 239.99907 * 5 3 2 7 7 C 1.37871 * 120.00262 * 59.72385 * 5 3 2 8 8 N 1.31517 * 119.99858 * 0.27274 * 7 5 3 9 9 Si 1.86805 * 120.00241 * 180.27762 * 7 5 3 10 10 H 1.48500 * 109.47124 * 89.99869 * 9 7 5 11 11 H 1.48497 * 109.47057 * 209.99534 * 9 7 5 12 12 H 1.48490 * 109.46965 * 329.99808 * 9 7 5 13 13 N 1.46897 * 109.47775 * 294.78063 * 3 2 1 14 14 C 1.47138 * 110.99655 * 273.90016 * 13 3 2 15 15 H 1.09016 * 108.96227 * 33.71702 * 14 13 3 16 16 C 1.52996 * 109.25366 * 153.53183 * 14 13 3 17 17 C 1.52981 * 109.65230 * 176.43793 * 16 14 13 18 18 H 1.09015 * 109.74310 * 119.90216 * 17 16 14 19 19 C 1.53101 * 109.54009 * 240.31641 * 17 16 14 20 20 C 1.52965 * 109.63054 * 61.95684 * 19 17 16 21 21 C 1.52875 * 109.97072 * 55.61485 * 20 19 17 22 22 N 1.46745 * 110.17539 * 303.28113 * 21 20 19 23 23 C 1.46710 * 111.17944 * 61.02098 * 22 21 20 24 24 C 1.46522 * 111.60329 * 295.29884 * 22 21 20 25 25 H 1.09001 * 109.47041 * 65.53321 * 1 2 3 26 26 H 1.09004 * 109.47113 * 185.52710 * 1 2 3 27 27 H 1.08994 * 109.47508 * 305.52289 * 1 2 3 28 28 H 1.09002 * 109.47422 * 240.00303 * 2 1 3 29 29 H 1.08996 * 109.47148 * 120.00072 * 2 1 3 30 30 H 0.96999 * 120.00174 * 180.02562 * 8 7 5 31 31 H 1.00906 * 110.99785 * 37.84191 * 13 3 2 32 32 H 1.09243 * 109.28167 * 296.25561 * 16 14 13 33 33 H 1.08967 * 109.66809 * 55.75670 * 16 14 13 34 34 H 1.09086 * 109.47076 * 301.79999 * 19 17 16 35 35 H 1.09095 * 109.46376 * 182.10161 * 19 17 16 36 36 H 1.08932 * 109.80423 * 294.71051 * 20 19 17 37 37 H 1.09308 * 109.19108 * 175.41151 * 20 19 17 38 38 H 1.09136 * 109.38251 * 183.02028 * 21 20 19 39 39 H 1.09113 * 109.41101 * 63.60189 * 21 20 19 40 40 H 1.09173 * 109.37878 * 56.44212 * 23 22 21 41 41 H 1.08790 * 110.07012 * 176.46234 * 23 22 21 42 42 H 1.09068 * 109.74813 * 359.84222 * 24 22 21 43 43 H 1.09328 * 109.21711 * 240.71010 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1259 1.4440 0.0936 5 6 1.4348 2.1892 1.1608 6 1 0.8258 3.0630 0.9822 7 6 1.6539 1.7535 2.4504 8 7 2.3955 0.6894 2.6678 9 14 0.8974 2.6746 3.8887 10 1 -0.4420 2.1085 4.1897 11 1 1.7725 2.5361 5.0805 12 1 0.7605 4.1113 3.5395 13 7 1.6559 2.0978 -1.2574 14 6 2.6496 1.8395 -2.3114 15 1 3.0632 0.8407 -2.1712 16 6 1.9691 1.9281 -3.6788 17 6 3.0111 1.7490 -4.7845 18 1 2.7575 0.8801 -5.3922 19 6 3.0437 3.0009 -5.6652 20 6 3.4586 4.2098 -4.8247 21 6 4.7983 3.9354 -4.1412 22 7 4.7108 2.7184 -3.3260 23 6 4.3914 1.5489 -4.1521 24 6 3.7666 2.8787 -2.2170 25 1 -0.3633 0.4256 -0.9354 26 1 -0.3633 -1.0229 0.0990 27 1 -0.3634 0.5971 0.8363 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.5494 0.3826 3.5751 31 1 0.7349 1.8073 -1.5499 32 1 1.2173 1.1397 -3.7594 33 1 1.4815 2.8970 -3.7838 34 1 2.0532 3.1738 -6.0882 35 1 3.7602 2.8571 -6.4751 36 1 2.6970 4.4160 -4.0736 37 1 3.5590 5.0823 -5.4753 38 1 5.0589 4.7811 -3.5025 39 1 5.5729 3.8092 -4.8992 40 1 5.1385 1.4484 -4.9419 41 1 4.3925 0.6487 -3.5412 42 1 3.3352 3.8802 -2.2422 43 1 4.2979 2.7487 -1.2704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717212470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:22 Heat of formation + Delta-G solvation = -7.081462 kcal Electronic energy + Delta-G solvation = -20170.553663 eV Core-core repulsion = 17442.632284 eV Total energy + Delta-G solvation = -2727.921379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.41807 -36.48684 -33.41801 -33.03490 -31.59670 -30.45574 -28.04790 -26.14507 -25.65189 -23.55128 -23.24304 -21.89634 -20.75567 -19.06721 -17.66589 -16.53188 -16.11155 -15.26628 -14.96637 -14.67381 -14.50146 -13.71441 -13.50998 -13.28730 -13.04583 -12.67791 -12.40628 -12.27547 -11.94331 -11.67404 -11.29383 -11.17804 -11.12848 -10.99811 -10.88299 -10.78830 -10.58573 -10.48661 -10.27201 -10.11881 -9.72498 -9.64425 -9.51383 -8.91761 -8.31041 -7.79218 -7.16992 -5.94059 -3.95398 3.34139 3.41224 3.45471 4.23752 4.47470 4.73395 4.78154 4.93200 5.14148 5.27646 5.33760 5.37541 5.43919 5.47762 5.61120 5.67837 5.74310 5.85189 5.93265 5.95761 6.04382 6.08227 6.13936 6.29742 6.32855 6.35739 6.38096 6.41962 6.58173 6.67893 6.75624 6.91939 7.26912 7.31742 7.42201 7.48091 7.55616 7.74246 7.93485 8.33197 8.58978 8.66471 9.10312 9.68143 11.12966 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.031947 B = 0.005817 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.241692 B = 4812.061064 C = 5116.722154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.487 4.487 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.680 5.680 14 C 0.073 3.927 15 H 0.041 0.959 16 C -0.118 4.118 17 C -0.122 4.122 18 H 0.070 0.930 19 C -0.108 4.108 20 C -0.158 4.158 21 C 0.059 3.941 22 N -0.537 5.537 23 C 0.061 3.939 24 C 0.070 3.930 25 H 0.026 0.974 26 H 0.022 0.978 27 H 0.069 0.931 28 H 0.009 0.991 29 H 0.092 0.908 30 H 0.258 0.742 31 H 0.327 0.673 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 2.355 -14.639 14.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.184 4.184 3 C 0.109 3.891 4 H 0.052 0.948 5 C -0.526 4.526 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.312 5.312 14 C -0.038 4.038 15 H 0.059 0.941 16 C -0.156 4.156 17 C -0.142 4.142 18 H 0.088 0.912 19 C -0.146 4.146 20 C -0.197 4.197 21 C -0.070 4.070 22 N -0.259 5.259 23 C -0.067 4.067 24 C -0.058 4.058 25 H 0.045 0.955 26 H 0.041 0.959 27 H 0.088 0.912 28 H 0.027 0.973 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.145 0.855 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.559 2.794 -14.072 14.573 hybrid contribution -1.476 -0.466 0.266 1.571 sum 1.083 2.327 -13.806 14.043 Atomic orbital electron populations 1.21595 0.97781 0.98649 1.00652 1.22101 0.94904 1.01301 1.00133 1.19240 0.95977 0.88406 0.85513 0.94812 1.21064 1.30432 1.11376 0.89723 0.92128 1.24908 0.95578 0.95174 0.98692 1.69883 1.39061 1.24003 1.20614 0.86595 0.78914 0.80332 0.82153 1.20931 1.21443 1.19957 1.60874 1.03407 1.63333 1.03566 1.21691 0.94188 0.97157 0.90752 0.94100 1.21842 0.97367 1.02126 0.94242 1.21768 0.97371 0.98065 0.97031 0.91196 1.21546 1.00955 0.94671 0.97396 1.22155 0.99728 0.97797 1.00030 1.22129 0.95760 0.92852 0.96258 1.61900 1.49949 1.03117 1.10951 1.22028 0.94120 0.94343 0.96239 1.22060 0.91266 0.99056 0.93414 0.95530 0.95861 0.91214 0.97263 0.88940 0.93165 0.85491 0.92600 0.91211 0.92320 0.92381 0.91088 0.92124 0.90954 0.91385 0.91445 0.90421 0.92036 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.40 37.16 0.35 -2.42 16 2 C -0.14 -3.40 5.49 -26.73 -0.15 -3.54 16 3 C 0.22 5.29 2.13 -68.87 -0.15 5.14 16 4 H 0.03 0.93 7.21 -51.93 -0.37 0.55 16 5 C -0.49 -13.10 7.25 -34.44 -0.25 -13.35 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.55 5.27 -17.82 -0.09 1.46 16 8 N -0.90 -25.34 11.37 55.43 0.63 -24.70 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 13 N -0.68 -14.11 6.05 -100.86 -0.61 -14.72 16 14 C 0.07 1.30 2.02 -67.65 -0.14 1.17 16 15 H 0.04 0.80 5.96 -51.92 -0.31 0.49 16 16 C -0.12 -1.72 4.72 -26.74 -0.13 -1.85 16 17 C -0.12 -1.51 3.25 -90.50 -0.29 -1.81 16 18 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 19 C -0.11 -1.19 5.30 -26.70 -0.14 -1.33 16 20 C -0.16 -1.84 5.44 -26.81 -0.15 -1.98 16 21 C 0.06 0.73 5.59 -3.97 -0.02 0.71 16 22 N -0.54 -8.00 5.08 -235.04 -1.19 -9.20 16 23 C 0.06 0.82 5.37 -3.85 -0.02 0.80 16 24 C 0.07 1.22 5.39 -4.10 -0.02 1.20 16 25 H 0.03 0.50 6.65 -51.93 -0.35 0.16 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 1.64 6.83 -51.93 -0.35 1.28 16 28 H 0.01 0.19 7.46 -51.93 -0.39 -0.19 16 29 H 0.09 2.45 6.22 -51.93 -0.32 2.12 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.33 6.54 6.25 -39.29 -0.25 6.30 16 32 H 0.06 0.80 8.16 -51.79 -0.42 0.38 16 33 H 0.07 1.04 6.43 -51.95 -0.33 0.70 16 34 H 0.06 0.62 8.15 -51.88 -0.42 0.20 16 35 H 0.06 0.58 8.15 -51.88 -0.42 0.16 16 36 H 0.07 0.95 5.58 -51.97 -0.29 0.66 16 37 H 0.06 0.61 8.17 -51.76 -0.42 0.19 16 38 H 0.07 0.90 8.15 -51.85 -0.42 0.48 16 39 H 0.07 0.76 8.15 -51.87 -0.42 0.34 16 40 H 0.07 0.80 8.15 -51.83 -0.42 0.38 16 41 H 0.08 1.13 6.85 -52.05 -0.36 0.77 16 42 H 0.06 1.09 6.55 -51.89 -0.34 0.75 16 43 H 0.07 1.51 7.58 -51.74 -0.39 1.12 16 LS Contribution 309.04 15.07 4.66 4.66 Total: -1.00 -27.10 309.04 -10.14 -37.24 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -7.40 Total: 6.17 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -1.20 Total: -15.81 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -1.17 Total: -48.63 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.10 -10.14 -37.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717212470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.158 kcal (2) G-P(sol) polarization free energy of solvation -27.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds