Wall clock time and date at job start Mon Mar 30 2020 04:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46826 * 2 1 4 4 H 1.09001 * 109.47107 * 174.77376 * 3 2 1 5 5 C 1.50706 * 109.47128 * 54.78081 * 3 2 1 6 6 H 1.07998 * 119.99759 * 239.99907 * 5 3 2 7 7 C 1.37871 * 120.00262 * 59.72385 * 5 3 2 8 8 N 1.31517 * 119.99858 * 0.27274 * 7 5 3 9 9 Si 1.86805 * 120.00241 * 180.27762 * 7 5 3 10 10 H 1.48500 * 109.47124 * 89.99869 * 9 7 5 11 11 H 1.48497 * 109.47057 * 209.99534 * 9 7 5 12 12 H 1.48490 * 109.46965 * 329.99808 * 9 7 5 13 13 N 1.46897 * 109.47775 * 294.78063 * 3 2 1 14 14 C 1.47138 * 110.99655 * 273.90016 * 13 3 2 15 15 H 1.09016 * 108.96227 * 33.71702 * 14 13 3 16 16 C 1.52996 * 109.25366 * 153.53183 * 14 13 3 17 17 C 1.52981 * 109.65230 * 176.43793 * 16 14 13 18 18 H 1.09015 * 109.74310 * 119.90216 * 17 16 14 19 19 C 1.53101 * 109.54009 * 240.31641 * 17 16 14 20 20 C 1.52965 * 109.63054 * 61.95684 * 19 17 16 21 21 C 1.52875 * 109.97072 * 55.61485 * 20 19 17 22 22 N 1.46745 * 110.17539 * 303.28113 * 21 20 19 23 23 C 1.46710 * 111.17944 * 61.02098 * 22 21 20 24 24 C 1.46522 * 111.60329 * 295.29884 * 22 21 20 25 25 H 1.09001 * 109.47041 * 65.53321 * 1 2 3 26 26 H 1.09004 * 109.47113 * 185.52710 * 1 2 3 27 27 H 1.08994 * 109.47508 * 305.52289 * 1 2 3 28 28 H 1.09002 * 109.47422 * 240.00303 * 2 1 3 29 29 H 1.08996 * 109.47148 * 120.00072 * 2 1 3 30 30 H 0.96999 * 120.00174 * 180.02562 * 8 7 5 31 31 H 1.00906 * 110.99785 * 37.84191 * 13 3 2 32 32 H 1.09243 * 109.28167 * 296.25561 * 16 14 13 33 33 H 1.08967 * 109.66809 * 55.75670 * 16 14 13 34 34 H 1.09086 * 109.47076 * 301.79999 * 19 17 16 35 35 H 1.09095 * 109.46376 * 182.10161 * 19 17 16 36 36 H 1.08932 * 109.80423 * 294.71051 * 20 19 17 37 37 H 1.09308 * 109.19108 * 175.41151 * 20 19 17 38 38 H 1.09136 * 109.38251 * 183.02028 * 21 20 19 39 39 H 1.09113 * 109.41101 * 63.60189 * 21 20 19 40 40 H 1.09173 * 109.37878 * 56.44212 * 23 22 21 41 41 H 1.08790 * 110.07012 * 176.46234 * 23 22 21 42 42 H 1.09068 * 109.74813 * 359.84222 * 24 22 21 43 43 H 1.09328 * 109.21711 * 240.71010 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1259 1.4440 0.0936 5 6 1.4348 2.1892 1.1608 6 1 0.8258 3.0630 0.9822 7 6 1.6539 1.7535 2.4504 8 7 2.3955 0.6894 2.6678 9 14 0.8974 2.6746 3.8887 10 1 -0.4420 2.1085 4.1897 11 1 1.7725 2.5361 5.0805 12 1 0.7605 4.1113 3.5395 13 7 1.6559 2.0978 -1.2574 14 6 2.6496 1.8395 -2.3114 15 1 3.0632 0.8407 -2.1712 16 6 1.9691 1.9281 -3.6788 17 6 3.0111 1.7490 -4.7845 18 1 2.7575 0.8801 -5.3922 19 6 3.0437 3.0009 -5.6652 20 6 3.4586 4.2098 -4.8247 21 6 4.7983 3.9354 -4.1412 22 7 4.7108 2.7184 -3.3260 23 6 4.3914 1.5489 -4.1521 24 6 3.7666 2.8787 -2.2170 25 1 -0.3633 0.4256 -0.9354 26 1 -0.3633 -1.0229 0.0990 27 1 -0.3634 0.5971 0.8363 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.5494 0.3826 3.5751 31 1 0.7349 1.8073 -1.5499 32 1 1.2173 1.1397 -3.7594 33 1 1.4815 2.8970 -3.7838 34 1 2.0532 3.1738 -6.0882 35 1 3.7602 2.8571 -6.4751 36 1 2.6970 4.4160 -4.0736 37 1 3.5590 5.0823 -5.4753 38 1 5.0589 4.7811 -3.5025 39 1 5.5729 3.8092 -4.8992 40 1 5.1385 1.4484 -4.9419 41 1 4.3925 0.6487 -3.5412 42 1 3.3352 3.8802 -2.2422 43 1 4.2979 2.7487 -1.2704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717212470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:21 Heat of formation + Delta-G solvation = -24.714750 kcal Electronic energy + Delta-G solvation = -20171.318300 eV Core-core repulsion = 17442.632284 eV Total energy + Delta-G solvation = -2728.686016 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.58965 -38.22495 -35.04960 -34.13343 -33.32068 -31.88534 -29.60980 -27.80575 -27.05430 -25.17840 -24.66990 -23.03051 -22.09649 -20.85670 -18.88792 -18.11426 -17.69357 -16.76317 -16.64569 -16.10625 -15.58164 -15.32779 -15.00083 -14.55911 -14.46726 -14.26427 -14.06613 -13.61701 -13.41689 -13.03609 -12.87228 -12.68213 -12.47767 -12.45070 -12.27742 -12.17837 -12.14798 -11.97941 -11.70249 -11.68336 -11.44805 -11.15637 -10.99952 -10.84910 -10.42454 -9.06348 -8.82806 -8.04684 -6.13099 1.42295 1.43887 1.53845 2.45659 3.05176 3.24128 3.55673 3.73960 3.84992 4.03732 4.11938 4.21855 4.27082 4.31540 4.46186 4.52605 4.55948 4.58601 4.62894 4.72620 4.72908 4.84422 4.96711 4.96802 5.04704 5.08640 5.12284 5.18059 5.25596 5.28496 5.30468 5.39813 5.42542 5.51466 5.69260 5.74112 5.84778 6.20511 6.32139 6.34923 6.71005 6.87582 7.00294 7.54741 9.00868 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.031947 B = 0.005817 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.241692 B = 4812.061064 C = 5116.722154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.138 4.138 3 C 0.226 3.774 4 H -0.007 1.007 5 C -0.498 4.498 6 H 0.052 0.948 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.951 3.049 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.682 5.682 14 C 0.078 3.922 15 H 0.021 0.979 16 C -0.110 4.110 17 C -0.116 4.116 18 H 0.089 0.911 19 C -0.103 4.103 20 C -0.155 4.155 21 C 0.056 3.944 22 N -0.549 5.549 23 C 0.059 3.941 24 C 0.083 3.917 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.020 0.980 29 H 0.060 0.940 30 H 0.258 0.742 31 H 0.333 0.667 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.990 2.809 -16.906 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.177 4.177 3 C 0.118 3.882 4 H 0.011 0.989 5 C -0.537 4.537 6 H 0.070 0.930 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.777 3.223 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.314 5.314 14 C -0.033 4.033 15 H 0.039 0.961 16 C -0.148 4.148 17 C -0.137 4.137 18 H 0.107 0.893 19 C -0.141 4.141 20 C -0.193 4.193 21 C -0.071 4.071 22 N -0.272 5.272 23 C -0.070 4.070 24 C -0.045 4.045 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.152 0.848 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.795 3.254 -16.363 16.780 hybrid contribution -1.161 -0.601 0.939 1.610 sum 0.633 2.654 -15.424 15.663 Atomic orbital electron populations 1.21468 0.95773 0.99597 1.00862 1.21940 0.96592 1.00134 0.99062 1.18918 0.93275 0.89251 0.86782 0.98931 1.21282 1.30273 1.11245 0.90889 0.92988 1.25602 0.95975 0.95892 1.01051 1.70023 1.40057 1.25183 1.20966 0.85661 0.78323 0.79181 0.79099 1.20065 1.21340 1.19701 1.60745 1.04395 1.62931 1.03330 1.21683 0.93722 0.96043 0.91865 0.96068 1.21777 0.97919 1.02342 0.92714 1.21753 0.95572 0.99892 0.96478 0.89279 1.21540 1.02180 0.93095 0.97271 1.22107 0.98212 0.99191 0.99837 1.22219 0.97161 0.91414 0.96338 1.61800 1.49019 1.04945 1.11396 1.22093 0.95735 0.92838 0.96286 1.21754 0.91118 0.98545 0.93123 0.93200 0.93994 0.93538 0.96101 0.92153 0.93266 0.84828 0.92016 0.91189 0.91319 0.90313 0.93291 0.89977 0.91549 0.89197 0.89009 0.92288 0.92640 0.95023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.40 71.98 0.68 -4.35 16 2 C -0.14 -6.58 5.49 30.59 0.17 -6.41 16 3 C 0.23 11.49 2.13 44.17 0.09 11.58 16 4 H -0.01 -0.42 7.21 -2.39 -0.02 -0.44 16 5 C -0.50 -27.50 7.25 25.60 0.19 -27.31 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 7 C 0.01 0.71 5.27 84.65 0.45 1.16 16 8 N -0.92 -53.66 11.37 21.45 0.24 -53.42 16 9 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 13 N -0.68 -28.85 6.05 -473.01 -2.86 -31.71 16 14 C 0.08 2.81 2.02 44.82 0.09 2.90 16 15 H 0.02 0.86 5.96 -2.38 -0.01 0.84 16 16 C -0.11 -3.03 4.72 30.59 0.14 -2.88 16 17 C -0.12 -2.57 3.25 -10.72 -0.03 -2.60 16 18 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 19 C -0.10 -1.88 5.30 30.62 0.16 -1.72 16 20 C -0.15 -3.18 5.44 30.54 0.17 -3.01 16 21 C 0.06 1.30 5.59 86.29 0.48 1.78 16 22 N -0.55 -16.13 5.08 -897.52 -4.56 -20.69 16 23 C 0.06 1.47 5.37 86.39 0.46 1.94 16 24 C 0.08 3.02 5.39 86.33 0.47 3.49 16 25 H 0.05 1.83 6.65 -2.39 -0.02 1.82 16 26 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 2.16 6.83 -2.39 -0.02 2.15 16 28 H 0.02 0.91 7.46 -2.39 -0.02 0.90 16 29 H 0.06 3.29 6.22 -2.39 -0.01 3.28 16 30 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.33 13.17 6.25 -89.69 -0.56 12.61 16 32 H 0.06 1.64 8.16 -2.26 -0.02 1.62 16 33 H 0.07 1.96 6.43 -2.40 -0.02 1.94 16 34 H 0.07 1.16 8.15 -2.34 -0.02 1.14 16 35 H 0.08 1.17 8.15 -2.34 -0.02 1.15 16 36 H 0.05 1.23 5.58 -2.42 -0.01 1.22 16 37 H 0.08 1.36 8.17 -2.22 -0.02 1.34 16 38 H 0.07 1.59 8.15 -2.31 -0.02 1.57 16 39 H 0.09 1.71 8.15 -2.33 -0.02 1.69 16 40 H 0.09 1.89 8.15 -2.30 -0.02 1.87 16 41 H 0.06 1.69 6.85 -2.50 -0.02 1.68 16 42 H 0.06 2.04 6.55 -2.35 -0.02 2.03 16 43 H 0.03 1.39 7.58 -2.21 -0.02 1.37 16 Total: -1.00 -60.19 309.04 -1.22 -61.41 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.42 Total: 23.41 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 3.51 Total: -25.44 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -7.18 Total: -105.82 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -60.19 -1.22 -61.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717212470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.695 kcal (2) G-P(sol) polarization free energy of solvation -60.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds